Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 259, 273 |
| AciI | CCGC | 3 cut(s) | 53, 259, 408 |
| AclWI | GGATC | 1 cut(s) | 683 |
| AcsI | RAATTY | 1 cut(s) | 481 |
| AfaI | GTAC | 1 cut(s) | 168 |
| AgsI | TTSAA | 8 cut(s) | 83, 133, 143, 346, 358, 458, 652, 659 |
| AjiI | CACGTC | 1 cut(s) | 174 |
| AluBI | AGCT | 2 cut(s) | 21, 301 |
| AluI | AGCT | 2 cut(s) | 21, 301 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| AlwI | GGATC | 1 cut(s) | 683 |
| AoxI | GGCC | 1 cut(s) | 462 |
| ApoI | RAATTY | 1 cut(s) | 481 |
| AseI | ATTAAT | 1 cut(s) | 290 |
| AspA2I | CCTAGG | 1 cut(s) | 323 |
| AspLEI | GCGC | 2 cut(s) | 259, 273 |
| AspS9I | GGNCC | 3 cut(s) | 212, 380, 462 |
| AsuHPI | GGTGA | 2 cut(s) | 67, 340 |
| AvaII | GGWCC | 2 cut(s) | 212, 380 |
| AvrII | CCTAGG | 1 cut(s) | 323 |
| BaeGI | GKGCMC | 1 cut(s) | 521 |
| BbvCI | CCTCAGC | 1 cut(s) | 384 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 583, 617 |
| BclI | TGATCA | 1 cut(s) | 330 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BfaI | CTAG | 3 cut(s) | 324, 392, 552 |
| BlnI | CCTAGG | 1 cut(s) | 323 |
| Bme18I | GGWCC | 2 cut(s) | 212, 380 |
| BmgBI | CACGTC | 1 cut(s) | 174 |
| BmgT120I | GGNCC | 3 cut(s) | 212, 380, 462 |
| BmiI | GGNNCC | 1 cut(s) | 463 |
| BmsI | GCATC | 1 cut(s) | 409 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 208, 240 |
| Bpu10I | CCTNAGC | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 2 cut(s) | 323, 635 |
| Bse3DI | GCAATG | 1 cut(s) | 317 |
| BseDI | CCNNGG | 2 cut(s) | 323, 635 |
| BseGI | GGATG | 2 cut(s) | 424, 631 |
| BseMI | GCAATG | 1 cut(s) | 317 |
| BseMII | CTCAG | 3 cut(s) | 8, 398, 594 |
| BseSI | GKGCMC | 1 cut(s) | 521 |
| Bsh1236I | CGCG | 2 cut(s) | 259, 273 |
| BshFI | GGCC | 1 cut(s) | 464 |
| BslFI | GGGAC | 1 cut(s) | 688 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsmBI | CGTCTC | 1 cut(s) | 482 |
| BsmFI | GGGAC | 1 cut(s) | 688 |
| BsnI | GGCC | 1 cut(s) | 464 |
| Bsp1286I | GDGCHC | 1 cut(s) | 521 |
| Bsp143I | GATC | 4 cut(s) | 274, 330, 445, 688 |
| BspACI | CCGC | 3 cut(s) | 53, 259, 408 |
| BspANI | GGCC | 1 cut(s) | 464 |
| BspCNI | CTCAG | 3 cut(s) | 9, 397, 593 |
| BspFNI | CGCG | 2 cut(s) | 259, 273 |
| BspLI | GGNNCC | 1 cut(s) | 463 |
| BspPI | GGATC | 1 cut(s) | 683 |
| BsrDI | GCAATG | 1 cut(s) | 317 |
| BssECI | CCNNGG | 2 cut(s) | 323, 635 |
| BssMI | GATC | 4 cut(s) | 274, 330, 445, 688 |
| BssT1I | CCWWGG | 1 cut(s) | 323 |
| Bst4CI | ACNGT | 1 cut(s) | 380 |
| BstDEI | CTNAG | 4 cut(s) | 17, 65, 384, 580 |
| BstF5I | GGATG | 2 cut(s) | 424, 631 |
| BstFNI | CGCG | 2 cut(s) | 259, 273 |
| BstHHI | GCGC | 2 cut(s) | 259, 273 |
| BstKTI | GATC | 4 cut(s) | 277, 333, 448, 691 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstMBI | GATC | 4 cut(s) | 274, 330, 445, 688 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 59 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSLI | GKGCMC | 1 cut(s) | 521 |
| BstUI | CGCG | 2 cut(s) | 259, 273 |
| BsuRI | GGCC | 1 cut(s) | 464 |
| BtrI | CACGTC | 1 cut(s) | 174 |
| BtsCI | GGATG | 2 cut(s) | 424, 631 |
| CfoI | GCGC | 2 cut(s) | 259, 273 |
| Cfr13I | GGNCC | 3 cut(s) | 212, 380, 462 |
| CseI | GACGC | 2 cut(s) | 377, 499 |
| Csp6I | GTAC | 1 cut(s) | 167 |
| CviAII | CATG | 5 cut(s) | 164, 196, 282, 474, 677 |
| CviJI | RGCY | 8 cut(s) | 21, 62, 209, 223, 301, 464, 512, 546 |
| CviKI_1 | RGCY | 8 cut(s) | 21, 62, 209, 223, 301, 464, 512, 546 |
| CviQI | GTAC | 1 cut(s) | 167 |
| DdeI | CTNAG | 4 cut(s) | 17, 65, 384, 580 |
| DpnI | GATC | 4 cut(s) | 276, 332, 447, 690 |
| DpnII | GATC | 4 cut(s) | 274, 330, 445, 688 |
| Eco130I | CCWWGG | 1 cut(s) | 323 |
| Eco47I | GGWCC | 2 cut(s) | 212, 380 |
| EcoRI | GAATTC | 1 cut(s) | 481 |
| EcoT14I | CCWWGG | 1 cut(s) | 323 |
| ErhI | CCWWGG | 1 cut(s) | 323 |
| Esp3I | CGTCTC | 1 cut(s) | 482 |
| FaeI | CATG | 5 cut(s) | 167, 199, 285, 477, 680 |
| FaqI | GGGAC | 1 cut(s) | 688 |
| FatI | CATG | 5 cut(s) | 163, 195, 281, 473, 676 |
| FbaI | TGATCA | 1 cut(s) | 330 |
| FokI | GGATG | 2 cut(s) | 431, 618 |
| FspBI | CTAG | 3 cut(s) | 324, 392, 552 |
| GlaI | GCGC | 2 cut(s) | 258, 272 |
| HaeIII | GGCC | 1 cut(s) | 464 |
| HgaI | GACGC | 2 cut(s) | 377, 499 |
| HhaI | GCGC | 2 cut(s) | 259, 273 |
| Hin1II | CATG | 5 cut(s) | 167, 199, 285, 477, 680 |
| Hin6I | GCGC | 2 cut(s) | 257, 271 |
| HinP1I | GCGC | 2 cut(s) | 257, 271 |
| HinfI | GANTC | 5 cut(s) | 314, 578, 648, 659, 701 |
| HphI | GGTGA | 2 cut(s) | 67, 340 |
| Hpy188I | TCNGA | 6 cut(s) | 18, 216, 487, 583, 594, 639 |
| Hpy188III | TCNNGA | 2 cut(s) | 392, 503 |
| Hpy99I | CGWCG | 2 cut(s) | 178, 181 |
| HpyAV | CCTTC | 2 cut(s) | 52, 127 |
| HpyCH4III | ACNGT | 1 cut(s) | 380 |
| HpyCH4IV | ACGT | 1 cut(s) | 173 |
| HpyCH4V | TGCA | 2 cut(s) | 163, 604 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 65, 384, 580 |
| HpySE526I | ACGT | 1 cut(s) | 173 |
| Hsp92II | CATG | 5 cut(s) | 167, 199, 285, 477, 680 |
| HspAI | GCGC | 2 cut(s) | 257, 271 |
| Ksp22I | TGATCA | 1 cut(s) | 330 |
| Kzo9I | GATC | 4 cut(s) | 274, 330, 445, 688 |
| LpnPI | CCDG | 3 cut(s) | 7, 195, 225 |
| LweI | GCATC | 1 cut(s) | 409 |
| MaeI | CTAG | 3 cut(s) | 324, 392, 552 |
| MaeII | ACGT | 1 cut(s) | 173 |
| MaeIII | GTNAC | 1 cut(s) | 575 |
| MalI | GATC | 4 cut(s) | 276, 332, 447, 690 |
| MboI | GATC | 4 cut(s) | 274, 330, 445, 688 |
| MboII | GAAGA | 2 cut(s) | 71, 561 |
| MhlI | GDGCHC | 1 cut(s) | 521 |
| MluCI | AATT | 7 cut(s) | 25, 96, 127, 287, 402, 481, 494 |
| MlyI | GAGTC | 2 cut(s) | 572, 710 |
| MmeI | TCCRAC | 1 cut(s) | 71 |
| MnlI | CCTC | 7 cut(s) | 234, 390, 393, 427, 633, 645, 673 |
| MseI | TTAA | 4 cut(s) | 107, 236, 290, 558 |
| MspA1I | CMGCKG | 1 cut(s) | 53 |
| MvnI | CGCG | 2 cut(s) | 259, 273 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 59 |
| NdeII | GATC | 4 cut(s) | 274, 330, 445, 688 |
| NlaIII | CATG | 5 cut(s) | 167, 199, 285, 477, 680 |
| NlaIV | GGNNCC | 1 cut(s) | 463 |
| NmuCI | GTSAC | 1 cut(s) | 575 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PfeI | GAWTC | 3 cut(s) | 314, 648, 659 |
| PleI | GAGTC | 2 cut(s) | 572, 709 |
| PpsI | GAGTC | 2 cut(s) | 572, 709 |
| PshBI | ATTAAT | 1 cut(s) | 290 |
| PspN4I | GGNNCC | 1 cut(s) | 463 |
| PspPI | GGNCC | 3 cut(s) | 212, 380, 462 |
| RsaI | GTAC | 1 cut(s) | 168 |
| RsaNI | GTAC | 1 cut(s) | 167 |
| SaqAI | TTAA | 4 cut(s) | 107, 236, 290, 558 |
| Sau3AI | GATC | 4 cut(s) | 274, 330, 445, 688 |
| Sau96I | GGNCC | 3 cut(s) | 212, 380, 462 |
| SchI | GAGTC | 2 cut(s) | 572, 710 |
| SduI | GDGCHC | 1 cut(s) | 521 |
| SetI | ASST | 4 cut(s) | 23, 176, 303, 567 |
| SfaNI | GCATC | 1 cut(s) | 409 |
| SinI | GGWCC | 2 cut(s) | 212, 380 |
| Sse9I | AATT | 7 cut(s) | 25, 96, 127, 287, 402, 481, 494 |
| SsiI | CCGC | 3 cut(s) | 53, 259, 408 |
| SspMI | CTAG | 3 cut(s) | 324, 392, 552 |
| StyI | CCWWGG | 1 cut(s) | 323 |
| TaaI | ACNGT | 1 cut(s) | 380 |
| TaiI | ACGT | 1 cut(s) | 176 |
| TaqI | TCGA | 1 cut(s) | 572 |
| TasI | AATT | 7 cut(s) | 25, 96, 127, 287, 402, 481, 494 |
| TfiI | GAWTC | 3 cut(s) | 314, 648, 659 |
| Tru1I | TTAA | 4 cut(s) | 107, 236, 290, 558 |
| Tru9I | TTAA | 4 cut(s) | 107, 236, 290, 558 |
| TseFI | GTSAC | 1 cut(s) | 575 |
| Tsp45I | GTSAC | 1 cut(s) | 575 |
| TspDTI | ATGAA | 3 cut(s) | 17, 306, 363 |
| TspGWI | ACGGA | 1 cut(s) | 681 |
| VpaK11BI | GGWCC | 2 cut(s) | 212, 380 |
| VspI | ATTAAT | 1 cut(s) | 290 |
| XapI | RAATTY | 1 cut(s) | 481 |
| XbaI | TCTAGA | 1 cut(s) | 391 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 323 |
| XspI | CTAG | 3 cut(s) | 324, 392, 552 |