ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 138 |
| AccB1I | GGYRCC | 1 cut(s) | 523 |
| AciI | CCGC | 2 cut(s) | 1169, 1220 |
| AclWI | GGATC | 5 cut(s) | 78, 109, 411, 424, 494 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AcsI | RAATTY | 3 cut(s) | 436, 719, 1030 |
| AcuI | CTGAAG | 2 cut(s) | 352, 863 |
| AfaI | GTAC | 4 cut(s) | 217, 562, 701, 1113 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 57, 483, 508 |
| AflII | CTTAAG | 1 cut(s) | 782 |
| AgsI | TTSAA | 6 cut(s) | 67, 112, 436, 614, 1000, 1241 |
| AjnI | CCWGG | 2 cut(s) | 56, 462 |
| Alw26I | GTCTC | 1 cut(s) | 288 |
| AlwI | GGATC | 5 cut(s) | 78, 109, 411, 424, 494 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 536 |
| AoxI | GGCC | 2 cut(s) | 205, 594 |
| ApaI | GGGCCC | 1 cut(s) | 598 |
| ApeKI | GCWGC | 4 cut(s) | 247, 628, 660, 820 |
| ApoI | RAATTY | 3 cut(s) | 436, 719, 1030 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 46, 78 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 731 |
| AspA2I | CCTAGG | 1 cut(s) | 590 |
| AspLEI | GCGC | 2 cut(s) | 139, 900 |
| AspS9I | GGNCC | 3 cut(s) | 460, 594, 595 |
| AsuC2I | CCSGG | 2 cut(s) | 334, 865 |
| AsuHPI | GGTGA | 3 cut(s) | 298, 523, 1217 |
| AvaII | GGWCC | 1 cut(s) | 460 |
| AvrII | CCTAGG | 1 cut(s) | 590 |
| BaeGI | GKGCMC | 1 cut(s) | 598 |
| BalI | TGGCCA | 1 cut(s) | 207 |
| BamHI | GGATCC | 1 cut(s) | 416 |
| BanI | GGYRCC | 1 cut(s) | 523 |
| BanII | GRGCYC | 1 cut(s) | 598 |
| BbvI | GCAGC | 4 cut(s) | 234, 640, 672, 832 |
| BccI | CCATC | 3 cut(s) | 187, 638, 1154 |
| BceAI | ACGGC | 1 cut(s) | 361 |
| BciT130I | CCWGG | 2 cut(s) | 58, 464 |
| BciVI | GTATCC | 1 cut(s) | 1146 |
| BclI | TGATCA | 2 cut(s) | 538, 1078 |
| BcnI | CCSGG | 2 cut(s) | 334, 865 |
| BcoDI | GTCTC | 1 cut(s) | 288 |
| BfaI | CTAG | 4 cut(s) | 507, 591, 680, 1152 |
| BfrI | CTTAAG | 1 cut(s) | 782 |
| BfuI | GTATCC | 1 cut(s) | 1146 |
| BisI | GCNGC | 6 cut(s) | 248, 629, 661, 821, 1169, 1221 |
| BlnI | CCTAGG | 1 cut(s) | 590 |
| BlpI | GCTNAGC | 1 cut(s) | 17 |
| BlsI | GCNGC | 6 cut(s) | 249, 630, 662, 822, 1170, 1222 |
| Bme1390I | CCNGG | 4 cut(s) | 58, 334, 464, 865 |
| Bme18I | GGWCC | 1 cut(s) | 460 |
| BmgT120I | GGNCC | 3 cut(s) | 460, 594, 595 |
| BmiI | GGNNCC | 5 cut(s) | 177, 375, 418, 525, 596 |
| BmrFI | CCNGG | 4 cut(s) | 58, 334, 464, 865 |
| BmsI | GCATC | 4 cut(s) | 37, 139, 148, 348 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 556, 588 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 17 |
| BpuMI | CCSGG | 2 cut(s) | 334, 865 |
| Bsa29I | ATCGAT | 1 cut(s) | 489 |
| BsaAI | YACGTR | 1 cut(s) | 560 |
| BsaJI | CCNNGG | 4 cut(s) | 57, 278, 420, 590 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 57, 483, 508 |
| Bse1I | ACTGG | 1 cut(s) | 199 |
| BseBI | CCWGG | 2 cut(s) | 58, 464 |
| BseCI | ATCGAT | 1 cut(s) | 489 |
| BseDI | CCNNGG | 4 cut(s) | 57, 278, 420, 590 |
| BseGI | GGATG | 2 cut(s) | 16, 680 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 57, 483, 508 |
| BseMII | CTCAG | 1 cut(s) | 543 |
| BseNI | ACTGG | 1 cut(s) | 199 |
| BseRI | GAGGAG | 2 cut(s) | 564, 1121 |
| BseSI | GKGCMC | 1 cut(s) | 598 |
| BseXI | GCAGC | 4 cut(s) | 234, 640, 672, 832 |
| BshFI | GGCC | 2 cut(s) | 207, 596 |
| BshNI | GGYRCC | 1 cut(s) | 523 |
| BshVI | ATCGAT | 1 cut(s) | 489 |
| BsiSI | CCGG | 2 cut(s) | 333, 864 |
| BsiWI | CGTACG | 1 cut(s) | 560 |
| BslFI | GGGAC | 3 cut(s) | 139, 349, 1132 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 57, 483, 508 |
| BsmAI | GTCTC | 1 cut(s) | 288 |
| BsmFI | GGGAC | 3 cut(s) | 139, 349, 1132 |
| BsnI | GGCC | 2 cut(s) | 207, 596 |
| Bsp120I | GGGCCC | 1 cut(s) | 594 |
| Bsp1286I | GDGCHC | 1 cut(s) | 598 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 17 |
| Bsp19I | CCATGG | 1 cut(s) | 420 |
| BspACI | CCGC | 2 cut(s) | 1169, 1220 |
| BspANI | GGCC | 2 cut(s) | 207, 596 |
| BspCNI | CTCAG | 1 cut(s) | 542 |
| BspDI | ATCGAT | 1 cut(s) | 489 |
| BspHI | TCATGA | 1 cut(s) | 715 |
| BspLI | GGNNCC | 5 cut(s) | 177, 375, 418, 525, 596 |
| BspPI | GGATC | 5 cut(s) | 78, 109, 411, 424, 494 |
| BspT107I | GGYRCC | 1 cut(s) | 523 |
| BspTI | CTTAAG | 1 cut(s) | 782 |
| BsrI | ACTGG | 1 cut(s) | 199 |
| BssECI | CCNNGG | 4 cut(s) | 57, 278, 420, 590 |
| BssT1I | CCWWGG | 3 cut(s) | 278, 420, 590 |
| Bst2UI | CCWGG | 2 cut(s) | 58, 464 |
| BstAFI | CTTAAG | 1 cut(s) | 782 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 247 |
| BstBAI | YACGTR | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 1 cut(s) | 825 |
| BstDEI | CTNAG | 4 cut(s) | 17, 529, 1101, 1143 |
| BstDSI | CCRYGG | 1 cut(s) | 420 |
| BstF5I | GGATG | 2 cut(s) | 16, 680 |
| BstHHI | GCGC | 2 cut(s) | 139, 900 |
| BstMAI | GTCTC | 1 cut(s) | 288 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 27, 247 |
| BstNI | CCWGG | 2 cut(s) | 58, 464 |
| BstSCI | CCNGG | 4 cut(s) | 56, 332, 462, 863 |
| BstSLI | GKGCMC | 1 cut(s) | 598 |
| BstSNI | TACGTA | 1 cut(s) | 560 |
| BstV1I | GCAGC | 4 cut(s) | 234, 640, 672, 832 |
| BstX2I | RGATCY | 3 cut(s) | 70, 114, 416 |
| BstYI | RGATCY | 3 cut(s) | 70, 114, 416 |
| Bsu15I | ATCGAT | 1 cut(s) | 489 |
| BsuI | GTATCC | 1 cut(s) | 1146 |
| BsuRI | GGCC | 2 cut(s) | 207, 596 |
| BsuTUI | ATCGAT | 1 cut(s) | 489 |
| BtgI | CCRYGG | 1 cut(s) | 420 |
| BtsCI | GGATG | 2 cut(s) | 16, 680 |
| BtsI | GCAGTG | 1 cut(s) | 159 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| Cac8I | GCNNGC | 1 cut(s) | 825 |
| CaiI | CAGNNNCTG | 1 cut(s) | 536 |
| CciI | TCATGA | 1 cut(s) | 715 |
| CfoI | GCGC | 2 cut(s) | 139, 900 |
| Cfr13I | GGNCC | 3 cut(s) | 460, 594, 595 |
| ClaI | ATCGAT | 1 cut(s) | 489 |
| Csp6I | GTAC | 4 cut(s) | 216, 561, 700, 1112 |
| CviAII | CATG | 7 cut(s) | 209, 237, 421, 542, 716, 837, 944 |
| CviQI | GTAC | 4 cut(s) | 216, 561, 700, 1112 |
| DdeI | CTNAG | 4 cut(s) | 17, 529, 1101, 1143 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| Eco105I | TACGTA | 1 cut(s) | 560 |
| Eco130I | CCWWGG | 3 cut(s) | 278, 420, 590 |
| Eco24I | GRGCYC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 1 cut(s) | 460 |
| Eco57I | CTGAAG | 2 cut(s) | 352, 863 |
| EcoO109I | RGGNCCY | 1 cut(s) | 594 |
| EcoRI | GAATTC | 1 cut(s) | 436 |
| EcoRII | CCWGG | 2 cut(s) | 56, 462 |
| EcoT14I | CCWWGG | 3 cut(s) | 278, 420, 590 |
| EcoT38I | GRGCYC | 1 cut(s) | 598 |
| ErhI | CCWWGG | 3 cut(s) | 278, 420, 590 |
| FaeI | CATG | 7 cut(s) | 212, 240, 424, 545, 719, 840, 947 |
| FaqI | GGGAC | 3 cut(s) | 139, 349, 1132 |
| FatI | CATG | 7 cut(s) | 208, 236, 420, 541, 715, 836, 943 |
| FbaI | TGATCA | 2 cut(s) | 538, 1078 |
| Fnu4HI | GCNGC | 6 cut(s) | 248, 629, 661, 821, 1169, 1221 |
| FokI | GGATG | 2 cut(s) | 23, 687 |
| FriOI | GRGCYC | 1 cut(s) | 598 |
| Fsp4HI | GCNGC | 6 cut(s) | 248, 629, 661, 821, 1169, 1221 |
| FspBI | CTAG | 4 cut(s) | 507, 591, 680, 1152 |
| FspI | TGCGCA | 1 cut(s) | 138 |
| GlaI | GCGC | 2 cut(s) | 138, 899 |
| GluI | GCNGC | 6 cut(s) | 248, 629, 661, 821, 1169, 1221 |
| HaeIII | GGCC | 2 cut(s) | 207, 596 |
| HapII | CCGG | 2 cut(s) | 333, 864 |
| HhaI | GCGC | 2 cut(s) | 139, 900 |
| Hin1II | CATG | 7 cut(s) | 212, 240, 424, 545, 719, 840, 947 |
| Hin6I | GCGC | 2 cut(s) | 137, 898 |
| HinP1I | GCGC | 2 cut(s) | 137, 898 |
| HindIII | AAGCTT | 2 cut(s) | 779, 1002 |
| HinfI | GANTC | 7 cut(s) | 36, 269, 307, 514, 533, 565, 1016 |
| HpaII | CCGG | 2 cut(s) | 333, 864 |
| HphI | GGTGA | 3 cut(s) | 298, 523, 1217 |
| Hpy166II | GTNNAC | 2 cut(s) | 92, 392 |
| Hpy188III | TCNNGA | 4 cut(s) | 458, 680, 716, 1157 |
| Hpy8I | GTNNAC | 2 cut(s) | 92, 392 |
| Hpy99I | CGWCG | 1 cut(s) | 742 |
| HpyAV | CCTTC | 3 cut(s) | 61, 838, 926 |
| HpyCH4IV | ACGT | 3 cut(s) | 428, 454, 559 |
| HpyCH4V | TGCA | 8 cut(s) | 30, 42, 152, 361, 474, 584, 628, 913 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 27, 247 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 529, 1101, 1143 |
| HpySE526I | ACGT | 3 cut(s) | 428, 454, 559 |
| Hsp92II | CATG | 7 cut(s) | 212, 240, 424, 545, 719, 840, 947 |
| HspAI | GCGC | 2 cut(s) | 137, 898 |
| Ksp22I | TGATCA | 2 cut(s) | 538, 1078 |
| LmnI | GCTCC | 3 cut(s) | 181, 373, 577 |
| Lsp1109I | GCAGC | 4 cut(s) | 234, 640, 672, 832 |
| LweI | GCATC | 4 cut(s) | 37, 139, 148, 348 |
| MaeI | CTAG | 4 cut(s) | 507, 591, 680, 1152 |
| MaeII | ACGT | 3 cut(s) | 428, 454, 559 |
| MaeIII | GTNAC | 3 cut(s) | 450, 555, 1060 |
| MboII | GAAGA | 6 cut(s) | 124, 179, 337, 772, 1171, 1229 |
| MfeI | CAATTG | 1 cut(s) | 242 |
| MflI | RGATCY | 3 cut(s) | 70, 114, 416 |
| MhlI | GDGCHC | 1 cut(s) | 598 |
| MlsI | TGGCCA | 1 cut(s) | 207 |
| MluCI | AATT | 7 cut(s) | 25, 242, 436, 719, 831, 1030, 1047 |
| MluNI | TGGCCA | 1 cut(s) | 207 |
| MlyI | GAGTC | 2 cut(s) | 527, 574 |
| MmeI | TCCRAC | 3 cut(s) | 170, 285, 1207 |
| Mox20I | TGGCCA | 1 cut(s) | 207 |
| MroXI | GAANNNNTTC | 1 cut(s) | 731 |
| MscI | TGGCCA | 1 cut(s) | 207 |
| MseI | TTAA | 3 cut(s) | 300, 606, 783 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 184 |
| Msp20I | TGGCCA | 1 cut(s) | 207 |
| MspCI | CTTAAG | 1 cut(s) | 782 |
| MspI | CCGG | 2 cut(s) | 333, 864 |
| MspR9I | CCNGG | 4 cut(s) | 58, 334, 464, 865 |
| MunI | CAATTG | 1 cut(s) | 242 |
| MvaI | CCWGG | 2 cut(s) | 58, 464 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 27, 247 |
| NciI | CCSGG | 2 cut(s) | 334, 865 |
| NcoI | CCATGG | 1 cut(s) | 420 |
| NlaIII | CATG | 7 cut(s) | 212, 240, 424, 545, 719, 840, 947 |
| NlaIV | GGNNCC | 5 cut(s) | 177, 375, 418, 525, 596 |
| NsbI | TGCGCA | 1 cut(s) | 138 |
| PagI | TCATGA | 1 cut(s) | 715 |
| PdmI | GAANNNNTTC | 1 cut(s) | 731 |
| PfeI | GAWTC | 5 cut(s) | 36, 269, 307, 514, 1016 |
| Pfl23II | CGTACG | 1 cut(s) | 560 |
| PkrI | GCNGC | 6 cut(s) | 249, 630, 662, 822, 1170, 1222 |
| PleI | GAGTC | 2 cut(s) | 527, 573 |
| PpsI | GAGTC | 2 cut(s) | 527, 573 |
| Ppu21I | YACGTR | 1 cut(s) | 560 |
| Psp6I | CCWGG | 2 cut(s) | 56, 462 |
| PspGI | CCWGG | 2 cut(s) | 56, 462 |
| PspLI | CGTACG | 1 cut(s) | 560 |
| PspN4I | GGNNCC | 5 cut(s) | 177, 375, 418, 525, 596 |
| PspOMI | GGGCCC | 1 cut(s) | 594 |
| PspPI | GGNCC | 3 cut(s) | 460, 594, 595 |
| PstNI | CAGNNNCTG | 1 cut(s) | 536 |
| PsuI | RGATCY | 3 cut(s) | 70, 114, 416 |
| RsaI | GTAC | 4 cut(s) | 217, 562, 701, 1113 |
| RsaNI | GTAC | 4 cut(s) | 216, 561, 700, 1112 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 184 |
| SaqAI | TTAA | 3 cut(s) | 300, 606, 783 |
| SatI | GCNGC | 6 cut(s) | 248, 629, 661, 821, 1169, 1221 |
| Sau96I | GGNCC | 3 cut(s) | 460, 594, 595 |
| SchI | GAGTC | 2 cut(s) | 527, 574 |
| ScrFI | CCNGG | 4 cut(s) | 58, 334, 464, 865 |
| SduI | GDGCHC | 1 cut(s) | 598 |
| SfaNI | GCATC | 4 cut(s) | 37, 139, 148, 348 |
| SinI | GGWCC | 1 cut(s) | 460 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 184 |
| SmlI | CTYRAG | 1 cut(s) | 782 |
| SmoI | CTYRAG | 1 cut(s) | 782 |
| SnaBI | TACGTA | 1 cut(s) | 560 |
| Sse9I | AATT | 7 cut(s) | 25, 242, 436, 719, 831, 1030, 1047 |
| SsiI | CCGC | 2 cut(s) | 1169, 1220 |
| SspMI | CTAG | 4 cut(s) | 507, 591, 680, 1152 |
| StyD4I | CCNGG | 4 cut(s) | 56, 332, 462, 863 |
| StyI | CCWWGG | 3 cut(s) | 278, 420, 590 |
| TaiI | ACGT | 3 cut(s) | 431, 457, 562 |
| TaqI | TCGA | 2 cut(s) | 343, 489 |
| TasI | AATT | 7 cut(s) | 25, 242, 436, 719, 831, 1030, 1047 |
| TatI | WGTACW | 1 cut(s) | 699 |
| TauI | GCSGC | 2 cut(s) | 1171, 1223 |
| TfiI | GAWTC | 5 cut(s) | 36, 269, 307, 514, 1016 |
| Tru1I | TTAA | 3 cut(s) | 300, 606, 783 |
| Tru9I | TTAA | 3 cut(s) | 300, 606, 783 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseI | GCWGC | 4 cut(s) | 247, 628, 660, 820 |
| TspDTI | ATGAA | 7 cut(s) | 506, 732, 740, 863, 969, 1088, 1217 |
| TspGWI | ACGGA | 1 cut(s) | 899 |
| TspRI | CASTG | 1 cut(s) | 159 |
| Vha464I | CTTAAG | 1 cut(s) | 782 |
| VpaK11BI | GGWCC | 1 cut(s) | 460 |
| XapI | RAATTY | 3 cut(s) | 436, 719, 1030 |
| XbaI | TCTAGA | 1 cut(s) | 679 |
| XmaJI | CCTAGG | 1 cut(s) | 590 |
| XmnI | GAANNNNTTC | 1 cut(s) | 731 |
| XspI | CTAG | 4 cut(s) | 507, 591, 680, 1152 |