ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 401 |
| Acc36I | ACCTGC | 1 cut(s) | 401 |
| Acc65I | GGTACC | 1 cut(s) | 941 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 941 |
| AccBSI | CCGCTC | 1 cut(s) | 567 |
| AccII | CGCG | 1 cut(s) | 83 |
| AciI | CCGC | 2 cut(s) | 83, 565 |
| AclI | AACGTT | 1 cut(s) | 1013 |
| AclWI | GGATC | 5 cut(s) | 93, 594, 823, 896, 1128 |
| AcoI | YGGCCR | 1 cut(s) | 107 |
| AcsI | RAATTY | 2 cut(s) | 136, 694 |
| AcuI | CTGAAG | 1 cut(s) | 377 |
| AfaI | GTAC | 5 cut(s) | 62, 774, 826, 943, 1078 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 82, 721 |
| AgsI | TTSAA | 7 cut(s) | 41, 258, 274, 634, 865, 1018, 1061 |
| AjnI | CCWGG | 4 cut(s) | 75, 502, 670, 1143 |
| AluBI | AGCT | 4 cut(s) | 44, 353, 842, 920 |
| AluI | AGCT | 4 cut(s) | 44, 353, 842, 920 |
| Alw21I | GWGCWC | 1 cut(s) | 14 |
| Alw26I | GTCTC | 4 cut(s) | 201, 314, 469, 695 |
| AlwI | GGATC | 5 cut(s) | 93, 594, 823, 896, 1128 |
| AoxI | GGCC | 3 cut(s) | 107, 296, 667 |
| ApoI | RAATTY | 2 cut(s) | 136, 694 |
| AseI | ATTAAT | 1 cut(s) | 1179 |
| Asp718I | GGTACC | 1 cut(s) | 941 |
| AspS9I | GGNCC | 4 cut(s) | 297, 500, 668, 796 |
| AsuHPI | GGTGA | 2 cut(s) | 179, 704 |
| AsuII | TTCGAA | 1 cut(s) | 377 |
| AvaII | GGWCC | 2 cut(s) | 500, 796 |
| BaeGI | GKGCMC | 1 cut(s) | 76 |
| BanI | GGYRCC | 2 cut(s) | 71, 941 |
| Bbv12I | GWGCWC | 1 cut(s) | 14 |
| BccI | CCATC | 7 cut(s) | 395, 448, 510, 659, 815, 1033, 1111 |
| BceAI | ACGGC | 1 cut(s) | 122 |
| BciT130I | CCWGG | 4 cut(s) | 77, 504, 672, 1145 |
| BciVI | GTATCC | 1 cut(s) | 1038 |
| BcoDI | GTCTC | 4 cut(s) | 201, 314, 469, 695 |
| BfaI | CTAG | 4 cut(s) | 101, 176, 822, 981 |
| BfuAI | ACCTGC | 1 cut(s) | 401 |
| BfuI | GTATCC | 1 cut(s) | 1038 |
| BglII | AGATCT | 1 cut(s) | 639 |
| Bme1390I | CCNGG | 4 cut(s) | 77, 504, 672, 1145 |
| Bme18I | GGWCC | 2 cut(s) | 500, 796 |
| BmgT120I | GGNCC | 4 cut(s) | 297, 500, 668, 796 |
| BmiI | GGNNCC | 5 cut(s) | 73, 182, 299, 884, 943 |
| BmrFI | CCNGG | 4 cut(s) | 77, 504, 672, 1145 |
| BmsI | GCATC | 2 cut(s) | 481, 922 |
| Bpu10I | CCTNAGC | 1 cut(s) | 765 |
| Bpu14I | TTCGAA | 1 cut(s) | 377 |
| Bsa29I | ATCGAT | 2 cut(s) | 480, 624 |
| BsaJI | CCNNGG | 5 cut(s) | 75, 207, 611, 670, 1143 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 82, 721 |
| Bse1I | ACTGG | 1 cut(s) | 943 |
| BseBI | CCWGG | 4 cut(s) | 77, 504, 672, 1145 |
| BseCI | ATCGAT | 2 cut(s) | 480, 624 |
| BseDI | CCNNGG | 5 cut(s) | 75, 207, 611, 670, 1143 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 82, 721 |
| BseMII | CTCAG | 2 cut(s) | 386, 503 |
| BseNI | ACTGG | 1 cut(s) | 943 |
| BseSI | GKGCMC | 1 cut(s) | 76 |
| BseYI | CCCAGC | 1 cut(s) | 838 |
| BsgI | GTGCAG | 1 cut(s) | 470 |
| Bsh1236I | CGCG | 1 cut(s) | 83 |
| BshFI | GGCC | 3 cut(s) | 109, 298, 669 |
| BshNI | GGYRCC | 2 cut(s) | 71, 941 |
| BshVI | ATCGAT | 2 cut(s) | 480, 624 |
| BsiHKAI | GWGCWC | 1 cut(s) | 14 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BslFI | GGGAC | 2 cut(s) | 472, 831 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 82, 721 |
| BsmAI | GTCTC | 4 cut(s) | 201, 314, 469, 695 |
| BsmFI | GGGAC | 2 cut(s) | 472, 831 |
| BsnI | GGCC | 3 cut(s) | 109, 298, 669 |
| Bsp119I | TTCGAA | 1 cut(s) | 377 |
| Bsp1286I | GDGCHC | 2 cut(s) | 14, 76 |
| Bsp1407I | TGTACA | 1 cut(s) | 1076 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspACI | CCGC | 2 cut(s) | 83, 565 |
| BspANI | GGCC | 3 cut(s) | 109, 298, 669 |
| BspCNI | CTCAG | 2 cut(s) | 387, 504 |
| BspDI | ATCGAT | 2 cut(s) | 480, 624 |
| BspFNI | CGCG | 1 cut(s) | 83 |
| BspLI | GGNNCC | 5 cut(s) | 73, 182, 299, 884, 943 |
| BspMI | ACCTGC | 1 cut(s) | 401 |
| BspPI | GGATC | 5 cut(s) | 93, 594, 823, 896, 1128 |
| BspT104I | TTCGAA | 1 cut(s) | 377 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 941 |
| BsrBI | CCGCTC | 1 cut(s) | 567 |
| BsrGI | TGTACA | 1 cut(s) | 1076 |
| BsrI | ACTGG | 1 cut(s) | 943 |
| BssECI | CCNNGG | 5 cut(s) | 75, 207, 611, 670, 1143 |
| BssT1I | CCWWGG | 2 cut(s) | 207, 611 |
| Bst2UI | CCWGG | 4 cut(s) | 77, 504, 672, 1145 |
| Bst4CI | ACNGT | 2 cut(s) | 262, 463 |
| Bst6I | CTCTTC | 3 cut(s) | 204, 612, 1056 |
| BstAUI | TGTACA | 1 cut(s) | 1076 |
| BstBI | TTCGAA | 1 cut(s) | 377 |
| BstC8I | GCNNGC | 3 cut(s) | 363, 734, 819 |
| BstDEI | CTNAG | 6 cut(s) | 8, 122, 224, 395, 512, 765 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstFNI | CGCG | 1 cut(s) | 83 |
| BstMAI | GTCTC | 4 cut(s) | 201, 314, 469, 695 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 80 |
| BstNI | CCWGG | 4 cut(s) | 77, 504, 672, 1145 |
| BstNSI | RCATGY | 4 cut(s) | 365, 531, 893, 1133 |
| BstSCI | CCNGG | 4 cut(s) | 75, 502, 670, 1143 |
| BstSLI | GKGCMC | 1 cut(s) | 76 |
| BstUI | CGCG | 1 cut(s) | 83 |
| BstX2I | RGATCY | 3 cut(s) | 85, 586, 639 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 214 |
| BstYI | RGATCY | 3 cut(s) | 85, 586, 639 |
| Bsu15I | ATCGAT | 2 cut(s) | 480, 624 |
| BsuI | GTATCC | 1 cut(s) | 1038 |
| BsuRI | GGCC | 3 cut(s) | 109, 298, 669 |
| BsuTUI | ATCGAT | 2 cut(s) | 480, 624 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 936 |
| BveI | ACCTGC | 1 cut(s) | 401 |
| Cac8I | GCNNGC | 3 cut(s) | 363, 734, 819 |
| Cfr13I | GGNCC | 4 cut(s) | 297, 500, 668, 796 |
| ClaI | ATCGAT | 2 cut(s) | 480, 624 |
| CseI | GACGC | 1 cut(s) | 1013 |
| Csp6I | GTAC | 5 cut(s) | 61, 773, 825, 942, 1077 |
| CviAII | CATG | 9 cut(s) | 65, 208, 362, 528, 570, 890, 949, 1130, 1186 |
| CviQI | GTAC | 5 cut(s) | 61, 773, 825, 942, 1077 |
| DdeI | CTNAG | 6 cut(s) | 8, 122, 224, 395, 512, 765 |
| EaeI | YGGCCR | 1 cut(s) | 107 |
| Eam1104I | CTCTTC | 3 cut(s) | 204, 612, 1056 |
| EarI | CTCTTC | 3 cut(s) | 204, 612, 1056 |
| Eco130I | CCWWGG | 2 cut(s) | 207, 611 |
| Eco47I | GGWCC | 2 cut(s) | 500, 796 |
| Eco57I | CTGAAG | 1 cut(s) | 377 |
| EcoO109I | RGGNCCY | 2 cut(s) | 297, 500 |
| EcoRI | GAATTC | 1 cut(s) | 694 |
| EcoRII | CCWGG | 4 cut(s) | 75, 502, 670, 1143 |
| EcoT14I | CCWWGG | 2 cut(s) | 207, 611 |
| ErhI | CCWWGG | 2 cut(s) | 207, 611 |
| FaeI | CATG | 9 cut(s) | 68, 211, 365, 531, 573, 893, 952, 1133, 1189 |
| FaqI | GGGAC | 2 cut(s) | 472, 831 |
| FatI | CATG | 9 cut(s) | 64, 207, 361, 527, 569, 889, 948, 1129, 1185 |
| FspBI | CTAG | 4 cut(s) | 101, 176, 822, 981 |
| GsaI | CCCAGC | 1 cut(s) | 842 |
| HaeIII | GGCC | 3 cut(s) | 109, 298, 669 |
| HapII | CCGG | 1 cut(s) | 113 |
| HgaI | GACGC | 1 cut(s) | 1013 |
| Hin1II | CATG | 9 cut(s) | 68, 211, 365, 531, 573, 893, 952, 1133, 1189 |
| HincII | GTYRAC | 2 cut(s) | 684, 1028 |
| HindII | GTYRAC | 2 cut(s) | 684, 1028 |
| HindIII | AAGCTT | 1 cut(s) | 918 |
| HinfI | GANTC | 6 cut(s) | 56, 254, 602, 703, 791, 861 |
| HpaII | CCGG | 1 cut(s) | 113 |
| HphI | GGTGA | 2 cut(s) | 179, 704 |
| Hpy166II | GTNNAC | 3 cut(s) | 684, 775, 1028 |
| Hpy188I | TCNGA | 7 cut(s) | 357, 396, 446, 469, 513, 700, 796 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 89, 430, 1084, 1097 |
| Hpy8I | GTNNAC | 3 cut(s) | 684, 775, 1028 |
| HpyAV | CCTTC | 3 cut(s) | 213, 268, 747 |
| HpyCH4III | ACNGT | 2 cut(s) | 262, 463 |
| HpyCH4IV | ACGT | 2 cut(s) | 551, 1013 |
| HpyCH4V | TGCA | 6 cut(s) | 237, 249, 451, 583, 732, 1129 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 80 |
| HpyF3I | CTNAG | 6 cut(s) | 8, 122, 224, 395, 512, 765 |
| HpySE526I | ACGT | 2 cut(s) | 551, 1013 |
| Hsp92II | CATG | 9 cut(s) | 68, 211, 365, 531, 573, 893, 952, 1133, 1189 |
| KpnI | GGTACC | 1 cut(s) | 945 |
| LmnI | GCTCC | 2 cut(s) | 469, 888 |
| LweI | GCATC | 2 cut(s) | 481, 922 |
| MaeI | CTAG | 4 cut(s) | 101, 176, 822, 981 |
| MaeII | ACGT | 2 cut(s) | 551, 1013 |
| MaeIII | GTNAC | 2 cut(s) | 167, 593 |
| MbiI | CCGCTC | 1 cut(s) | 567 |
| MboII | GAAGA | 5 cut(s) | 191, 599, 670, 1073, 1117 |
| MflI | RGATCY | 3 cut(s) | 85, 586, 639 |
| MhlI | GDGCHC | 2 cut(s) | 14, 76 |
| MluCI | AATT | 9 cut(s) | 27, 36, 136, 147, 232, 489, 694, 969, 1180 |
| MlyI | GAGTC | 2 cut(s) | 65, 697 |
| MmeI | TCCRAC | 3 cut(s) | 209, 475, 910 |
| MseI | TTAA | 4 cut(s) | 644, 1067, 1179, 1191 |
| MslI | CAYNNNNRTG | 1 cut(s) | 69 |
| MspI | CCGG | 1 cut(s) | 113 |
| MspR9I | CCNGG | 4 cut(s) | 77, 504, 672, 1145 |
| MvaI | CCWGG | 4 cut(s) | 77, 504, 672, 1145 |
| MvnI | CGCG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 80 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NlaIII | CATG | 9 cut(s) | 68, 211, 365, 531, 573, 893, 952, 1133, 1189 |
| NlaIV | GGNNCC | 5 cut(s) | 73, 182, 299, 884, 943 |
| NmuCI | GTSAC | 2 cut(s) | 167, 593 |
| NspI | RCATGY | 4 cut(s) | 365, 531, 893, 1133 |
| NspV | TTCGAA | 1 cut(s) | 377 |
| PaeI | GCATGC | 1 cut(s) | 365 |
| PaqCI | CACCTGC | 1 cut(s) | 401 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 258 |
| PfeI | GAWTC | 4 cut(s) | 254, 602, 791, 861 |
| PleI | GAGTC | 2 cut(s) | 64, 697 |
| PpsI | GAGTC | 2 cut(s) | 64, 697 |
| PpuMI | RGGWCCY | 1 cut(s) | 500 |
| PshBI | ATTAAT | 1 cut(s) | 1179 |
| Psp1406I | AACGTT | 1 cut(s) | 1013 |
| Psp5II | RGGWCCY | 1 cut(s) | 500 |
| Psp6I | CCWGG | 4 cut(s) | 75, 502, 670, 1143 |
| PspFI | CCCAGC | 1 cut(s) | 838 |
| PspGI | CCWGG | 4 cut(s) | 75, 502, 670, 1143 |
| PspN4I | GGNNCC | 5 cut(s) | 73, 182, 299, 884, 943 |
| PspPI | GGNCC | 4 cut(s) | 297, 500, 668, 796 |
| PspPPI | RGGWCCY | 1 cut(s) | 500 |
| PsuI | RGATCY | 3 cut(s) | 85, 586, 639 |
| RsaI | GTAC | 5 cut(s) | 62, 774, 826, 943, 1078 |
| RsaNI | GTAC | 5 cut(s) | 61, 773, 825, 942, 1077 |
| RseI | CAYNNNNRTG | 1 cut(s) | 69 |
| SaqAI | TTAA | 4 cut(s) | 644, 1067, 1179, 1191 |
| Sau96I | GGNCC | 4 cut(s) | 297, 500, 668, 796 |
| SchI | GAGTC | 2 cut(s) | 65, 697 |
| ScrFI | CCNGG | 4 cut(s) | 77, 504, 672, 1145 |
| SduI | GDGCHC | 2 cut(s) | 14, 76 |
| SfaNI | GCATC | 2 cut(s) | 481, 922 |
| SfuI | TTCGAA | 1 cut(s) | 377 |
| SinI | GGWCC | 2 cut(s) | 500, 796 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 69 |
| SphI | GCATGC | 1 cut(s) | 365 |
| Sse9I | AATT | 9 cut(s) | 27, 36, 136, 147, 232, 489, 694, 969, 1180 |
| SsiI | CCGC | 2 cut(s) | 83, 565 |
| SspMI | CTAG | 4 cut(s) | 101, 176, 822, 981 |
| StyD4I | CCNGG | 4 cut(s) | 75, 502, 670, 1143 |
| StyI | CCWWGG | 2 cut(s) | 207, 611 |
| TaaI | ACNGT | 2 cut(s) | 262, 463 |
| TaiI | ACGT | 2 cut(s) | 554, 1016 |
| TaqI | TCGA | 5 cut(s) | 186, 377, 480, 624, 870 |
| TasI | AATT | 9 cut(s) | 27, 36, 136, 147, 232, 489, 694, 969, 1180 |
| TatI | WGTACW | 1 cut(s) | 1076 |
| TfiI | GAWTC | 4 cut(s) | 254, 602, 791, 861 |
| Tru1I | TTAA | 4 cut(s) | 644, 1067, 1179, 1191 |
| Tru9I | TTAA | 4 cut(s) | 644, 1067, 1179, 1191 |
| TscAI | CASTG | 1 cut(s) | 943 |
| TseFI | GTSAC | 2 cut(s) | 167, 593 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 593 |
| TspDTI | ATGAA | 3 cut(s) | 17, 396, 453 |
| TspRI | CASTG | 1 cut(s) | 943 |
| VpaK11BI | GGWCC | 2 cut(s) | 500, 796 |
| VspI | ATTAAT | 1 cut(s) | 1179 |
| XapI | RAATTY | 2 cut(s) | 136, 694 |
| XceI | RCATGY | 4 cut(s) | 365, 531, 893, 1133 |
| XspI | CTAG | 4 cut(s) | 101, 176, 822, 981 |