Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 925 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1064 |
| AccI | GTMKAC | 2 cut(s) | 571, 1193 |
| AccII | CGCG | 1 cut(s) | 256 |
| AciI | CCGC | 1 cut(s) | 341 |
| AclWI | GGATC | 7 cut(s) | 109, 288, 301, 308, 372, 524, 537 |
| AcsI | RAATTY | 2 cut(s) | 808, 1167 |
| AcuI | CTGAAG | 1 cut(s) | 1218 |
| AcyI | GRCGYC | 1 cut(s) | 204 |
| AfaI | GTAC | 1 cut(s) | 1108 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 72, 216, 1064, 1221 |
| AgeI | ACCGGT | 1 cut(s) | 423 |
| AgsI | TTSAA | 7 cut(s) | 34, 53, 656, 807, 980, 1010, 1075 |
| AjnI | CCWGG | 3 cut(s) | 488, 929, 1113 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 877, 909 |
| Alw21I | GWGCWC | 2 cut(s) | 456, 550 |
| Alw26I | GTCTC | 3 cut(s) | 783, 911, 1021 |
| AlwI | GGATC | 7 cut(s) | 109, 288, 301, 308, 372, 524, 537 |
| AoxI | GGCC | 3 cut(s) | 560, 1077, 1212 |
| ApeKI | GCWGC | 7 cut(s) | 338, 538, 635, 847, 971, 1229, 1244 |
| ApoI | RAATTY | 2 cut(s) | 808, 1167 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 568, 600 |
| AsiGI | ACCGGT | 1 cut(s) | 423 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AspS9I | GGNCC | 1 cut(s) | 927 |
| AsuC2I | CCSGG | 4 cut(s) | 298, 319, 861, 1222 |
| AsuHPI | GGTGA | 1 cut(s) | 1247 |
| AsuII | TTCGAA | 2 cut(s) | 163, 590 |
| AvaII | GGWCC | 1 cut(s) | 927 |
| BamHI | GGATCC | 2 cut(s) | 293, 529 |
| BanII | GRGCYC | 3 cut(s) | 231, 456, 550 |
| Bbv12I | GWGCWC | 2 cut(s) | 456, 550 |
| BbvI | GCAGC | 7 cut(s) | 350, 525, 622, 859, 958, 1231, 1241 |
| BccI | CCATC | 8 cut(s) | 94, 284, 300, 920, 1030, 1082, 1096, 1198 |
| BciT130I | CCWGG | 3 cut(s) | 490, 931, 1115 |
| BcnI | CCSGG | 4 cut(s) | 298, 319, 861, 1222 |
| BcoDI | GTCTC | 3 cut(s) | 783, 911, 1021 |
| BfaI | CTAG | 3 cut(s) | 464, 543, 1199 |
| BfmI | CTRYAG | 1 cut(s) | 1245 |
| BisI | GCNGC | 7 cut(s) | 339, 539, 636, 848, 972, 1230, 1245 |
| BlsI | GCNGC | 7 cut(s) | 340, 540, 637, 849, 973, 1231, 1246 |
| Bme1390I | CCNGG | 7 cut(s) | 298, 319, 490, 861, 931, 1115, 1222 |
| Bme18I | GGWCC | 1 cut(s) | 927 |
| BmgT120I | GGNCC | 1 cut(s) | 927 |
| BmiI | GGNNCC | 5 cut(s) | 295, 399, 428, 531, 1053 |
| BmrFI | CCNGG | 7 cut(s) | 298, 319, 490, 861, 931, 1115, 1222 |
| BoxI | GACNNNNGTC | 1 cut(s) | 244 |
| BpmI | CTGGAG | 1 cut(s) | 401 |
| Bpu14I | TTCGAA | 2 cut(s) | 163, 590 |
| BpuEI | CTTGAG | 3 cut(s) | 662, 693, 771 |
| BpuMI | CCSGG | 4 cut(s) | 298, 319, 861, 1222 |
| BsaHI | GRCGYC | 1 cut(s) | 204 |
| BsaI | GGTCTC | 1 cut(s) | 783 |
| BsaJI | CCNNGG | 2 cut(s) | 533, 1114 |
| BsaWI | WCCGGW | 2 cut(s) | 423, 924 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 489, 519 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 72, 216, 1064, 1221 |
| Bse118I | RCCGGY | 1 cut(s) | 423 |
| Bse1I | ACTGG | 3 cut(s) | 1046, 1053, 1061 |
| Bse3DI | GCAATG | 1 cut(s) | 973 |
| BseBI | CCWGG | 3 cut(s) | 490, 931, 1115 |
| BseDI | CCNNGG | 2 cut(s) | 533, 1114 |
| BseGI | GGATG | 5 cut(s) | 295, 394, 508, 670, 1093 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 72, 216, 1064, 1221 |
| BseMI | GCAATG | 1 cut(s) | 973 |
| BseMII | CTCAG | 2 cut(s) | 525, 807 |
| BseNI | ACTGG | 3 cut(s) | 1046, 1053, 1061 |
| BseXI | GCAGC | 7 cut(s) | 350, 525, 622, 859, 958, 1231, 1241 |
| Bsh1236I | CGCG | 1 cut(s) | 256 |
| BshFI | GGCC | 3 cut(s) | 562, 1079, 1214 |
| BshTI | ACCGGT | 1 cut(s) | 423 |
| BsiHKAI | GWGCWC | 2 cut(s) | 456, 550 |
| BsiSI | CCGG | 6 cut(s) | 297, 318, 424, 860, 925, 1221 |
| BslFI | GGGAC | 1 cut(s) | 805 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 72, 216, 1064, 1221 |
| BsmAI | GTCTC | 3 cut(s) | 783, 911, 1021 |
| BsmFI | GGGAC | 1 cut(s) | 805 |
| BsnI | GGCC | 3 cut(s) | 562, 1079, 1214 |
| Bso31I | GGTCTC | 1 cut(s) | 783 |
| Bsp119I | TTCGAA | 2 cut(s) | 163, 590 |
| Bsp1286I | GDGCHC | 3 cut(s) | 231, 456, 550 |
| Bsp143I | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| Bsp68I | TCGCGA | 1 cut(s) | 256 |
| BspACI | CCGC | 1 cut(s) | 341 |
| BspANI | GGCC | 3 cut(s) | 562, 1079, 1214 |
| BspCNI | CTCAG | 2 cut(s) | 524, 808 |
| BspFNI | CGCG | 1 cut(s) | 256 |
| BspHI | TCATGA | 2 cut(s) | 550, 1310 |
| BspLI | GGNNCC | 5 cut(s) | 295, 399, 428, 531, 1053 |
| BspMAI | CTGCAG | 1 cut(s) | 1249 |
| BspPI | GGATC | 7 cut(s) | 109, 288, 301, 308, 372, 524, 537 |
| BspT104I | TTCGAA | 2 cut(s) | 163, 590 |
| BspTNI | GGTCTC | 1 cut(s) | 783 |
| BsrDI | GCAATG | 1 cut(s) | 973 |
| BsrFI | RCCGGY | 1 cut(s) | 423 |
| BsrI | ACTGG | 3 cut(s) | 1046, 1053, 1061 |
| BssAI | RCCGGY | 1 cut(s) | 423 |
| BssECI | CCNNGG | 2 cut(s) | 533, 1114 |
| BssMI | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| BssNAI | GTATAC | 1 cut(s) | 1194 |
| BssNI | GRCGYC | 1 cut(s) | 204 |
| BssT1I | CCWWGG | 1 cut(s) | 533 |
| Bst1107I | GTATAC | 1 cut(s) | 1194 |
| Bst2UI | CCWGG | 3 cut(s) | 490, 931, 1115 |
| Bst6I | CTCTTC | 1 cut(s) | 696 |
| BstACI | GRCGYC | 1 cut(s) | 204 |
| BstBI | TTCGAA | 2 cut(s) | 163, 590 |
| BstDEI | CTNAG | 3 cut(s) | 511, 566, 816 |
| BstEII | GGTNACC | 1 cut(s) | 855 |
| BstF5I | GGATG | 5 cut(s) | 295, 394, 508, 670, 1093 |
| BstFNI | CGCG | 1 cut(s) | 256 |
| BstKTI | GATC | 6 cut(s) | 117, 296, 303, 367, 463, 532 |
| BstMAI | GTCTC | 3 cut(s) | 783, 911, 1021 |
| BstMBI | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 82, 724, 963, 1226 |
| BstNI | CCWGG | 3 cut(s) | 490, 931, 1115 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 244 |
| BstPI | GGTNACC | 1 cut(s) | 855 |
| BstSCI | CCNGG | 7 cut(s) | 296, 317, 488, 859, 929, 1113, 1220 |
| BstSFI | CTRYAG | 1 cut(s) | 1245 |
| BstUI | CGCG | 1 cut(s) | 256 |
| BstV1I | GCAGC | 7 cut(s) | 350, 525, 622, 859, 958, 1231, 1241 |
| BstX2I | RGATCY | 4 cut(s) | 114, 293, 364, 529 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 831, 1068 |
| BstYI | RGATCY | 4 cut(s) | 114, 293, 364, 529 |
| BstZ17I | GTATAC | 1 cut(s) | 1194 |
| BsuRI | GGCC | 3 cut(s) | 562, 1079, 1214 |
| BtsCI | GGATG | 5 cut(s) | 295, 394, 508, 670, 1093 |
| BtsI | GCAGTG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 1 cut(s) | 291 |
| BtuMI | TCGCGA | 1 cut(s) | 256 |
| CciI | TCATGA | 2 cut(s) | 550, 1310 |
| Cfr10I | RCCGGY | 1 cut(s) | 423 |
| Cfr13I | GGNCC | 1 cut(s) | 927 |
| CseI | GACGC | 2 cut(s) | 193, 572 |
| Csp6I | GTAC | 1 cut(s) | 1107 |
| CspAI | ACCGGT | 1 cut(s) | 423 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1140, 1175 |
| CviAII | CATG | 7 cut(s) | 119, 518, 522, 551, 728, 878, 1311 |
| CviQI | GTAC | 1 cut(s) | 1107 |
| DdeI | CTNAG | 3 cut(s) | 511, 566, 816 |
| DpnI | GATC | 6 cut(s) | 116, 295, 302, 366, 462, 531 |
| DpnII | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| DraI | TTTAAA | 1 cut(s) | 1176 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 925 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 925 |
| Eam1104I | CTCTTC | 1 cut(s) | 696 |
| EarI | CTCTTC | 1 cut(s) | 696 |
| Ecl136II | GAGCTC | 2 cut(s) | 454, 548 |
| Eco130I | CCWWGG | 1 cut(s) | 533 |
| Eco147I | AGGCCT | 1 cut(s) | 1214 |
| Eco24I | GRGCYC | 3 cut(s) | 231, 456, 550 |
| Eco31I | GGTCTC | 1 cut(s) | 783 |
| Eco32I | GATATC | 1 cut(s) | 235 |
| Eco47I | GGWCC | 1 cut(s) | 927 |
| Eco53kI | GAGCTC | 2 cut(s) | 454, 548 |
| Eco57I | CTGAAG | 1 cut(s) | 1218 |
| Eco91I | GGTNACC | 1 cut(s) | 855 |
| EcoICRI | GAGCTC | 2 cut(s) | 454, 548 |
| EcoO65I | GGTNACC | 1 cut(s) | 855 |
| EcoRII | CCWGG | 3 cut(s) | 488, 929, 1113 |
| EcoRV | GATATC | 1 cut(s) | 235 |
| EcoT14I | CCWWGG | 1 cut(s) | 533 |
| EcoT22I | ATGCAT | 1 cut(s) | 523 |
| EcoT38I | GRGCYC | 3 cut(s) | 231, 456, 550 |
| ErhI | CCWWGG | 1 cut(s) | 533 |
| FaeI | CATG | 7 cut(s) | 122, 521, 525, 554, 731, 881, 1314 |
| FaqI | GGGAC | 1 cut(s) | 805 |
| FatI | CATG | 7 cut(s) | 118, 517, 521, 550, 727, 877, 1310 |
| FblI | GTMKAC | 2 cut(s) | 571, 1193 |
| Fnu4HI | GCNGC | 7 cut(s) | 339, 539, 636, 848, 972, 1230, 1245 |
| FokI | GGATG | 5 cut(s) | 302, 401, 515, 677, 1100 |
| FriOI | GRGCYC | 3 cut(s) | 231, 456, 550 |
| Fsp4HI | GCNGC | 7 cut(s) | 339, 539, 636, 848, 972, 1230, 1245 |
| FspBI | CTAG | 3 cut(s) | 464, 543, 1199 |
| GluI | GCNGC | 7 cut(s) | 339, 539, 636, 848, 972, 1230, 1245 |
| GsuI | CTGGAG | 1 cut(s) | 401 |
| HaeIII | GGCC | 3 cut(s) | 562, 1079, 1214 |
| HapII | CCGG | 6 cut(s) | 297, 318, 424, 860, 925, 1221 |
| HgaI | GACGC | 2 cut(s) | 193, 572 |
| Hin1I | GRCGYC | 1 cut(s) | 204 |
| Hin1II | CATG | 7 cut(s) | 122, 521, 525, 554, 731, 881, 1314 |
| HincII | GTYRAC | 1 cut(s) | 315 |
| HindII | GTYRAC | 1 cut(s) | 315 |
| HinfI | GANTC | 8 cut(s) | 45, 240, 676, 818, 919, 980, 1142, 1277 |
| HpaI | GTTAAC | 1 cut(s) | 315 |
| HpaII | CCGG | 6 cut(s) | 297, 318, 424, 860, 925, 1221 |
| HphI | GGTGA | 1 cut(s) | 1247 |
| Hpy166II | GTNNAC | 4 cut(s) | 315, 346, 572, 1194 |
| Hpy8I | GTNNAC | 4 cut(s) | 315, 346, 572, 1194 |
| Hpy99I | CGWCG | 1 cut(s) | 209 |
| HpyAV | CCTTC | 7 cut(s) | 182, 379, 586, 832, 928, 1032, 1069 |
| HpyCH4IV | ACGT | 2 cut(s) | 145, 447 |
| HpyCH4V | TGCA | 6 cut(s) | 24, 151, 437, 521, 966, 1247 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 82, 724, 963, 1226 |
| HpyF3I | CTNAG | 3 cut(s) | 511, 566, 816 |
| HpySE526I | ACGT | 2 cut(s) | 145, 447 |
| Hsp92I | GRCGYC | 1 cut(s) | 204 |
| Hsp92II | CATG | 7 cut(s) | 122, 521, 525, 554, 731, 881, 1314 |
| KspAI | GTTAAC | 1 cut(s) | 315 |
| Kzo9I | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| LmnI | GCTCC | 2 cut(s) | 476, 1091 |
| Lsp1109I | GCAGC | 7 cut(s) | 350, 525, 622, 859, 958, 1231, 1241 |
| MaeI | CTAG | 3 cut(s) | 464, 543, 1199 |
| MaeII | ACGT | 2 cut(s) | 145, 447 |
| MaeIII | GTNAC | 2 cut(s) | 128, 855 |
| MalI | GATC | 6 cut(s) | 116, 295, 302, 366, 462, 531 |
| MboI | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| MboII | GAAGA | 6 cut(s) | 359, 362, 683, 847, 888, 986 |
| MflI | RGATCY | 4 cut(s) | 114, 293, 364, 529 |
| MhlI | GDGCHC | 3 cut(s) | 231, 456, 550 |
| MluCI | AATT | 6 cut(s) | 19, 69, 152, 808, 1081, 1167 |
| MlyI | GAGTC | 5 cut(s) | 54, 234, 827, 913, 1286 |
| Mph1103I | ATGCAT | 1 cut(s) | 523 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MseI | TTAA | 3 cut(s) | 314, 1175, 1299 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspA1I | CMGCKG | 1 cut(s) | 341 |
| MspI | CCGG | 6 cut(s) | 297, 318, 424, 860, 925, 1221 |
| MspR9I | CCNGG | 7 cut(s) | 298, 319, 490, 861, 931, 1115, 1222 |
| MvaI | CCWGG | 3 cut(s) | 490, 931, 1115 |
| MvnI | CGCG | 1 cut(s) | 256 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 82, 724, 963, 1226 |
| NciI | CCSGG | 4 cut(s) | 298, 319, 861, 1222 |
| NdeII | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| NlaIII | CATG | 7 cut(s) | 122, 521, 525, 554, 731, 881, 1314 |
| NlaIV | GGNNCC | 5 cut(s) | 295, 399, 428, 531, 1053 |
| NruI | TCGCGA | 1 cut(s) | 256 |
| NsiI | ATGCAT | 1 cut(s) | 523 |
| NspV | TTCGAA | 2 cut(s) | 163, 590 |
| PagI | TCATGA | 2 cut(s) | 550, 1310 |
| PceI | AGGCCT | 1 cut(s) | 1214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 580 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 3 cut(s) | 676, 980, 1142 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1064 |
| PfoI | TCCNGGA | 2 cut(s) | 296, 929 |
| PinAI | ACCGGT | 1 cut(s) | 423 |
| PkrI | GCNGC | 7 cut(s) | 340, 540, 637, 849, 973, 1231, 1246 |
| PleI | GAGTC | 5 cut(s) | 53, 234, 826, 913, 1285 |
| PpsI | GAGTC | 5 cut(s) | 53, 234, 826, 913, 1285 |
| PshAI | GACNNNNGTC | 1 cut(s) | 244 |
| Psp124BI | GAGCTC | 2 cut(s) | 456, 550 |
| Psp6I | CCWGG | 3 cut(s) | 488, 929, 1113 |
| PspEI | GGTNACC | 1 cut(s) | 855 |
| PspGI | CCWGG | 3 cut(s) | 488, 929, 1113 |
| PspN4I | GGNNCC | 5 cut(s) | 295, 399, 428, 531, 1053 |
| PspPI | GGNCC | 1 cut(s) | 927 |
| PstI | CTGCAG | 1 cut(s) | 1249 |
| PsuI | RGATCY | 4 cut(s) | 114, 293, 364, 529 |
| RruI | TCGCGA | 1 cut(s) | 256 |
| RsaI | GTAC | 1 cut(s) | 1108 |
| RsaNI | GTAC | 1 cut(s) | 1107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SacI | GAGCTC | 2 cut(s) | 456, 550 |
| SaqAI | TTAA | 3 cut(s) | 314, 1175, 1299 |
| SatI | GCNGC | 7 cut(s) | 339, 539, 636, 848, 972, 1230, 1245 |
| Sau3AI | GATC | 6 cut(s) | 114, 293, 300, 364, 460, 529 |
| Sau96I | GGNCC | 1 cut(s) | 927 |
| SchI | GAGTC | 5 cut(s) | 54, 234, 827, 913, 1286 |
| ScrFI | CCNGG | 7 cut(s) | 298, 319, 490, 861, 931, 1115, 1222 |
| SduI | GDGCHC | 3 cut(s) | 231, 456, 550 |
| SfcI | CTRYAG | 1 cut(s) | 1245 |
| SfuI | TTCGAA | 2 cut(s) | 163, 590 |
| SinI | GGWCC | 1 cut(s) | 927 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| SmlI | CTYRAG | 3 cut(s) | 641, 708, 786 |
| SmoI | CTYRAG | 3 cut(s) | 641, 708, 786 |
| Sse9I | AATT | 6 cut(s) | 19, 69, 152, 808, 1081, 1167 |
| SseBI | AGGCCT | 1 cut(s) | 1214 |
| SsiI | CCGC | 1 cut(s) | 341 |
| SspMI | CTAG | 3 cut(s) | 464, 543, 1199 |
| SstI | GAGCTC | 2 cut(s) | 456, 550 |
| StuI | AGGCCT | 1 cut(s) | 1214 |
| StyD4I | CCNGG | 7 cut(s) | 296, 317, 488, 859, 929, 1113, 1220 |
| StyI | CCWWGG | 1 cut(s) | 533 |
| TaiI | ACGT | 2 cut(s) | 148, 450 |
| TaqI | TCGA | 9 cut(s) | 163, 231, 248, 373, 590, 694, 899, 915, 1025 |
| TaqII | GACCGA | 2 cut(s) | 138, 765 |
| TasI | AATT | 6 cut(s) | 19, 69, 152, 808, 1081, 1167 |
| TfiI | GAWTC | 3 cut(s) | 676, 980, 1142 |
| Tru1I | TTAA | 3 cut(s) | 314, 1175, 1299 |
| Tru9I | TTAA | 3 cut(s) | 314, 1175, 1299 |
| TscAI | CASTG | 1 cut(s) | 291 |
| TseI | GCWGC | 7 cut(s) | 338, 538, 635, 847, 971, 1229, 1244 |
| TspDTI | ATGAA | 6 cut(s) | 434, 506, 744, 801, 866, 1299 |
| TspGWI | ACGGA | 1 cut(s) | 677 |
| TspRI | CASTG | 1 cut(s) | 291 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1064 |
| VpaK11BI | GGWCC | 1 cut(s) | 927 |
| XapI | RAATTY | 2 cut(s) | 808, 1167 |
| XbaI | TCTAGA | 1 cut(s) | 1198 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1065, 1121 |
| XmiI | GTMKAC | 2 cut(s) | 571, 1193 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 3 cut(s) | 464, 543, 1199 |
| Zsp2I | ATGCAT | 1 cut(s) | 523 |