ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 417 |
| AccB1I | GGYRCC | 1 cut(s) | 544 |
| AciI | CCGC | 1 cut(s) | 401 |
| AclWI | GGATC | 2 cut(s) | 44, 502 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 100 |
| AgsI | TTSAA | 2 cut(s) | 245, 449 |
| AjnI | CCWGG | 1 cut(s) | 32 |
| AluBI | AGCT | 1 cut(s) | 281 |
| AluI | AGCT | 1 cut(s) | 281 |
| Alw21I | GWGCWC | 2 cut(s) | 375, 490 |
| Alw26I | GTCTC | 3 cut(s) | 16, 168, 320 |
| AlwI | GGATC | 2 cut(s) | 44, 502 |
| AoxI | GGCC | 1 cut(s) | 294 |
| AspS9I | GGNCC | 3 cut(s) | 222, 294, 551 |
| AsuC2I | CCSGG | 2 cut(s) | 101, 549 |
| AsuHPI | GGTGA | 1 cut(s) | 260 |
| AvaII | GGWCC | 2 cut(s) | 222, 551 |
| BaeGI | GKGCMC | 1 cut(s) | 106 |
| BanI | GGYRCC | 1 cut(s) | 544 |
| Bbv12I | GWGCWC | 2 cut(s) | 375, 490 |
| BccI | CCATC | 2 cut(s) | 176, 496 |
| BceAI | ACGGC | 1 cut(s) | 122 |
| BciT130I | CCWGG | 1 cut(s) | 34 |
| BciVI | GTATCC | 1 cut(s) | 543 |
| BclI | TGATCA | 1 cut(s) | 322 |
| BcnI | CCSGG | 2 cut(s) | 101, 549 |
| BcoDI | GTCTC | 3 cut(s) | 16, 168, 320 |
| BfaI | CTAG | 2 cut(s) | 239, 432 |
| BfuI | GTATCC | 1 cut(s) | 543 |
| Bme1390I | CCNGG | 3 cut(s) | 34, 101, 549 |
| Bme18I | GGWCC | 2 cut(s) | 222, 551 |
| BmgT120I | GGNCC | 3 cut(s) | 222, 294, 551 |
| BmiI | GGNNCC | 1 cut(s) | 546 |
| BmrFI | CCNGG | 3 cut(s) | 34, 101, 549 |
| BmsI | GCATC | 1 cut(s) | 62 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 148, 180, 357, 389 |
| BpuMI | CCSGG | 2 cut(s) | 101, 549 |
| BsaAI | YACGTR | 1 cut(s) | 207 |
| BsaBI | GATNNNNATC | 2 cut(s) | 417, 506 |
| BsaI | GGTCTC | 2 cut(s) | 16, 320 |
| BsaJI | CCNNGG | 3 cut(s) | 138, 225, 540 |
| BsaWI | WCCGGW | 2 cut(s) | 252, 510 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 191, 221, 497, 527 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 100 |
| Bse1I | ACTGG | 1 cut(s) | 195 |
| Bse8I | GATNNNNATC | 2 cut(s) | 417, 506 |
| BseBI | CCWGG | 1 cut(s) | 34 |
| BseDI | CCNNGG | 3 cut(s) | 138, 225, 540 |
| BseGI | GGATG | 2 cut(s) | 77, 187 |
| BseJI | GATNNNNATC | 2 cut(s) | 417, 506 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 429 |
| BseNI | ACTGG | 1 cut(s) | 195 |
| BseRI | GAGGAG | 1 cut(s) | 155 |
| BseSI | GKGCMC | 1 cut(s) | 106 |
| BshFI | GGCC | 1 cut(s) | 296 |
| BshNI | GGYRCC | 1 cut(s) | 544 |
| BsiHKAI | GWGCWC | 2 cut(s) | 375, 490 |
| BsiSI | CCGG | 4 cut(s) | 100, 253, 511, 549 |
| BslFI | GGGAC | 1 cut(s) | 419 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 100 |
| BsmAI | GTCTC | 3 cut(s) | 16, 168, 320 |
| BsmFI | GGGAC | 1 cut(s) | 419 |
| BsmI | GAATGC | 1 cut(s) | 478 |
| BsnI | GGCC | 1 cut(s) | 296 |
| Bso31I | GGTCTC | 2 cut(s) | 16, 320 |
| Bsp1286I | GDGCHC | 3 cut(s) | 106, 375, 490 |
| Bsp143I | GATC | 4 cut(s) | 36, 322, 478, 507 |
| BspACI | CCGC | 1 cut(s) | 401 |
| BspANI | GGCC | 1 cut(s) | 296 |
| BspCNI | CTCAG | 1 cut(s) | 430 |
| BspLI | GGNNCC | 1 cut(s) | 546 |
| BspPI | GGATC | 2 cut(s) | 44, 502 |
| BspT107I | GGYRCC | 1 cut(s) | 544 |
| BspTNI | GGTCTC | 2 cut(s) | 16, 320 |
| BsrI | ACTGG | 1 cut(s) | 195 |
| BssECI | CCNNGG | 3 cut(s) | 138, 225, 540 |
| BssMI | GATC | 4 cut(s) | 36, 322, 478, 507 |
| BssT1I | CCWWGG | 2 cut(s) | 225, 540 |
| Bst2UI | CCWGG | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 2 cut(s) | 222, 275 |
| BstBAI | YACGTR | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 1 cut(s) | 429 |
| BstDEI | CTNAG | 2 cut(s) | 261, 438 |
| BstEII | GGTNACC | 1 cut(s) | 248 |
| BstF5I | GGATG | 2 cut(s) | 77, 187 |
| BstKTI | GATC | 4 cut(s) | 39, 325, 481, 510 |
| BstMAI | GTCTC | 3 cut(s) | 16, 168, 320 |
| BstMBI | GATC | 4 cut(s) | 36, 322, 478, 507 |
| BstNI | CCWGG | 1 cut(s) | 34 |
| BstNSI | RCATGY | 2 cut(s) | 431, 565 |
| BstPI | GGTNACC | 1 cut(s) | 248 |
| BstSCI | CCNGG | 3 cut(s) | 32, 99, 547 |
| BstSLI | GKGCMC | 1 cut(s) | 106 |
| BstSNI | TACGTA | 1 cut(s) | 207 |
| BstX2I | RGATCY | 2 cut(s) | 36, 507 |
| BstYI | RGATCY | 2 cut(s) | 36, 507 |
| BsuI | GTATCC | 1 cut(s) | 543 |
| BsuRI | GGCC | 1 cut(s) | 296 |
| BtgZI | GCGATG | 1 cut(s) | 515 |
| BtsCI | GGATG | 2 cut(s) | 77, 187 |
| Cac8I | GCNNGC | 1 cut(s) | 429 |
| Cfr13I | GGNCC | 3 cut(s) | 222, 294, 551 |
| CviAII | CATG | 2 cut(s) | 428, 562 |
| CviJI | RGCY | 6 cut(s) | 109, 116, 238, 281, 296, 334 |
| CviKI_1 | RGCY | 6 cut(s) | 109, 116, 238, 281, 296, 334 |
| DdeI | CTNAG | 2 cut(s) | 261, 438 |
| DpnI | GATC | 4 cut(s) | 38, 324, 480, 509 |
| DpnII | GATC | 4 cut(s) | 36, 322, 478, 507 |
| Eco105I | TACGTA | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 2 cut(s) | 225, 540 |
| Eco31I | GGTCTC | 2 cut(s) | 16, 320 |
| Eco47I | GGWCC | 2 cut(s) | 222, 551 |
| Eco91I | GGTNACC | 1 cut(s) | 248 |
| EcoO65I | GGTNACC | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 2 cut(s) | 225, 540 |
| EcoT22I | ATGCAT | 2 cut(s) | 30, 429 |
| ErhI | CCWWGG | 2 cut(s) | 225, 540 |
| FaeI | CATG | 2 cut(s) | 431, 565 |
| FaqI | GGGAC | 1 cut(s) | 419 |
| FatI | CATG | 2 cut(s) | 427, 561 |
| FauI | CCCGC | 1 cut(s) | 394 |
| FauNDI | CATATG | 1 cut(s) | 423 |
| FbaI | TGATCA | 1 cut(s) | 322 |
| FokI | GGATG | 2 cut(s) | 84, 194 |
| FspBI | CTAG | 2 cut(s) | 239, 432 |
| HaeIII | GGCC | 1 cut(s) | 296 |
| HapII | CCGG | 4 cut(s) | 100, 253, 511, 549 |
| Hin1II | CATG | 2 cut(s) | 431, 565 |
| HindIII | AAGCTT | 1 cut(s) | 279 |
| HinfI | GANTC | 5 cut(s) | 79, 125, 301, 344, 445 |
| HpaII | CCGG | 4 cut(s) | 100, 253, 511, 549 |
| HphI | GGTGA | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 1 cut(s) | 124 |
| Hpy188III | TCNNGA | 3 cut(s) | 83, 326, 526 |
| HpyAV | CCTTC | 1 cut(s) | 239 |
| HpyCH4III | ACNGT | 2 cut(s) | 222, 275 |
| HpyCH4IV | ACGT | 2 cut(s) | 206, 408 |
| HpyCH4V | TGCA | 3 cut(s) | 28, 75, 427 |
| HpyF3I | CTNAG | 2 cut(s) | 261, 438 |
| HpySE526I | ACGT | 2 cut(s) | 206, 408 |
| Hsp92II | CATG | 2 cut(s) | 431, 565 |
| Ksp22I | TGATCA | 1 cut(s) | 322 |
| Kzo9I | GATC | 4 cut(s) | 36, 322, 478, 507 |
| LmnI | GCTCC | 2 cut(s) | 378, 493 |
| LweI | GCATC | 1 cut(s) | 62 |
| MaeI | CTAG | 2 cut(s) | 239, 432 |
| MaeII | ACGT | 2 cut(s) | 206, 408 |
| MaeIII | GTNAC | 2 cut(s) | 248, 457 |
| MalI | GATC | 4 cut(s) | 38, 324, 480, 509 |
| MboI | GATC | 4 cut(s) | 36, 322, 478, 507 |
| MflI | RGATCY | 2 cut(s) | 36, 507 |
| MhlI | GDGCHC | 3 cut(s) | 106, 375, 490 |
| MluCI | AATT | 3 cut(s) | 21, 49, 87 |
| MlyI | GAGTC | 2 cut(s) | 88, 338 |
| MmeI | TCCRAC | 1 cut(s) | 159 |
| MnlI | CCTC | 5 cut(s) | 130, 133, 322, 346, 355 |
| Mph1103I | ATGCAT | 2 cut(s) | 30, 429 |
| MslI | CAYNNNNRTG | 2 cut(s) | 426, 432 |
| MspI | CCGG | 4 cut(s) | 100, 253, 511, 549 |
| MspR9I | CCNGG | 3 cut(s) | 34, 101, 549 |
| Mva1269I | GAATGC | 1 cut(s) | 478 |
| MvaI | CCWGG | 1 cut(s) | 34 |
| NciI | CCSGG | 2 cut(s) | 101, 549 |
| NdeI | CATATG | 1 cut(s) | 423 |
| NdeII | GATC | 4 cut(s) | 36, 322, 478, 507 |
| NlaIII | CATG | 2 cut(s) | 431, 565 |
| NlaIV | GGNNCC | 1 cut(s) | 546 |
| NmuCI | GTSAC | 1 cut(s) | 248 |
| NsiI | ATGCAT | 2 cut(s) | 30, 429 |
| NspI | RCATGY | 2 cut(s) | 431, 565 |
| PaeI | GCATGC | 1 cut(s) | 431 |
| PctI | GAATGC | 1 cut(s) | 478 |
| PfeI | GAWTC | 3 cut(s) | 125, 301, 445 |
| PleI | GAGTC | 2 cut(s) | 87, 338 |
| PpsI | GAGTC | 2 cut(s) | 87, 338 |
| Ppu21I | YACGTR | 1 cut(s) | 207 |
| PsiI | TTATAA | 1 cut(s) | 417 |
| Psp6I | CCWGG | 1 cut(s) | 32 |
| PspEI | GGTNACC | 1 cut(s) | 248 |
| PspGI | CCWGG | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 1 cut(s) | 546 |
| PspPI | GGNCC | 3 cut(s) | 222, 294, 551 |
| PsuI | RGATCY | 2 cut(s) | 36, 507 |
| RseI | CAYNNNNRTG | 2 cut(s) | 426, 432 |
| Sau3AI | GATC | 4 cut(s) | 36, 322, 478, 507 |
| Sau96I | GGNCC | 3 cut(s) | 222, 294, 551 |
| SchI | GAGTC | 2 cut(s) | 88, 338 |
| ScrFI | CCNGG | 3 cut(s) | 34, 101, 549 |
| SduI | GDGCHC | 3 cut(s) | 106, 375, 490 |
| SetI | ASST | 7 cut(s) | 12, 209, 231, 250, 283, 411, 556 |
| SfaNI | GCATC | 1 cut(s) | 62 |
| SinI | GGWCC | 2 cut(s) | 222, 551 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 426, 432 |
| SmlI | CTYRAG | 1 cut(s) | 13 |
| SmoI | CTYRAG | 1 cut(s) | 13 |
| SnaBI | TACGTA | 1 cut(s) | 207 |
| SphI | GCATGC | 1 cut(s) | 431 |
| Sse9I | AATT | 3 cut(s) | 21, 49, 87 |
| SsiI | CCGC | 1 cut(s) | 401 |
| SspI | AATATT | 1 cut(s) | 380 |
| SspMI | CTAG | 2 cut(s) | 239, 432 |
| StyD4I | CCNGG | 3 cut(s) | 32, 99, 547 |
| StyI | CCWWGG | 2 cut(s) | 225, 540 |
| TaaI | ACNGT | 2 cut(s) | 222, 275 |
| TaiI | ACGT | 2 cut(s) | 209, 411 |
| TaqII | GACCGA | 2 cut(s) | 152, 302 |
| TasI | AATT | 3 cut(s) | 21, 49, 87 |
| TfiI | GAWTC | 3 cut(s) | 125, 301, 445 |
| TseFI | GTSAC | 1 cut(s) | 248 |
| Tsp45I | GTSAC | 1 cut(s) | 248 |
| TspDTI | ATGAA | 1 cut(s) | 485 |
| TspGWI | ACGGA | 1 cut(s) | 480 |
| VpaK11BI | GGWCC | 2 cut(s) | 222, 551 |
| XceI | RCATGY | 2 cut(s) | 431, 565 |
| XspI | CTAG | 2 cut(s) | 239, 432 |
| Zsp2I | ATGCAT | 2 cut(s) | 30, 429 |