ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 296 |
| AccB1I | GGYRCC | 2 cut(s) | 264, 296 |
| AccBSI | CCGCTC | 1 cut(s) | 220 |
| AciI | CCGC | 1 cut(s) | 218 |
| AclWI | GGATC | 1 cut(s) | 279 |
| AcsI | RAATTY | 1 cut(s) | 316 |
| AfaI | GTAC | 2 cut(s) | 298, 448 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| AgsI | TTSAA | 1 cut(s) | 130 |
| AjnI | CCWGG | 3 cut(s) | 49, 62, 92 |
| Alw26I | GTCTC | 2 cut(s) | 61, 317 |
| AlwI | GGATC | 1 cut(s) | 279 |
| AoxI | GGCC | 2 cut(s) | 113, 255 |
| ApeKI | GCWGC | 1 cut(s) | 436 |
| ApoI | RAATTY | 1 cut(s) | 316 |
| AseI | ATTAAT | 1 cut(s) | 210 |
| Asp718I | GGTACC | 1 cut(s) | 296 |
| AspA2I | CCTAGG | 1 cut(s) | 283 |
| AspS9I | GGNCC | 2 cut(s) | 215, 280 |
| AsuC2I | CCSGG | 1 cut(s) | 269 |
| AsuHPI | GGTGA | 1 cut(s) | 11 |
| AvaII | GGWCC | 2 cut(s) | 215, 280 |
| AvrII | CCTAGG | 1 cut(s) | 283 |
| BaeGI | GKGCMC | 1 cut(s) | 267 |
| BanI | GGYRCC | 2 cut(s) | 264, 296 |
| BbvI | GCAGC | 1 cut(s) | 423 |
| BceAI | ACGGC | 2 cut(s) | 43, 100 |
| BciT130I | CCWGG | 3 cut(s) | 51, 64, 94 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcnI | CCSGG | 1 cut(s) | 269 |
| BcoDI | GTCTC | 2 cut(s) | 61, 317 |
| BfaI | CTAG | 2 cut(s) | 284, 338 |
| BisI | GCNGC | 1 cut(s) | 437 |
| BlnI | CCTAGG | 1 cut(s) | 283 |
| BlsI | GCNGC | 1 cut(s) | 438 |
| Bme1390I | CCNGG | 4 cut(s) | 51, 64, 94, 269 |
| Bme18I | GGWCC | 2 cut(s) | 215, 280 |
| BmgT120I | GGNCC | 2 cut(s) | 215, 280 |
| BmiI | GGNNCC | 2 cut(s) | 266, 298 |
| BmrFI | CCNGG | 4 cut(s) | 51, 64, 94, 269 |
| BmrI | ACTGGG | 1 cut(s) | 402 |
| BmsI | GCATC | 1 cut(s) | 19 |
| BmuI | ACTGGG | 1 cut(s) | 402 |
| BpmI | CTGGAG | 1 cut(s) | 85 |
| BpuMI | CCSGG | 1 cut(s) | 269 |
| BsaJI | CCNNGG | 5 cut(s) | 49, 116, 158, 258, 283 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| Bse1I | ACTGG | 3 cut(s) | 282, 347, 408 |
| BseBI | CCWGG | 3 cut(s) | 51, 64, 94 |
| BseDI | CCNNGG | 5 cut(s) | 49, 116, 158, 258, 283 |
| BseGI | GGATG | 2 cut(s) | 34, 343 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| BseMII | CTCAG | 2 cut(s) | 235, 312 |
| BseNI | ACTGG | 3 cut(s) | 282, 347, 408 |
| BseSI | GKGCMC | 1 cut(s) | 267 |
| BseXI | GCAGC | 1 cut(s) | 423 |
| BsgI | GTGCAG | 1 cut(s) | 337 |
| BshFI | GGCC | 2 cut(s) | 115, 257 |
| BshNI | GGYRCC | 2 cut(s) | 264, 296 |
| BsiSI | CCGG | 1 cut(s) | 268 |
| BslFI | GGGAC | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 159, 160, 163 |
| BsmAI | GTCTC | 2 cut(s) | 61, 317 |
| BsmFI | GGGAC | 1 cut(s) | 19 |
| BsnI | GGCC | 2 cut(s) | 115, 257 |
| Bsp1286I | GDGCHC | 1 cut(s) | 267 |
| Bsp143I | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| BspACI | CCGC | 1 cut(s) | 218 |
| BspANI | GGCC | 2 cut(s) | 115, 257 |
| BspCNI | CTCAG | 2 cut(s) | 234, 313 |
| BspLI | GGNNCC | 2 cut(s) | 266, 298 |
| BspPI | GGATC | 1 cut(s) | 279 |
| BspT107I | GGYRCC | 2 cut(s) | 264, 296 |
| BsrBI | CCGCTC | 1 cut(s) | 220 |
| BsrI | ACTGG | 3 cut(s) | 282, 347, 408 |
| BssECI | CCNNGG | 5 cut(s) | 49, 116, 158, 258, 283 |
| BssMI | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| BssT1I | CCWWGG | 3 cut(s) | 158, 258, 283 |
| Bst2UI | CCWGG | 3 cut(s) | 51, 64, 94 |
| Bst4CI | ACNGT | 2 cut(s) | 100, 451 |
| BstC8I | GCNNGC | 2 cut(s) | 56, 441 |
| BstDEI | CTNAG | 2 cut(s) | 221, 321 |
| BstDSI | CCRYGG | 1 cut(s) | 116 |
| BstF5I | GGATG | 2 cut(s) | 34, 343 |
| BstKTI | GATC | 5 cut(s) | 145, 227, 274, 343, 421 |
| BstMAI | GTCTC | 2 cut(s) | 61, 317 |
| BstMBI | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| BstNI | CCWGG | 3 cut(s) | 51, 64, 94 |
| BstNSI | RCATGY | 1 cut(s) | 58 |
| BstSCI | CCNGG | 4 cut(s) | 49, 62, 92, 267 |
| BstSLI | GKGCMC | 1 cut(s) | 267 |
| BstV1I | GCAGC | 1 cut(s) | 423 |
| BstX2I | RGATCY | 1 cut(s) | 271 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 100 |
| BstYI | RGATCY | 1 cut(s) | 271 |
| BsuRI | GGCC | 2 cut(s) | 115, 257 |
| BtgI | CCRYGG | 1 cut(s) | 116 |
| BtsCI | GGATG | 2 cut(s) | 34, 343 |
| BtsIMutI | CAGTG | 1 cut(s) | 415 |
| Cac8I | GCNNGC | 2 cut(s) | 56, 441 |
| Cfr13I | GGNCC | 2 cut(s) | 215, 280 |
| Csp6I | GTAC | 2 cut(s) | 297, 447 |
| CviAII | CATG | 1 cut(s) | 55 |
| CviJI | RGCY | 7 cut(s) | 48, 87, 115, 140, 246, 257, 337 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 87, 115, 140, 246, 257, 337 |
| CviQI | GTAC | 2 cut(s) | 297, 447 |
| DdeI | CTNAG | 2 cut(s) | 221, 321 |
| DpnI | GATC | 5 cut(s) | 144, 226, 273, 342, 420 |
| DpnII | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| Eco130I | CCWWGG | 3 cut(s) | 158, 258, 283 |
| Eco147I | AGGCCT | 1 cut(s) | 257 |
| Eco32I | GATATC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 2 cut(s) | 215, 280 |
| EcoRI | GAATTC | 1 cut(s) | 316 |
| EcoRII | CCWGG | 3 cut(s) | 49, 62, 92 |
| EcoRV | GATATC | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 3 cut(s) | 158, 258, 283 |
| ErhI | CCWWGG | 3 cut(s) | 158, 258, 283 |
| FaeI | CATG | 1 cut(s) | 58 |
| FaiI | YATR | 9 cut(s) | 24, 26, 56, 84, 90, 384, 423, 425, 431 |
| FaqI | GGGAC | 1 cut(s) | 19 |
| FatI | CATG | 1 cut(s) | 54 |
| FauNDI | CATATG | 1 cut(s) | 24 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 1 cut(s) | 437 |
| FokI | GGATG | 2 cut(s) | 41, 330 |
| Fsp4HI | GCNGC | 1 cut(s) | 437 |
| FspBI | CTAG | 2 cut(s) | 284, 338 |
| GluI | GCNGC | 1 cut(s) | 437 |
| GsuI | CTGGAG | 1 cut(s) | 85 |
| HaeIII | GGCC | 2 cut(s) | 115, 257 |
| HapII | CCGG | 1 cut(s) | 268 |
| Hin1II | CATG | 1 cut(s) | 58 |
| HincII | GTYRAC | 1 cut(s) | 306 |
| HindII | GTYRAC | 1 cut(s) | 306 |
| HinfI | GANTC | 3 cut(s) | 69, 149, 413 |
| HpaII | CCGG | 1 cut(s) | 268 |
| HphI | GGTGA | 1 cut(s) | 11 |
| Hpy166II | GTNNAC | 1 cut(s) | 306 |
| Hpy188I | TCNGA | 4 cut(s) | 224, 229, 322, 418 |
| Hpy188III | TCNNGA | 2 cut(s) | 146, 251 |
| Hpy8I | GTNNAC | 1 cut(s) | 306 |
| HpyAV | CCTTC | 2 cut(s) | 124, 369 |
| HpyCH4III | ACNGT | 2 cut(s) | 100, 451 |
| HpyCH4IV | ACGT | 3 cut(s) | 11, 232, 308 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 354, 386, 443 |
| HpyF3I | CTNAG | 2 cut(s) | 221, 321 |
| HpySE526I | ACGT | 3 cut(s) | 11, 232, 308 |
| Hsp92II | CATG | 1 cut(s) | 58 |
| KpnI | GGTACC | 1 cut(s) | 300 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| Kzo9I | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| Lsp1109I | GCAGC | 1 cut(s) | 423 |
| LweI | GCATC | 1 cut(s) | 19 |
| MaeI | CTAG | 2 cut(s) | 284, 338 |
| MaeII | ACGT | 3 cut(s) | 11, 232, 308 |
| MaeIII | GTNAC | 1 cut(s) | 410 |
| MalI | GATC | 5 cut(s) | 144, 226, 273, 342, 420 |
| MbiI | CCGCTC | 1 cut(s) | 220 |
| MboI | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| MflI | RGATCY | 1 cut(s) | 271 |
| MhlI | GDGCHC | 1 cut(s) | 267 |
| MluCI | AATT | 3 cut(s) | 316, 456, 463 |
| MlyI | GAGTC | 2 cut(s) | 63, 407 |
| MnlI | CCTC | 4 cut(s) | 164, 236, 247, 327 |
| MseI | TTAA | 3 cut(s) | 180, 191, 210 |
| MslI | CAYNNNNRTG | 1 cut(s) | 27 |
| MspI | CCGG | 1 cut(s) | 268 |
| MspR9I | CCNGG | 4 cut(s) | 51, 64, 94, 269 |
| MvaI | CCWGG | 3 cut(s) | 51, 64, 94 |
| NciI | CCSGG | 1 cut(s) | 269 |
| NdeI | CATATG | 1 cut(s) | 24 |
| NdeII | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| NlaIII | CATG | 1 cut(s) | 58 |
| NlaIV | GGNNCC | 2 cut(s) | 266, 298 |
| NmuCI | GTSAC | 1 cut(s) | 410 |
| NspI | RCATGY | 1 cut(s) | 58 |
| PaeI | GCATGC | 1 cut(s) | 58 |
| PceI | AGGCCT | 1 cut(s) | 257 |
| PfeI | GAWTC | 1 cut(s) | 149 |
| PflFI | GACNNNGTC | 1 cut(s) | 10 |
| PfoI | TCCNGGA | 1 cut(s) | 62 |
| PkrI | GCNGC | 1 cut(s) | 438 |
| PleI | GAGTC | 2 cut(s) | 63, 407 |
| PpsI | GAGTC | 2 cut(s) | 63, 407 |
| PshBI | ATTAAT | 1 cut(s) | 210 |
| Psp6I | CCWGG | 3 cut(s) | 49, 62, 92 |
| PspGI | CCWGG | 3 cut(s) | 49, 62, 92 |
| PspN4I | GGNNCC | 2 cut(s) | 266, 298 |
| PspPI | GGNCC | 2 cut(s) | 215, 280 |
| PsuI | RGATCY | 1 cut(s) | 271 |
| PsyI | GACNNNGTC | 1 cut(s) | 10 |
| RsaI | GTAC | 2 cut(s) | 298, 448 |
| RsaNI | GTAC | 2 cut(s) | 297, 447 |
| RseI | CAYNNNNRTG | 1 cut(s) | 27 |
| SaqAI | TTAA | 3 cut(s) | 180, 191, 210 |
| SatI | GCNGC | 1 cut(s) | 437 |
| Sau3AI | GATC | 5 cut(s) | 142, 224, 271, 340, 418 |
| Sau96I | GGNCC | 2 cut(s) | 215, 280 |
| SchI | GAGTC | 2 cut(s) | 63, 407 |
| ScrFI | CCNGG | 4 cut(s) | 51, 64, 94, 269 |
| SduI | GDGCHC | 1 cut(s) | 267 |
| SetI | ASST | 7 cut(s) | 14, 79, 235, 285, 311, 361, 393 |
| SfaNI | GCATC | 1 cut(s) | 19 |
| SinI | GGWCC | 2 cut(s) | 215, 280 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 27 |
| SphI | GCATGC | 1 cut(s) | 58 |
| Sse9I | AATT | 3 cut(s) | 316, 456, 463 |
| SseBI | AGGCCT | 1 cut(s) | 257 |
| SsiI | CCGC | 1 cut(s) | 218 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 2 cut(s) | 284, 338 |
| StuI | AGGCCT | 1 cut(s) | 257 |
| StyD4I | CCNGG | 4 cut(s) | 49, 62, 92, 267 |
| StyI | CCWWGG | 3 cut(s) | 158, 258, 283 |
| TaaI | ACNGT | 2 cut(s) | 100, 451 |
| TaiI | ACGT | 3 cut(s) | 14, 235, 311 |
| TasI | AATT | 3 cut(s) | 316, 456, 463 |
| TatI | WGTACW | 1 cut(s) | 446 |
| TfiI | GAWTC | 1 cut(s) | 149 |
| Tru1I | TTAA | 3 cut(s) | 180, 191, 210 |
| Tru9I | TTAA | 3 cut(s) | 180, 191, 210 |
| TscAI | CASTG | 1 cut(s) | 415 |
| TseFI | GTSAC | 1 cut(s) | 410 |
| TseI | GCWGC | 1 cut(s) | 436 |
| Tsp45I | GTSAC | 1 cut(s) | 410 |
| TspDTI | ATGAA | 1 cut(s) | 386 |
| TspRI | CASTG | 1 cut(s) | 415 |
| Tth111I | GACNNNGTC | 1 cut(s) | 10 |
| VpaK11BI | GGWCC | 2 cut(s) | 215, 280 |
| VspI | ATTAAT | 1 cut(s) | 210 |
| XapI | RAATTY | 1 cut(s) | 316 |
| XceI | RCATGY | 1 cut(s) | 58 |
| XmaJI | CCTAGG | 1 cut(s) | 283 |
| XspI | CTAG | 2 cut(s) | 284, 338 |