ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 649, 809 |
| AccI | GTMKAC | 1 cut(s) | 127 |
| AccII | CGCG | 1 cut(s) | 176 |
| AciI | CCGC | 1 cut(s) | 176 |
| AclWI | GGATC | 6 cut(s) | 78, 235, 374, 537, 550, 620 |
| AcoI | YGGCCR | 1 cut(s) | 331 |
| AcsI | RAATTY | 2 cut(s) | 145, 562 |
| AcuI | CTGAAG | 1 cut(s) | 478 |
| AfaI | GTAC | 3 cut(s) | 343, 796, 845 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 57, 609, 634 |
| AgsI | TTSAA | 4 cut(s) | 67, 134, 142, 740 |
| AjiI | CACGTC | 1 cut(s) | 555 |
| AjnI | CCWGG | 2 cut(s) | 56, 458 |
| AluBI | AGCT | 2 cut(s) | 698, 788 |
| AluI | AGCT | 2 cut(s) | 698, 788 |
| Alw26I | GTCTC | 4 cut(s) | 107, 414, 808, 872 |
| AlwI | GGATC | 6 cut(s) | 78, 235, 374, 537, 550, 620 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 662 |
| Ama87I | CYCGRG | 1 cut(s) | 805 |
| AoxI | GGCC | 3 cut(s) | 331, 461, 720 |
| ApaI | GGGCCC | 1 cut(s) | 724 |
| ApeKI | GCWGC | 5 cut(s) | 373, 624, 754, 785, 827 |
| ApoI | RAATTY | 2 cut(s) | 145, 562 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 46, 78 |
| AspA2I | CCTAGG | 1 cut(s) | 716 |
| AspS9I | GGNCC | 3 cut(s) | 586, 720, 721 |
| AsuC2I | CCSGG | 1 cut(s) | 590 |
| AsuHPI | GGTGA | 3 cut(s) | 424, 649, 848 |
| AvaI | CYCGRG | 1 cut(s) | 805 |
| AvaII | GGWCC | 1 cut(s) | 586 |
| AvrII | CCTAGG | 1 cut(s) | 716 |
| BaeGI | GKGCMC | 2 cut(s) | 724, 812 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 786, 819 |
| BalI | TGGCCA | 1 cut(s) | 333 |
| BamHI | GGATCC | 1 cut(s) | 542 |
| BanI | GGYRCC | 2 cut(s) | 649, 809 |
| BanII | GRGCYC | 1 cut(s) | 724 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 827, 859 |
| BbvI | GCAGC | 5 cut(s) | 360, 636, 766, 797, 814 |
| BccI | CCATC | 3 cut(s) | 313, 732, 764 |
| BciT130I | CCWGG | 2 cut(s) | 58, 460 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcnI | CCSGG | 1 cut(s) | 590 |
| BcoDI | GTCTC | 4 cut(s) | 107, 414, 808, 872 |
| BfaI | CTAG | 4 cut(s) | 633, 717, 849, 860 |
| BisI | GCNGC | 5 cut(s) | 374, 625, 755, 786, 828 |
| BlnI | CCTAGG | 1 cut(s) | 716 |
| BlpI | GCTNAGC | 1 cut(s) | 17 |
| BlsI | GCNGC | 5 cut(s) | 375, 626, 756, 787, 829 |
| Bme1390I | CCNGG | 3 cut(s) | 58, 460, 590 |
| Bme18I | GGWCC | 1 cut(s) | 586 |
| BmeT110I | CYCGRG | 1 cut(s) | 805 |
| BmgBI | CACGTC | 1 cut(s) | 555 |
| BmgT120I | GGNCC | 3 cut(s) | 586, 720, 721 |
| BmiI | GGNNCC | 4 cut(s) | 544, 651, 722, 811 |
| BmrFI | CCNGG | 3 cut(s) | 58, 460, 590 |
| BmsI | GCATC | 4 cut(s) | 37, 274, 322, 474 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 682, 714 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 17 |
| BpuMI | CCSGG | 1 cut(s) | 590 |
| Bsa29I | ATCGAT | 1 cut(s) | 615 |
| BsaAI | YACGTR | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 4 cut(s) | 57, 404, 546, 716 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 170, 200 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 57, 609, 634 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| BseBI | CCWGG | 2 cut(s) | 58, 460 |
| BseCI | ATCGAT | 1 cut(s) | 615 |
| BseDI | CCNNGG | 4 cut(s) | 57, 404, 546, 716 |
| BseGI | GGATG | 2 cut(s) | 16, 805 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 57, 609, 634 |
| BseMII | CTCAG | 1 cut(s) | 669 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseRI | GAGGAG | 2 cut(s) | 194, 690 |
| BseSI | GKGCMC | 2 cut(s) | 724, 812 |
| BseXI | GCAGC | 5 cut(s) | 360, 636, 766, 797, 814 |
| Bsh1236I | CGCG | 1 cut(s) | 176 |
| BshFI | GGCC | 3 cut(s) | 333, 463, 722 |
| BshNI | GGYRCC | 2 cut(s) | 649, 809 |
| BshVI | ATCGAT | 1 cut(s) | 615 |
| BsiHKCI | CYCGRG | 1 cut(s) | 805 |
| BsiSI | CCGG | 1 cut(s) | 589 |
| BslFI | GGGAC | 2 cut(s) | 265, 313 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 57, 609, 634 |
| BsmAI | GTCTC | 4 cut(s) | 107, 414, 808, 872 |
| BsmBI | CGTCTC | 1 cut(s) | 107 |
| BsmFI | GGGAC | 2 cut(s) | 265, 313 |
| BsnI | GGCC | 3 cut(s) | 333, 463, 722 |
| BsoBI | CYCGRG | 1 cut(s) | 805 |
| Bsp120I | GGGCCC | 1 cut(s) | 720 |
| Bsp1286I | GDGCHC | 2 cut(s) | 724, 812 |
| Bsp1407I | TGTACA | 1 cut(s) | 843 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 17 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| BspACI | CCGC | 1 cut(s) | 176 |
| BspANI | GGCC | 3 cut(s) | 333, 463, 722 |
| BspCNI | CTCAG | 1 cut(s) | 668 |
| BspDI | ATCGAT | 1 cut(s) | 615 |
| BspFNI | CGCG | 1 cut(s) | 176 |
| BspLI | GGNNCC | 4 cut(s) | 544, 651, 722, 811 |
| BspPI | GGATC | 6 cut(s) | 78, 235, 374, 537, 550, 620 |
| BspT107I | GGYRCC | 2 cut(s) | 649, 809 |
| BsrGI | TGTACA | 1 cut(s) | 843 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssECI | CCNNGG | 4 cut(s) | 57, 404, 546, 716 |
| BssT1I | CCWWGG | 3 cut(s) | 404, 546, 716 |
| Bst2UI | CCWGG | 2 cut(s) | 58, 460 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 27, 373 |
| BstAUI | TGTACA | 1 cut(s) | 843 |
| BstBAI | YACGTR | 1 cut(s) | 152 |
| BstDEI | CTNAG | 2 cut(s) | 17, 655 |
| BstDSI | CCRYGG | 1 cut(s) | 546 |
| BstF5I | GGATG | 2 cut(s) | 16, 805 |
| BstFNI | CGCG | 1 cut(s) | 176 |
| BstMAI | GTCTC | 4 cut(s) | 107, 414, 808, 872 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 27, 373, 695 |
| BstNI | CCWGG | 2 cut(s) | 58, 460 |
| BstNSI | RCATGY | 1 cut(s) | 689 |
| BstSCI | CCNGG | 3 cut(s) | 56, 458, 588 |
| BstSLI | GKGCMC | 2 cut(s) | 724, 812 |
| BstSNI | TACGTA | 1 cut(s) | 152 |
| BstUI | CGCG | 1 cut(s) | 176 |
| BstV1I | GCAGC | 5 cut(s) | 360, 636, 766, 797, 814 |
| BstX2I | RGATCY | 3 cut(s) | 70, 240, 542 |
| BstYI | RGATCY | 3 cut(s) | 70, 240, 542 |
| Bsu15I | ATCGAT | 1 cut(s) | 615 |
| BsuRI | GGCC | 3 cut(s) | 333, 463, 722 |
| BsuTUI | ATCGAT | 1 cut(s) | 615 |
| BtgI | CCRYGG | 1 cut(s) | 546 |
| BtrI | CACGTC | 1 cut(s) | 555 |
| BtsCI | GGATG | 2 cut(s) | 16, 805 |
| CaiI | CAGNNNCTG | 1 cut(s) | 662 |
| Cfr13I | GGNCC | 3 cut(s) | 586, 720, 721 |
| ClaI | ATCGAT | 1 cut(s) | 615 |
| Csp6I | GTAC | 3 cut(s) | 342, 795, 844 |
| CviAII | CATG | 8 cut(s) | 100, 245, 335, 363, 547, 668, 686, 841 |
| CviQI | GTAC | 3 cut(s) | 342, 795, 844 |
| DdeI | CTNAG | 2 cut(s) | 17, 655 |
| EaeI | YGGCCR | 1 cut(s) | 331 |
| Eco105I | TACGTA | 1 cut(s) | 152 |
| Eco130I | CCWWGG | 3 cut(s) | 404, 546, 716 |
| Eco147I | AGGCCT | 1 cut(s) | 463 |
| Eco24I | GRGCYC | 1 cut(s) | 724 |
| Eco47I | GGWCC | 1 cut(s) | 586 |
| Eco57I | CTGAAG | 1 cut(s) | 478 |
| Eco88I | CYCGRG | 1 cut(s) | 805 |
| EcoO109I | RGGNCCY | 1 cut(s) | 720 |
| EcoRI | GAATTC | 1 cut(s) | 562 |
| EcoRII | CCWGG | 2 cut(s) | 56, 458 |
| EcoT14I | CCWWGG | 3 cut(s) | 404, 546, 716 |
| EcoT38I | GRGCYC | 1 cut(s) | 724 |
| ErhI | CCWWGG | 3 cut(s) | 404, 546, 716 |
| Esp3I | CGTCTC | 1 cut(s) | 107 |
| FaeI | CATG | 8 cut(s) | 103, 248, 338, 366, 550, 671, 689, 844 |
| FaqI | GGGAC | 2 cut(s) | 265, 313 |
| FatI | CATG | 8 cut(s) | 99, 244, 334, 362, 546, 667, 685, 840 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FblI | GTMKAC | 1 cut(s) | 127 |
| Fnu4HI | GCNGC | 5 cut(s) | 374, 625, 755, 786, 828 |
| FokI | GGATG | 2 cut(s) | 23, 812 |
| FriOI | GRGCYC | 1 cut(s) | 724 |
| Fsp4HI | GCNGC | 5 cut(s) | 374, 625, 755, 786, 828 |
| FspBI | CTAG | 4 cut(s) | 633, 717, 849, 860 |
| GluI | GCNGC | 5 cut(s) | 374, 625, 755, 786, 828 |
| HaeIII | GGCC | 3 cut(s) | 333, 463, 722 |
| HapII | CCGG | 1 cut(s) | 589 |
| Hin1II | CATG | 8 cut(s) | 103, 248, 338, 366, 550, 671, 689, 844 |
| HinfI | GANTC | 9 cut(s) | 36, 301, 395, 433, 640, 659, 691, 853, 889 |
| HpaII | CCGG | 1 cut(s) | 589 |
| HphI | GGTGA | 3 cut(s) | 424, 649, 848 |
| Hpy166II | GTNNAC | 3 cut(s) | 92, 128, 846 |
| Hpy188I | TCNGA | 7 cut(s) | 318, 388, 438, 568, 658, 664, 917 |
| Hpy188III | TCNNGA | 1 cut(s) | 223 |
| Hpy8I | GTNNAC | 3 cut(s) | 92, 128, 846 |
| Hpy99I | CGWCG | 1 cut(s) | 556 |
| HpyAV | CCTTC | 1 cut(s) | 61 |
| HpyCH4IV | ACGT | 3 cut(s) | 151, 554, 580 |
| HpyCH4V | TGCA | 8 cut(s) | 30, 42, 265, 487, 600, 624, 710, 754 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 27, 373, 695 |
| HpyF3I | CTNAG | 2 cut(s) | 17, 655 |
| HpySE526I | ACGT | 3 cut(s) | 151, 554, 580 |
| Hsp92II | CATG | 8 cut(s) | 103, 248, 338, 366, 550, 671, 689, 844 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| LmnI | GCTCC | 1 cut(s) | 703 |
| Lsp1109I | GCAGC | 5 cut(s) | 360, 636, 766, 797, 814 |
| LweI | GCATC | 4 cut(s) | 37, 274, 322, 474 |
| MaeI | CTAG | 4 cut(s) | 633, 717, 849, 860 |
| MaeII | ACGT | 3 cut(s) | 151, 554, 580 |
| MaeIII | GTNAC | 2 cut(s) | 576, 681 |
| MboII | GAAGA | 6 cut(s) | 130, 146, 250, 463, 844, 847 |
| MfeI | CAATTG | 2 cut(s) | 368, 896 |
| MflI | RGATCY | 3 cut(s) | 70, 240, 542 |
| MhlI | GDGCHC | 2 cut(s) | 724, 812 |
| MlsI | TGGCCA | 1 cut(s) | 333 |
| MluCI | AATT | 5 cut(s) | 25, 145, 368, 562, 896 |
| MluNI | TGGCCA | 1 cut(s) | 333 |
| MlyI | GAGTC | 4 cut(s) | 295, 653, 700, 898 |
| MnlI | CCTC | 9 cut(s) | 26, 172, 175, 200, 394, 471, 493, 664, 711 |
| Mox20I | TGGCCA | 1 cut(s) | 333 |
| MscI | TGGCCA | 1 cut(s) | 333 |
| MseI | TTAA | 3 cut(s) | 426, 732, 885 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 815 |
| Msp20I | TGGCCA | 1 cut(s) | 333 |
| MspI | CCGG | 1 cut(s) | 589 |
| MspR9I | CCNGG | 3 cut(s) | 58, 460, 590 |
| MunI | CAATTG | 2 cut(s) | 368, 896 |
| MvaI | CCWGG | 2 cut(s) | 58, 460 |
| MvnI | CGCG | 1 cut(s) | 176 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 27, 373, 695 |
| NciI | CCSGG | 1 cut(s) | 590 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NlaIII | CATG | 8 cut(s) | 103, 248, 338, 366, 550, 671, 689, 844 |
| NlaIV | GGNNCC | 4 cut(s) | 544, 651, 722, 811 |
| NspI | RCATGY | 1 cut(s) | 689 |
| PceI | AGGCCT | 1 cut(s) | 463 |
| PfeI | GAWTC | 5 cut(s) | 36, 395, 433, 640, 853 |
| PkrI | GCNGC | 5 cut(s) | 375, 626, 756, 787, 829 |
| PleI | GAGTC | 4 cut(s) | 295, 653, 699, 897 |
| PpsI | GAGTC | 4 cut(s) | 295, 653, 699, 897 |
| Ppu21I | YACGTR | 1 cut(s) | 152 |
| Psp6I | CCWGG | 2 cut(s) | 56, 458 |
| PspGI | CCWGG | 2 cut(s) | 56, 458 |
| PspN4I | GGNNCC | 4 cut(s) | 544, 651, 722, 811 |
| PspOMI | GGGCCC | 1 cut(s) | 720 |
| PspPI | GGNCC | 3 cut(s) | 586, 720, 721 |
| PstNI | CAGNNNCTG | 1 cut(s) | 662 |
| PsuI | RGATCY | 3 cut(s) | 70, 240, 542 |
| RsaI | GTAC | 3 cut(s) | 343, 796, 845 |
| RsaNI | GTAC | 3 cut(s) | 342, 795, 844 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 815 |
| SaqAI | TTAA | 3 cut(s) | 426, 732, 885 |
| SatI | GCNGC | 5 cut(s) | 374, 625, 755, 786, 828 |
| Sau96I | GGNCC | 3 cut(s) | 586, 720, 721 |
| SchI | GAGTC | 4 cut(s) | 295, 653, 700, 898 |
| ScrFI | CCNGG | 3 cut(s) | 58, 460, 590 |
| SduI | GDGCHC | 2 cut(s) | 724, 812 |
| SetI | ASST | 9 cut(s) | 154, 186, 393, 557, 583, 700, 718, 790, 861 |
| SfaNI | GCATC | 4 cut(s) | 37, 274, 322, 474 |
| SinI | GGWCC | 1 cut(s) | 586 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 815 |
| SnaBI | TACGTA | 1 cut(s) | 152 |
| Sse9I | AATT | 5 cut(s) | 25, 145, 368, 562, 896 |
| SseBI | AGGCCT | 1 cut(s) | 463 |
| SsiI | CCGC | 1 cut(s) | 176 |
| SspMI | CTAG | 4 cut(s) | 633, 717, 849, 860 |
| StuI | AGGCCT | 1 cut(s) | 463 |
| StyD4I | CCNGG | 3 cut(s) | 56, 458, 588 |
| StyI | CCWWGG | 3 cut(s) | 404, 546, 716 |
| TaiI | ACGT | 3 cut(s) | 154, 557, 583 |
| TaqI | TCGA | 2 cut(s) | 469, 615 |
| TasI | AATT | 5 cut(s) | 25, 145, 368, 562, 896 |
| TatI | WGTACW | 1 cut(s) | 843 |
| TfiI | GAWTC | 5 cut(s) | 36, 395, 433, 640, 853 |
| Tru1I | TTAA | 3 cut(s) | 426, 732, 885 |
| Tru9I | TTAA | 3 cut(s) | 426, 732, 885 |
| TseI | GCWGC | 5 cut(s) | 373, 624, 754, 785, 827 |
| TspDTI | ATGAA | 3 cut(s) | 246, 531, 632 |
| TspGWI | ACGGA | 1 cut(s) | 812 |
| VpaK11BI | GGWCC | 1 cut(s) | 586 |
| XapI | RAATTY | 2 cut(s) | 145, 562 |
| XceI | RCATGY | 1 cut(s) | 689 |
| XmaJI | CCTAGG | 1 cut(s) | 716 |
| XmiI | GTMKAC | 1 cut(s) | 127 |
| XspI | CTAG | 4 cut(s) | 633, 717, 849, 860 |