ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 87 |
| Acc65I | GGTACC | 1 cut(s) | 234 |
| AccB1I | GGYRCC | 1 cut(s) | 234 |
| AccI | GTMKAC | 1 cut(s) | 439 |
| AccII | CGCG | 2 cut(s) | 108, 229 |
| AciI | CCGC | 1 cut(s) | 91 |
| AclWI | GGATC | 4 cut(s) | 111, 189, 452, 465 |
| AcsI | RAATTY | 2 cut(s) | 257, 354 |
| AcuI | CTGAAG | 2 cut(s) | 416, 428 |
| AcyI | GRCGYC | 1 cut(s) | 241 |
| AfaI | GTAC | 1 cut(s) | 236 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 177, 284 |
| AflIII | ACRYGT | 1 cut(s) | 227 |
| AgsI | TTSAA | 2 cut(s) | 257, 300 |
| AjnI | CCWGG | 2 cut(s) | 365, 383 |
| AlwI | GGATC | 4 cut(s) | 111, 189, 452, 465 |
| AoxI | GGCC | 1 cut(s) | 447 |
| ApeKI | GCWGC | 1 cut(s) | 388 |
| ApoI | RAATTY | 2 cut(s) | 257, 354 |
| Asp718I | GGTACC | 1 cut(s) | 234 |
| AspA2I | CCTAGG | 1 cut(s) | 464 |
| AspLEI | GCGC | 1 cut(s) | 110 |
| AvrII | CCTAGG | 1 cut(s) | 464 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 226, 259 |
| BamHI | GGATCC | 1 cut(s) | 457 |
| BanI | GGYRCC | 1 cut(s) | 234 |
| BauI | CACGAG | 1 cut(s) | 485 |
| BbvCI | CCTCAGC | 1 cut(s) | 118 |
| BbvI | GCAGC | 1 cut(s) | 400 |
| BccI | CCATC | 1 cut(s) | 336 |
| BciT130I | CCWGG | 2 cut(s) | 367, 385 |
| BfaI | CTAG | 2 cut(s) | 150, 465 |
| BfuAI | ACCTGC | 1 cut(s) | 87 |
| BisI | GCNGC | 1 cut(s) | 389 |
| BlnI | CCTAGG | 1 cut(s) | 464 |
| BlsI | GCNGC | 1 cut(s) | 390 |
| Bme1390I | CCNGG | 2 cut(s) | 367, 385 |
| BmiI | GGNNCC | 4 cut(s) | 61, 168, 236, 459 |
| BmrFI | CCNGG | 2 cut(s) | 367, 385 |
| BmsI | GCATC | 2 cut(s) | 7, 466 |
| Bpu10I | CCTNAGC | 1 cut(s) | 118 |
| BsaHI | GRCGYC | 1 cut(s) | 241 |
| BsaJI | CCNNGG | 1 cut(s) | 464 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 177, 284 |
| Bse118I | RCCGGY | 1 cut(s) | 237 |
| BseBI | CCWGG | 2 cut(s) | 367, 385 |
| BseDI | CCNNGG | 1 cut(s) | 464 |
| BseGI | GGATG | 3 cut(s) | 22, 186, 328 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 177, 284 |
| BseMII | CTCAG | 2 cut(s) | 132, 497 |
| BseXI | GCAGC | 1 cut(s) | 400 |
| BsgI | GTGCAG | 1 cut(s) | 115 |
| Bsh1236I | CGCG | 2 cut(s) | 108, 229 |
| BshFI | GGCC | 1 cut(s) | 449 |
| BshNI | GGYRCC | 1 cut(s) | 234 |
| BsiSI | CCGG | 1 cut(s) | 238 |
| BslFI | GGGAC | 1 cut(s) | 322 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 177, 284 |
| BsmFI | GGGAC | 1 cut(s) | 322 |
| BsnI | GGCC | 1 cut(s) | 449 |
| Bsp143I | GATC | 4 cut(s) | 34, 103, 181, 457 |
| BspACI | CCGC | 1 cut(s) | 91 |
| BspANI | GGCC | 1 cut(s) | 449 |
| BspCNI | CTCAG | 2 cut(s) | 131, 498 |
| BspFNI | CGCG | 2 cut(s) | 108, 229 |
| BspLI | GGNNCC | 4 cut(s) | 61, 168, 236, 459 |
| BspMI | ACCTGC | 1 cut(s) | 87 |
| BspPI | GGATC | 4 cut(s) | 111, 189, 452, 465 |
| BspT107I | GGYRCC | 1 cut(s) | 234 |
| BsrFI | RCCGGY | 1 cut(s) | 237 |
| BssAI | RCCGGY | 1 cut(s) | 237 |
| BssECI | CCNNGG | 1 cut(s) | 464 |
| BssMI | GATC | 4 cut(s) | 34, 103, 181, 457 |
| BssNI | GRCGYC | 1 cut(s) | 241 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 1 cut(s) | 464 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 2 cut(s) | 367, 385 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 145 |
| BstACI | GRCGYC | 1 cut(s) | 241 |
| BstDEI | CTNAG | 2 cut(s) | 118, 506 |
| BstF5I | GGATG | 3 cut(s) | 22, 186, 328 |
| BstFNI | CGCG | 2 cut(s) | 108, 229 |
| BstHHI | GCGC | 1 cut(s) | 110 |
| BstKTI | GATC | 4 cut(s) | 37, 106, 184, 460 |
| BstMBI | GATC | 4 cut(s) | 34, 103, 181, 457 |
| BstNI | CCWGG | 2 cut(s) | 367, 385 |
| BstSCI | CCNGG | 2 cut(s) | 365, 383 |
| BstUI | CGCG | 2 cut(s) | 108, 229 |
| BstV1I | GCAGC | 1 cut(s) | 400 |
| BstX2I | RGATCY | 1 cut(s) | 457 |
| BstYI | RGATCY | 1 cut(s) | 457 |
| BsuRI | GGCC | 1 cut(s) | 449 |
| BtsCI | GGATG | 3 cut(s) | 22, 186, 328 |
| BtsIMutI | CAGTG | 1 cut(s) | 150 |
| BveI | ACCTGC | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 110 |
| Cfr10I | RCCGGY | 1 cut(s) | 237 |
| CseI | GACGC | 2 cut(s) | 218, 230 |
| CsiI | ACCWGGT | 1 cut(s) | 365 |
| Csp6I | GTAC | 1 cut(s) | 235 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 263, 298 |
| CviAII | CATG | 1 cut(s) | 72 |
| CviJI | RGCY | 7 cut(s) | 116, 122, 149, 167, 327, 449, 498 |
| CviKI_1 | RGCY | 7 cut(s) | 116, 122, 149, 167, 327, 449, 498 |
| CviQI | GTAC | 1 cut(s) | 235 |
| DdeI | CTNAG | 2 cut(s) | 118, 506 |
| DpnI | GATC | 4 cut(s) | 36, 105, 183, 459 |
| DpnII | GATC | 4 cut(s) | 34, 103, 181, 457 |
| DraI | TTTAAA | 1 cut(s) | 378 |
| Eco130I | CCWWGG | 1 cut(s) | 464 |
| Eco147I | AGGCCT | 1 cut(s) | 449 |
| Eco32I | GATATC | 1 cut(s) | 136 |
| Eco57I | CTGAAG | 2 cut(s) | 416, 428 |
| EcoRI | GAATTC | 1 cut(s) | 257 |
| EcoRII | CCWGG | 2 cut(s) | 365, 383 |
| EcoRV | GATATC | 1 cut(s) | 136 |
| EcoT14I | CCWWGG | 1 cut(s) | 464 |
| ErhI | CCWWGG | 1 cut(s) | 464 |
| FaeI | CATG | 1 cut(s) | 75 |
| FaiI | YATR | 5 cut(s) | 73, 177, 335, 402, 495 |
| FaqI | GGGAC | 1 cut(s) | 322 |
| FatI | CATG | 1 cut(s) | 71 |
| FblI | GTMKAC | 1 cut(s) | 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 389 |
| FokI | GGATG | 3 cut(s) | 29, 173, 315 |
| Fsp4HI | GCNGC | 1 cut(s) | 389 |
| FspBI | CTAG | 2 cut(s) | 150, 465 |
| GlaI | GCGC | 1 cut(s) | 109 |
| GluI | GCNGC | 1 cut(s) | 389 |
| HaeIII | GGCC | 1 cut(s) | 449 |
| HapII | CCGG | 1 cut(s) | 238 |
| HgaI | GACGC | 2 cut(s) | 218, 230 |
| HhaI | GCGC | 1 cut(s) | 110 |
| Hin1I | GRCGYC | 1 cut(s) | 241 |
| Hin1II | CATG | 1 cut(s) | 75 |
| Hin6I | GCGC | 1 cut(s) | 108 |
| HinP1I | GCGC | 1 cut(s) | 108 |
| HincII | GTYRAC | 1 cut(s) | 440 |
| HindII | GTYRAC | 1 cut(s) | 440 |
| HinfI | GANTC | 2 cut(s) | 317, 490 |
| HpaII | CCGG | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 1 cut(s) | 440 |
| Hpy188I | TCNGA | 4 cut(s) | 316, 360, 507, 514 |
| Hpy8I | GTNNAC | 1 cut(s) | 440 |
| Hpy99I | CGWCG | 1 cut(s) | 234 |
| HpyAV | CCTTC | 1 cut(s) | 402 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 145 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 96 |
| HpyF3I | CTNAG | 2 cut(s) | 118, 506 |
| Hsp92I | GRCGYC | 1 cut(s) | 241 |
| Hsp92II | CATG | 1 cut(s) | 75 |
| HspAI | GCGC | 1 cut(s) | 108 |
| KpnI | GGTACC | 1 cut(s) | 238 |
| Kzo9I | GATC | 4 cut(s) | 34, 103, 181, 457 |
| LmnI | GCTCC | 1 cut(s) | 172 |
| Lsp1109I | GCAGC | 1 cut(s) | 400 |
| LweI | GCATC | 2 cut(s) | 7, 466 |
| MabI | ACCWGGT | 1 cut(s) | 365 |
| MaeI | CTAG | 2 cut(s) | 150, 465 |
| MaeIII | GTNAC | 2 cut(s) | 343, 394 |
| MalI | GATC | 4 cut(s) | 36, 105, 183, 459 |
| MboI | GATC | 4 cut(s) | 34, 103, 181, 457 |
| MboII | GAAGA | 2 cut(s) | 130, 312 |
| MflI | RGATCY | 1 cut(s) | 457 |
| MluCI | AATT | 3 cut(s) | 257, 354, 420 |
| MluI | ACGCGT | 1 cut(s) | 227 |
| MlyI | GAGTC | 1 cut(s) | 499 |
| MmeI | TCCRAC | 3 cut(s) | 81, 245, 287 |
| MnlI | CCTC | 5 cut(s) | 73, 127, 133, 471, 501 |
| MseI | TTAA | 2 cut(s) | 249, 377 |
| MspI | CCGG | 1 cut(s) | 238 |
| MspR9I | CCNGG | 2 cut(s) | 367, 385 |
| MvaI | CCWGG | 2 cut(s) | 367, 385 |
| MvnI | CGCG | 2 cut(s) | 108, 229 |
| NdeII | GATC | 4 cut(s) | 34, 103, 181, 457 |
| NlaIII | CATG | 1 cut(s) | 75 |
| NlaIV | GGNNCC | 4 cut(s) | 61, 168, 236, 459 |
| NmuCI | GTSAC | 1 cut(s) | 343 |
| PceI | AGGCCT | 1 cut(s) | 449 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 317 |
| PkrI | GCNGC | 1 cut(s) | 390 |
| PleI | GAGTC | 1 cut(s) | 498 |
| PpsI | GAGTC | 1 cut(s) | 498 |
| Psp6I | CCWGG | 2 cut(s) | 365, 383 |
| PspGI | CCWGG | 2 cut(s) | 365, 383 |
| PspN4I | GGNNCC | 4 cut(s) | 61, 168, 236, 459 |
| PsuI | RGATCY | 1 cut(s) | 457 |
| RsaI | GTAC | 1 cut(s) | 236 |
| RsaNI | GTAC | 1 cut(s) | 235 |
| SalI | GTCGAC | 1 cut(s) | 438 |
| SaqAI | TTAA | 2 cut(s) | 249, 377 |
| SatI | GCNGC | 1 cut(s) | 389 |
| Sau3AI | GATC | 4 cut(s) | 34, 103, 181, 457 |
| SchI | GAGTC | 1 cut(s) | 499 |
| ScrFI | CCNGG | 2 cut(s) | 367, 385 |
| SetI | ASST | 7 cut(s) | 65, 101, 307, 371, 401, 470, 512 |
| SexAI | ACCWGGT | 1 cut(s) | 365 |
| SfaNI | GCATC | 2 cut(s) | 7, 466 |
| Sse9I | AATT | 3 cut(s) | 257, 354, 420 |
| SseBI | AGGCCT | 1 cut(s) | 449 |
| SsiI | CCGC | 1 cut(s) | 91 |
| SspMI | CTAG | 2 cut(s) | 150, 465 |
| StuI | AGGCCT | 1 cut(s) | 449 |
| StyD4I | CCNGG | 2 cut(s) | 365, 383 |
| StyI | CCWWGG | 1 cut(s) | 464 |
| TaaI | ACNGT | 2 cut(s) | 32, 145 |
| TaqI | TCGA | 1 cut(s) | 439 |
| TasI | AATT | 3 cut(s) | 257, 354, 420 |
| TfiI | GAWTC | 1 cut(s) | 317 |
| Tru1I | TTAA | 2 cut(s) | 249, 377 |
| Tru9I | TTAA | 2 cut(s) | 249, 377 |
| TscAI | CASTG | 1 cut(s) | 150 |
| TseFI | GTSAC | 1 cut(s) | 343 |
| TseI | GCWGC | 1 cut(s) | 388 |
| Tsp45I | GTSAC | 1 cut(s) | 343 |
| TspDTI | ATGAA | 1 cut(s) | 164 |
| TspRI | CASTG | 1 cut(s) | 150 |
| XapI | RAATTY | 2 cut(s) | 257, 354 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 281 |
| XmaJI | CCTAGG | 1 cut(s) | 464 |
| XmiI | GTMKAC | 1 cut(s) | 439 |
| XspI | CTAG | 2 cut(s) | 150, 465 |