Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SWIM | PF04434 | 73 - 100 | 6.7e-06 | SWIM zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 663 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AccII | CGCG | 1 cut(s) | 663 |
| AciI | CCGC | 4 cut(s) | 424, 471, 663, 750 |
| AcsI | RAATTY | 3 cut(s) | 203, 529, 948 |
| AcuI | CTGAAG | 2 cut(s) | 198, 570 |
| AcvI | CACGTG | 1 cut(s) | 626 |
| AfaI | GTAC | 2 cut(s) | 877, 898 |
| AgsI | TTSAA | 5 cut(s) | 283, 559, 581, 695, 954 |
| AhlI | ACTAGT | 1 cut(s) | 872 |
| AjnI | CCWGG | 2 cut(s) | 771, 942 |
| AluBI | AGCT | 4 cut(s) | 77, 353, 599, 644 |
| AluI | AGCT | 4 cut(s) | 77, 353, 599, 644 |
| Ama87I | CYCGRG | 1 cut(s) | 186 |
| ApoI | RAATTY | 3 cut(s) | 203, 529, 948 |
| AspS9I | GGNCC | 1 cut(s) | 383 |
| AsuHPI | GGTGA | 2 cut(s) | 125, 620 |
| AvaI | CYCGRG | 1 cut(s) | 186 |
| AvaII | GGWCC | 1 cut(s) | 383 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 867, 888, 900, 921 |
| BbrPI | CACGTG | 1 cut(s) | 626 |
| BccI | CCATC | 2 cut(s) | 333, 521 |
| BceAI | ACGGC | 1 cut(s) | 255 |
| BciT130I | CCWGG | 2 cut(s) | 773, 944 |
| BcuI | ACTAGT | 1 cut(s) | 872 |
| BfaI | CTAG | 1 cut(s) | 873 |
| BfmI | CTRYAG | 1 cut(s) | 735 |
| BisI | GCNGC | 2 cut(s) | 471, 750 |
| BlsI | GCNGC | 2 cut(s) | 472, 751 |
| Bme1390I | CCNGG | 2 cut(s) | 773, 944 |
| Bme18I | GGWCC | 1 cut(s) | 383 |
| BmeT110I | CYCGRG | 1 cut(s) | 186 |
| BmgT120I | GGNCC | 1 cut(s) | 383 |
| BmrFI | CCNGG | 2 cut(s) | 773, 944 |
| BmsI | GCATC | 4 cut(s) | 199, 375, 470, 556 |
| BpmI | CTGGAG | 1 cut(s) | 926 |
| Bpu10I | CCTNAGC | 1 cut(s) | 354 |
| BpuEI | CTTGAG | 2 cut(s) | 389, 837 |
| Bsa29I | ATCGAT | 1 cut(s) | 337 |
| BsaAI | YACGTR | 1 cut(s) | 626 |
| BseBI | CCWGG | 2 cut(s) | 773, 944 |
| BseCI | ATCGAT | 1 cut(s) | 337 |
| BseGI | GGATG | 1 cut(s) | 461 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| Bsh1236I | CGCG | 1 cut(s) | 663 |
| Bsh1285I | CGRYCG | 1 cut(s) | 667 |
| BshVI | ATCGAT | 1 cut(s) | 337 |
| BsiEI | CGRYCG | 1 cut(s) | 667 |
| BsiHKCI | CYCGRG | 1 cut(s) | 186 |
| BsoBI | CYCGRG | 1 cut(s) | 186 |
| BspACI | CCGC | 4 cut(s) | 424, 471, 663, 750 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspDI | ATCGAT | 1 cut(s) | 337 |
| BspFNI | CGCG | 1 cut(s) | 663 |
| BssNAI | GTATAC | 1 cut(s) | 66 |
| Bst1107I | GTATAC | 1 cut(s) | 66 |
| Bst2UI | CCWGG | 2 cut(s) | 773, 944 |
| Bst4CI | ACNGT | 1 cut(s) | 649 |
| Bst6I | CTCTTC | 1 cut(s) | 92 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 467 |
| BstBAI | YACGTR | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 1 cut(s) | 803 |
| BstDEI | CTNAG | 3 cut(s) | 144, 354, 866 |
| BstF5I | GGATG | 1 cut(s) | 461 |
| BstFNI | CGCG | 1 cut(s) | 663 |
| BstMCI | CGRYCG | 1 cut(s) | 667 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 467, 746 |
| BstNI | CCWGG | 2 cut(s) | 773, 944 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| BstSCI | CCNGG | 2 cut(s) | 771, 942 |
| BstSFI | CTRYAG | 1 cut(s) | 735 |
| BstUI | CGCG | 1 cut(s) | 663 |
| BstZ17I | GTATAC | 1 cut(s) | 66 |
| Bsu15I | ATCGAT | 1 cut(s) | 337 |
| BsuTUI | ATCGAT | 1 cut(s) | 337 |
| BtsCI | GGATG | 1 cut(s) | 461 |
| Cac8I | GCNNGC | 1 cut(s) | 803 |
| Cfr13I | GGNCC | 1 cut(s) | 383 |
| ClaI | ATCGAT | 1 cut(s) | 337 |
| Csp6I | GTAC | 2 cut(s) | 876, 897 |
| CviAII | CATG | 7 cut(s) | 50, 241, 275, 380, 479, 570, 671 |
| CviJI | RGCY | 7 cut(s) | 77, 353, 432, 599, 644, 713, 749 |
| CviKI_1 | RGCY | 7 cut(s) | 77, 353, 432, 599, 644, 713, 749 |
| CviQI | GTAC | 2 cut(s) | 876, 897 |
| DdeI | CTNAG | 3 cut(s) | 144, 354, 866 |
| DraI | TTTAAA | 2 cut(s) | 682, 721 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 663 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 663 |
| Eam1104I | CTCTTC | 1 cut(s) | 92 |
| EarI | CTCTTC | 1 cut(s) | 92 |
| Eco47I | GGWCC | 1 cut(s) | 383 |
| Eco57I | CTGAAG | 2 cut(s) | 198, 570 |
| Eco72I | CACGTG | 1 cut(s) | 626 |
| Eco88I | CYCGRG | 1 cut(s) | 186 |
| EcoRII | CCWGG | 2 cut(s) | 771, 942 |
| EcoT22I | ATGCAT | 2 cut(s) | 280, 571 |
| FaeI | CATG | 7 cut(s) | 53, 244, 278, 383, 482, 573, 674 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 355, 387, 675, 707, 892, 924 |
| FatI | CATG | 7 cut(s) | 49, 240, 274, 379, 478, 569, 670 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 2 cut(s) | 471, 750 |
| FokI | GGATG | 1 cut(s) | 448 |
| Fsp4HI | GCNGC | 2 cut(s) | 471, 750 |
| FspBI | CTAG | 1 cut(s) | 873 |
| GluI | GCNGC | 2 cut(s) | 471, 750 |
| GsuI | CTGGAG | 1 cut(s) | 926 |
| Hin1II | CATG | 7 cut(s) | 53, 244, 278, 383, 482, 573, 674 |
| HindIII | AAGCTT | 1 cut(s) | 75 |
| HinfI | GANTC | 4 cut(s) | 84, 312, 776, 857 |
| HphI | GGTGA | 2 cut(s) | 125, 620 |
| Hpy166II | GTNNAC | 1 cut(s) | 66 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 217, 589 |
| Hpy188III | TCNNGA | 3 cut(s) | 188, 692, 854 |
| Hpy8I | GTNNAC | 1 cut(s) | 66 |
| HpyAV | CCTTC | 4 cut(s) | 599, 689, 778, 983 |
| HpyCH4III | ACNGT | 1 cut(s) | 649 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 303, 625 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 467, 746 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 354, 866 |
| HpySE526I | ACGT | 3 cut(s) | 33, 303, 625 |
| Hsp92II | CATG | 7 cut(s) | 53, 244, 278, 383, 482, 573, 674 |
| LmnI | GCTCC | 2 cut(s) | 596, 945 |
| LpnPI | CCDG | 7 cut(s) | 30, 84, 104, 758, 785, 929, 956 |
| LweI | GCATC | 4 cut(s) | 199, 375, 470, 556 |
| MaeI | CTAG | 1 cut(s) | 873 |
| MaeII | ACGT | 3 cut(s) | 33, 303, 625 |
| MaeIII | GTNAC | 2 cut(s) | 791, 904 |
| MboII | GAAGA | 9 cut(s) | 79, 310, 321, 548, 556, 559, 575, 963, 998 |
| MfeI | CAATTG | 1 cut(s) | 796 |
| MluCI | AATT | 9 cut(s) | 203, 250, 445, 529, 576, 703, 796, 948, 967 |
| MlyI | GAGTC | 1 cut(s) | 78 |
| MmeI | TCCRAC | 3 cut(s) | 270, 574, 631 |
| MnlI | CCTC | 5 cut(s) | 22, 49, 52, 327, 475 |
| Mph1103I | ATGCAT | 2 cut(s) | 280, 571 |
| MseI | TTAA | 6 cut(s) | 249, 332, 525, 633, 681, 720 |
| MslI | CAYNNNNRTG | 1 cut(s) | 935 |
| MspR9I | CCNGG | 2 cut(s) | 773, 944 |
| MunI | CAATTG | 1 cut(s) | 796 |
| MvaI | CCWGG | 2 cut(s) | 773, 944 |
| MvnI | CGCG | 1 cut(s) | 663 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 467, 746 |
| NlaIII | CATG | 7 cut(s) | 53, 244, 278, 383, 482, 573, 674 |
| NmuCI | GTSAC | 1 cut(s) | 791 |
| NsiI | ATGCAT | 2 cut(s) | 280, 571 |
| NspI | RCATGY | 1 cut(s) | 53 |
| PaeR7I | CTCGAG | 1 cut(s) | 186 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 448 |
| PfeI | GAWTC | 3 cut(s) | 312, 776, 857 |
| PfoI | TCCNGGA | 2 cut(s) | 771, 942 |
| PkrI | GCNGC | 2 cut(s) | 472, 751 |
| PleI | GAGTC | 1 cut(s) | 78 |
| PmaCI | CACGTG | 1 cut(s) | 626 |
| PmlI | CACGTG | 1 cut(s) | 626 |
| PpsI | GAGTC | 1 cut(s) | 78 |
| Ppu21I | YACGTR | 1 cut(s) | 626 |
| Psp6I | CCWGG | 2 cut(s) | 771, 942 |
| PspCI | CACGTG | 1 cut(s) | 626 |
| PspGI | CCWGG | 2 cut(s) | 771, 942 |
| PspPI | GGNCC | 1 cut(s) | 383 |
| RsaI | GTAC | 2 cut(s) | 877, 898 |
| RsaNI | GTAC | 2 cut(s) | 876, 897 |
| RseI | CAYNNNNRTG | 1 cut(s) | 935 |
| SaqAI | TTAA | 6 cut(s) | 249, 332, 525, 633, 681, 720 |
| SatI | GCNGC | 2 cut(s) | 471, 750 |
| Sau96I | GGNCC | 1 cut(s) | 383 |
| SchI | GAGTC | 1 cut(s) | 78 |
| ScrFI | CCNGG | 2 cut(s) | 773, 944 |
| SfaNI | GCATC | 4 cut(s) | 199, 375, 470, 556 |
| SfcI | CTRYAG | 1 cut(s) | 735 |
| Sfr274I | CTCGAG | 1 cut(s) | 186 |
| SinI | GGWCC | 1 cut(s) | 383 |
| SlaI | CTCGAG | 1 cut(s) | 186 |
| SmiI | ATTTAAAT | 1 cut(s) | 721 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 935 |
| SmlI | CTYRAG | 3 cut(s) | 186, 404, 852 |
| SmoI | CTYRAG | 3 cut(s) | 186, 404, 852 |
| SpeI | ACTAGT | 1 cut(s) | 872 |
| Sse9I | AATT | 9 cut(s) | 203, 250, 445, 529, 576, 703, 796, 948, 967 |
| SsiI | CCGC | 4 cut(s) | 424, 471, 663, 750 |
| SspMI | CTAG | 1 cut(s) | 873 |
| StyD4I | CCNGG | 2 cut(s) | 771, 942 |
| SwaI | ATTTAAAT | 1 cut(s) | 721 |
| TaaI | ACNGT | 1 cut(s) | 649 |
| TaiI | ACGT | 3 cut(s) | 36, 306, 628 |
| TaqI | TCGA | 4 cut(s) | 187, 337, 413, 516 |
| TasI | AATT | 9 cut(s) | 203, 250, 445, 529, 576, 703, 796, 948, 967 |
| TauI | GCSGC | 2 cut(s) | 473, 752 |
| TfiI | GAWTC | 3 cut(s) | 312, 776, 857 |
| Tru1I | TTAA | 6 cut(s) | 249, 332, 525, 633, 681, 720 |
| Tru9I | TTAA | 6 cut(s) | 249, 332, 525, 633, 681, 720 |
| TseFI | GTSAC | 1 cut(s) | 791 |
| Tsp45I | GTSAC | 1 cut(s) | 791 |
| TspDTI | ATGAA | 8 cut(s) | 164, 171, 257, 411, 519, 834, 840, 999 |
| VpaK11BI | GGWCC | 1 cut(s) | 383 |
| XapI | RAATTY | 3 cut(s) | 203, 529, 948 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XhoI | CTCGAG | 1 cut(s) | 186 |
| XmiI | GTMKAC | 1 cut(s) | 65 |
| XspI | CTAG | 1 cut(s) | 873 |
| Zsp2I | ATGCAT | 2 cut(s) | 280, 571 |