FvH4_6g33201

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000045
Physical Location & Seq
Reverse (-)
26281949 .. 26293020
11072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33201.t1

Sequence Viewer

Length: 1812 bp
ATGCATGACAGTGTCTATATGGATAATCTTTGTTTGGAATTGGGGATGCTTAATTGTGAGGCTGTGTTCTCTGAAGGTCAATCCGGGGGATTGGCGCTGTTCTGGAAGGATGAGATCCAGGTGACTTTCTTATCTAAATCAAAGCATCATATTGGTGTGGAGATTCTTGAGAGTGACGAATTAGGAGTGCGTTGGAGGCTAACTGGCTTTTATGGACATCCTGTAACAAGCGAACGCCATAGAACTTGGGATCTTCTGAGGGAGCTATGTGGTCATTCCTCGTTACCCTGGGTGGTTTTTGGAGATTTTAATGAACTCTTGCTGAACTTTGATAAGGAGGGAGGAGAGATCCGTCGTGAAAGCCAGATGCAGTGCTTTAGGGATGCGCTCAGTTATTGTGAGTTGGGAGATTTAGAGTTCTTTGGTCCAAAGTTTACTTGGAAGGGTCCTGGAATGCGTAGTTGTCTTGATCGTGGAGTTGGGTCGAAGGATTGGATTGCATTGTTTCCGACTTCTAGGGTTTGGAACCTTCTTCCAATTCATGGCGACCATGTTCCTATTTTGTTAGGAGTCCTGAAACAGCCGGGAAGACAGCCTGTTCAAGGTGCTAGCCGTTTTCGGTTTGATGCTCATTGGAGAGCTACCTTTGGTAATAGAGGTCGTGAAATTGAAGCTTTGAGGGGTAGACTCCAGGCTTTACTATCTCTTCCTCTAACAGATGAGTTTCAGTTGGAGCAAACGATACTCTCGGGGAAGCTCGATTCTTTGTTAAGTGAGGAGCATGCTTATTGGAAACAGCAGGCGAAAGTGAATTGGCTTAAGGATGGTGATAGGAATACTAGGTACTTTCACCGTAAGGCCTCTAATCGGAAGAGAAAAAACAGGTTACAAGGTCTGTTTGATGTCAATGGGGTTTGGCAAGATTCTGATGTAGGTATGGAAAATGTGGTGGTGAGCTACTTCACACAAATGTTCCAAGTTGCTCCGGTTGATTATGATCATATGCGATCGGACTATGTGTCCCCGGTATCATGGGATCCCTCACGAAACATCATCGTATGGCCCAAACTATTTTCCTTTATAAGGTTGAAGTCGCTTAAGTCTTTCCCTCCCTCCCTCTTCGAAAATTTCGGTGCTCTGTTTCCTCGCTGGGAATCCAAGATGGCCGAAATCCAAGACTTGGAGTGTAGCTTCTACCTTGAATCTTTTAGGGTCAAGGATATCGTCTTGGAGTTTTGCCAGGCACCCCATCGGTACCACTTCGACTGTCTGCACAACGGCTACGCTCCCGTAGCAATGAAAAATACGGTGGCTGGGAATCGCATCAGGTGCCCTCTCTGCAGTCAAAGTCGGCCACTGAGCGATTCCGTTACGTTGTTCGTTCTTGAAGATAGATTGGTGCCGGCGACGGAGTTCCCCGACTGGGAATGGTGGCTTCCGACGATGCCGCCCACCCCACCAATGCTTCCTTACAATCATGTTAATCTTGAATTTGAGGCCAACCTCATTCCGGCAGAGGTGATTGACTTTGGCTTAGAGCTTCTGTTCGGAACCAAAGAAGAAGAGGAAGAGCCGCTGCCGGAGGCGCCGACTGTGGAGGAGAATGGTGCCGCGGCGGAGGGGGATGGTCTCATTGGTCTCTATCGGGATCCTGAATTTCTAGATCCGATAGATATTTTCTTGGAACCTGGCGTGGTGGGAGTGATCCCGAACGAGTTTCCACCGGCTTATTCTTTAAATGATGAGCAAGAGTCCGATGTGGATGATCAATCGGACGTTGAAGACTCCGATGAGTCTGTGCAGCACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

604

Amino Acids

69.12

Weight (kDa)

4.88

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 25 - 163 8.1e-08 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
Acc65I GGTACC 1 cut(s) 1254
AccB1I GGYRCC 6 cut(s) 1243, 1254, 1329, 1399, 1585, 1607
AccB7I CCANNNNNTGG 2 cut(s) 542, 1180
AccI GTMKAC 1 cut(s) 685
AccII CGCG 1 cut(s) 1613
AciI CCGC 5 cut(s) 1448, 1574, 1611, 1613, 1616
AclWI GGATC 9 cut(s) 109, 258, 343, 1031, 1044, 1643, 1656, 1658, 1699
AcoI YGGCCR 2 cut(s) 1164, 1352
AcsI RAATTY 3 cut(s) 1126, 1490, 1655
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 1586
AfaI GTAC 2 cut(s) 845, 1256
AfiI CCNNNNNNNGG 7 cut(s) 542, 602, 867, 1083, 1180, 1423, 1510
AflII CTTAAG 2 cut(s) 818, 1097
AgsI TTSAA 7 cut(s) 602, 671, 1090, 1202, 1388, 1490, 1781
AhdI GACNNNNNGTC 1 cut(s) 1018
AjnI CCWGG 6 cut(s) 117, 287, 448, 690, 1239, 1687
AluBI AGCT 7 cut(s) 265, 641, 674, 757, 957, 1191, 1540
AluI AGCT 7 cut(s) 265, 641, 674, 757, 957, 1191, 1540
Alw21I GWGCWC 1 cut(s) 1138
Alw26I GTCTC 2 cut(s) 1634, 1643
AlwI GGATC 9 cut(s) 109, 258, 343, 1031, 1044, 1643, 1656, 1658, 1699
Ama87I CYCGRG 1 cut(s) 748
AoxI GGCC 5 cut(s) 858, 1061, 1164, 1352, 1497
ApeKI GCWGC 2 cut(s) 1576, 1801
ApoI RAATTY 3 cut(s) 1126, 1490, 1655
Asp718I GGTACC 1 cut(s) 1254
AspLEI GCGC 3 cut(s) 97, 388, 1588
AspS9I GGNCC 3 cut(s) 425, 446, 1062
AsuC2I CCSGG 3 cut(s) 85, 585, 1025
AsuHPI GGTGA 5 cut(s) 133, 839, 842, 964, 1531
AsuII TTCGAA 1 cut(s) 1122
AsuNHI GCTAGC 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 748
AvaII GGWCC 2 cut(s) 425, 446
BaeGI GKGCMC 1 cut(s) 1334
BamHI GGATCC 2 cut(s) 1036, 1648
BanI GGYRCC 6 cut(s) 1243, 1254, 1329, 1399, 1585, 1607
BbsI GAAGAC 2 cut(s) 595, 1788
Bbv12I GWGCWC 1 cut(s) 1138
BbvI GCAGC 1 cut(s) 1563
BccI CCATC 4 cut(s) 818, 1156, 1257, 1619
BceAI ACGGC 2 cut(s) 597, 1294
BciT130I CCWGG 6 cut(s) 119, 289, 450, 692, 1241, 1689
BclI TGATCA 2 cut(s) 997, 1765
BcnI CCSGG 3 cut(s) 85, 585, 1025
BcoDI GTCTC 2 cut(s) 1634, 1643
BfaI CTAG 4 cut(s) 516, 609, 840, 1661
BfmI CTRYAG 1 cut(s) 1339
BfoI RGCGCY 2 cut(s) 98, 1589
BfrI CTTAAG 2 cut(s) 818, 1097
BisI GCNGC 6 cut(s) 1448, 1574, 1577, 1611, 1614, 1802
BlsI GCNGC 6 cut(s) 1449, 1575, 1578, 1612, 1615, 1803
Bme1390I CCNGG 9 cut(s) 85, 119, 289, 450, 585, 692, 1025, 1241, 1689
Bme18I GGWCC 2 cut(s) 425, 446
BmeRI GACNNNNNGTC 1 cut(s) 1018
BmeT110I CYCGRG 1 cut(s) 748
BmgT120I GGNCC 3 cut(s) 425, 446, 1062
BmrFI CCNGG 9 cut(s) 85, 119, 289, 450, 585, 692, 1025, 1241, 1689
BmrI ACTGGG 1 cut(s) 1432
BmsI GCATC 7 cut(s) 36, 154, 357, 373, 616, 1332, 1434
BmtI GCTAGC 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 1432
BpiI GAAGAC 2 cut(s) 595, 1788
BpmI CTGGAG 1 cut(s) 674
Bpu14I TTCGAA 1 cut(s) 1122
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 3 cut(s) 85, 585, 1025
BsaBI GATNNNNATC 1 cut(s) 996
BsaHI GRCGYC 1 cut(s) 1586
BsaI GGTCTC 2 cut(s) 1634, 1643
BsaJI CCNNGG 5 cut(s) 84, 287, 288, 1023, 1611
BsaWI WCCGGW 1 cut(s) 985
Bsc4I CCNNNNNNNGG 7 cut(s) 542, 602, 867, 1083, 1180, 1423, 1510
Bse118I RCCGGY 2 cut(s) 1402, 1723
Bse1I ACTGG 2 cut(s) 208, 1427
Bse3DI GCAATG 1 cut(s) 1302
Bse8I GATNNNNATC 1 cut(s) 996
BseBI CCWGG 6 cut(s) 119, 289, 450, 692, 1241, 1689
BseDI CCNNGG 5 cut(s) 84, 287, 288, 1023, 1611
BseGI GGATG 7 cut(s) 51, 115, 217, 388, 829, 1630, 1768
BseJI GATNNNNATC 1 cut(s) 996
BseLI CCNNNNNNNGG 7 cut(s) 542, 602, 867, 1083, 1180, 1423, 1510
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 3 cut(s) 248, 403, 1349
BseNI ACTGG 2 cut(s) 208, 1427
BseRI GAGGAG 3 cut(s) 357, 791, 1613
BseSI GKGCMC 1 cut(s) 1334
BseXI GCAGC 1 cut(s) 1563
BseYI CCCAGC 2 cut(s) 1149, 1313
BsgI GTGCAG 1 cut(s) 1256
Bsh1236I CGCG 1 cut(s) 1613
Bsh1285I CGRYCG 1 cut(s) 1010
BshFI GGCC 5 cut(s) 860, 1063, 1166, 1354, 1499
BshNI GGYRCC 6 cut(s) 1243, 1254, 1329, 1399, 1585, 1607
BsiEI CGRYCG 1 cut(s) 1010
BsiHKAI GWGCWC 1 cut(s) 1138
BsiHKCI CYCGRG 1 cut(s) 748
BsiSI CCGG 8 cut(s) 84, 584, 986, 1025, 1403, 1511, 1580, 1724
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 7 cut(s) 542, 602, 867, 1083, 1180, 1423, 1510
BsmAI GTCTC 2 cut(s) 1634, 1643
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 459
BsnI GGCC 5 cut(s) 860, 1063, 1166, 1354, 1499
Bso31I GGTCTC 2 cut(s) 1634, 1643
BsoBI CYCGRG 1 cut(s) 748
Bsp119I TTCGAA 1 cut(s) 1122
Bsp1286I GDGCHC 2 cut(s) 1138, 1334
BspACI CCGC 5 cut(s) 1448, 1574, 1611, 1613, 1616
BspANI GGCC 5 cut(s) 860, 1063, 1166, 1354, 1499
BspCNI CTCAG 3 cut(s) 249, 402, 1350
BspFNI CGCG 1 cut(s) 1613
BspMAI CTGCAG 1 cut(s) 1343
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 9 cut(s) 109, 258, 343, 1031, 1044, 1643, 1656, 1658, 1699
BspQI GCTCTTC 1 cut(s) 1563
BspT104I TTCGAA 1 cut(s) 1122
BspT107I GGYRCC 6 cut(s) 1243, 1254, 1329, 1399, 1585, 1607
BspTI CTTAAG 2 cut(s) 818, 1097
BspTNI GGTCTC 2 cut(s) 1634, 1643
BsrDI GCAATG 1 cut(s) 1302
BsrFI RCCGGY 2 cut(s) 1402, 1723
BsrI ACTGG 2 cut(s) 208, 1427
BssAI RCCGGY 2 cut(s) 1402, 1723
BssECI CCNNGG 5 cut(s) 84, 287, 288, 1023, 1611
BssNI GRCGYC 1 cut(s) 1586
Bst2UI CCWGG 6 cut(s) 119, 289, 450, 692, 1241, 1689
Bst4CI ACNGT 6 cut(s) 11, 854, 1268, 1309, 1594, 1808
Bst6I CTCTTC 5 cut(s) 711, 866, 1124, 1557, 1563
BstACI GRCGYC 1 cut(s) 1586
BstAFI CTTAAG 2 cut(s) 818, 1097
BstAPI GCANNNNNTGC 1 cut(s) 1329
BstBI TTCGAA 1 cut(s) 1122
BstC8I GCNNGC 4 cut(s) 610, 783, 801, 1404
BstDEI CTNAG 4 cut(s) 257, 389, 1358, 1534
BstDSI CCRYGG 1 cut(s) 1611
BstENI CCTNNNNNAGG 2 cut(s) 600, 1081
BstF5I GGATG 7 cut(s) 51, 115, 217, 388, 829, 1630, 1768
BstFNI CGCG 1 cut(s) 1613
BstH2I RGCGCY 2 cut(s) 98, 1589
BstHHI GCGC 3 cut(s) 97, 388, 1588
BstMAI GTCTC 2 cut(s) 1634, 1643
BstMCI CGRYCG 1 cut(s) 1010
BstMWI GCNNNNNNNGC 5 cut(s) 196, 1292, 1329, 1338, 1585
BstNI CCWGG 6 cut(s) 119, 289, 450, 692, 1241, 1689
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 9 cut(s) 83, 117, 287, 448, 583, 690, 1023, 1239, 1687
BstSFI CTRYAG 1 cut(s) 1339
BstSLI GKGCMC 1 cut(s) 1334
BstUI CGCG 1 cut(s) 1613
BstV1I GCAGC 1 cut(s) 1563
BstV2I GAAGAC 2 cut(s) 595, 1788
BstX2I RGATCY 6 cut(s) 114, 250, 348, 1036, 1648, 1663
BstYI RGATCY 6 cut(s) 114, 250, 348, 1036, 1648, 1663
BsuRI GGCC 5 cut(s) 860, 1063, 1166, 1354, 1499
BtgI CCRYGG 1 cut(s) 1611
BtsCI GGATG 7 cut(s) 51, 115, 217, 388, 829, 1630, 1768
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 3 cut(s) 16, 377, 1355
Cac8I GCNNGC 4 cut(s) 610, 783, 801, 1404
CfoI GCGC 3 cut(s) 97, 388, 1588
Cfr10I RCCGGY 2 cut(s) 1402, 1723
Cfr13I GGNCC 3 cut(s) 425, 446, 1062
Cfr42I CCGCGG 1 cut(s) 1614
Csp6I GTAC 2 cut(s) 844, 1255
CviAII CATG 6 cut(s) 5, 542, 551, 782, 1032, 1478
CviQI GTAC 2 cut(s) 844, 1255
DdeI CTNAG 4 cut(s) 257, 389, 1358, 1534
DinI GGCGCC 1 cut(s) 1587
DraI TTTAAA 1 cut(s) 1737
DriI GACNNNNNGTC 1 cut(s) 1018
EaeI YGGCCR 2 cut(s) 1164, 1352
Eam1104I CTCTTC 5 cut(s) 711, 866, 1124, 1557, 1563
Eam1105I GACNNNNNGTC 1 cut(s) 1018
EarI CTCTTC 5 cut(s) 711, 866, 1124, 1557, 1563
EciI GGCGGA 1 cut(s) 1631
Eco147I AGGCCT 1 cut(s) 860
Eco31I GGTCTC 2 cut(s) 1634, 1643
Eco32I GATATC 1 cut(s) 1222
Eco47I GGWCC 2 cut(s) 425, 446
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 748
EcoNI CCTNNNNNAGG 2 cut(s) 600, 1081
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 6 cut(s) 117, 287, 448, 690, 1239, 1687
EcoRV GATATC 1 cut(s) 1222
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 1587
EheI GGCGCC 1 cut(s) 1587
FaeI CATG 6 cut(s) 8, 545, 554, 785, 1035, 1481
FaqI GGGAC 1 cut(s) 1006
FatI CATG 6 cut(s) 4, 541, 550, 781, 1031, 1477
FauNDI CATATG 1 cut(s) 1002
FbaI TGATCA 2 cut(s) 997, 1765
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 6 cut(s) 1448, 1574, 1577, 1611, 1614, 1802
FokI GGATG 7 cut(s) 58, 122, 204, 395, 836, 1637, 1775
Fsp4HI GCNGC 6 cut(s) 1448, 1574, 1577, 1611, 1614, 1802
FspBI CTAG 4 cut(s) 516, 609, 840, 1661
GlaI GCGC 3 cut(s) 96, 387, 1587
GluI GCNGC 6 cut(s) 1448, 1574, 1577, 1611, 1614, 1802
GsaI CCCAGC 2 cut(s) 1153, 1317
GsuI CTGGAG 1 cut(s) 674
HaeII RGCGCY 2 cut(s) 98, 1589
HaeIII GGCC 5 cut(s) 860, 1063, 1166, 1354, 1499
HapII CCGG 8 cut(s) 84, 584, 986, 1025, 1403, 1511, 1580, 1724
HhaI GCGC 3 cut(s) 97, 388, 1588
Hin1I GRCGYC 1 cut(s) 1586
Hin1II CATG 6 cut(s) 8, 545, 554, 785, 1035, 1481
Hin6I GCGC 3 cut(s) 95, 386, 1586
HinP1I GCGC 3 cut(s) 95, 386, 1586
HindIII AAGCTT 1 cut(s) 672
HpaII CCGG 8 cut(s) 84, 584, 986, 1025, 1403, 1511, 1580, 1724
HphI GGTGA 5 cut(s) 133, 839, 842, 964, 1531
Hpy166II GTNNAC 2 cut(s) 435, 686
Hpy8I GTNNAC 2 cut(s) 435, 686
Hpy99I CGWCG 3 cut(s) 357, 1411, 1444
HpyAV CCTTC 5 cut(s) 68, 100, 436, 481, 539
HpyCH4III ACNGT 6 cut(s) 11, 854, 1268, 1309, 1594, 1808
HpyCH4IV ACGT 2 cut(s) 1373, 1776
HpyCH4V TGCA 6 cut(s) 4, 370, 500, 1273, 1341, 1801
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 1292, 1329, 1338, 1585
HpyF3I CTNAG 4 cut(s) 257, 389, 1358, 1534
HpySE526I ACGT 2 cut(s) 1373, 1776
Hsp92I GRCGYC 1 cut(s) 1586
Hsp92II CATG 6 cut(s) 8, 545, 554, 785, 1035, 1481
HspAI GCGC 3 cut(s) 95, 386, 1586
KasI GGCGCC 1 cut(s) 1585
KpnI GGTACC 1 cut(s) 1258
KroI GCCGGC 1 cut(s) 1402
KroNI GCCGGC 1 cut(s) 1404
Ksp22I TGATCA 2 cut(s) 997, 1765
KspI CCGCGG 1 cut(s) 1614
LguI GCTCTTC 1 cut(s) 1563
LmnI GCTCC 5 cut(s) 262, 733, 778, 988, 1291
Lsp1109I GCAGC 1 cut(s) 1563
LweI GCATC 7 cut(s) 36, 154, 357, 373, 616, 1332, 1434
MaeI CTAG 4 cut(s) 516, 609, 840, 1661
MaeII ACGT 2 cut(s) 1373, 1776
MaeIII GTNAC 6 cut(s) 121, 173, 223, 282, 885, 1369
MflI RGATCY 6 cut(s) 114, 250, 348, 1036, 1648, 1663
MhlI GDGCHC 2 cut(s) 1138, 1334
MluCI AATT 9 cut(s) 38, 52, 179, 537, 666, 811, 1126, 1490, 1655
Mly113I GGCGCC 1 cut(s) 1586
MlyI GAGTC 5 cut(s) 579, 681, 1760, 1778, 1802
MmeI TCCRAC 4 cut(s) 173, 533, 711, 1463
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 1402
MseI TTAA 7 cut(s) 51, 309, 770, 819, 1098, 1482, 1736
MslI CAYNNNNRTG 3 cut(s) 9, 153, 968
MspA1I CMGCKG 2 cut(s) 1576, 1613
MspCI CTTAAG 2 cut(s) 818, 1097
MspI CCGG 8 cut(s) 84, 584, 986, 1025, 1403, 1511, 1580, 1724
MspR9I CCNGG 9 cut(s) 85, 119, 289, 450, 585, 692, 1025, 1241, 1689
Mva1269I GAATGC 1 cut(s) 459
MvaI CCWGG 6 cut(s) 119, 289, 450, 692, 1241, 1689
MvnI CGCG 1 cut(s) 1613
MwoI GCNNNNNNNGC 5 cut(s) 196, 1292, 1329, 1338, 1585
NaeI GCCGGC 1 cut(s) 1404
NarI GGCGCC 1 cut(s) 1586
NciI CCSGG 3 cut(s) 85, 585, 1025
NdeI CATATG 1 cut(s) 1002
NgoMIV GCCGGC 1 cut(s) 1402
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 6 cut(s) 8, 545, 554, 785, 1035, 1481
NmuCI GTSAC 2 cut(s) 121, 173
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 785
NspV TTCGAA 1 cut(s) 1122
PaeI GCATGC 1 cut(s) 785
PasI CCCWGGG 1 cut(s) 288
PceI AGGCCT 1 cut(s) 860
PciSI GCTCTTC 1 cut(s) 1563
PctI GAATGC 1 cut(s) 459
PdiI GCCGGC 1 cut(s) 1404
PfeI GAWTC 7 cut(s) 163, 761, 923, 1154, 1202, 1318, 1364
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 2 cut(s) 542, 1180
PfoI TCCNGGA 1 cut(s) 448
PkrI GCNGC 6 cut(s) 1449, 1575, 1578, 1612, 1615, 1803
Ple19I CGATCG 1 cut(s) 1010
PleI GAGTC 5 cut(s) 578, 681, 1759, 1778, 1801
PluTI GGCGCC 1 cut(s) 1589
PpsI GAGTC 5 cut(s) 578, 681, 1759, 1778, 1801
PpuMI RGGWCCY 1 cut(s) 446
PsiI TTATAA 1 cut(s) 1082
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 6 cut(s) 117, 287, 448, 690, 1239, 1687
PspFI CCCAGC 2 cut(s) 1149, 1313
PspGI CCWGG 6 cut(s) 117, 287, 448, 690, 1239, 1687
PspPI GGNCC 3 cut(s) 425, 446, 1062
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 1 cut(s) 1343
PsuI RGATCY 6 cut(s) 114, 250, 348, 1036, 1648, 1663
PsyI GACNNNGTC 1 cut(s) 11
PvuI CGATCG 1 cut(s) 1010
RsaI GTAC 2 cut(s) 845, 1256
RsaNI GTAC 2 cut(s) 844, 1255
RseI CAYNNNNRTG 3 cut(s) 9, 153, 968
SacII CCGCGG 1 cut(s) 1614
SapI GCTCTTC 1 cut(s) 1563
SaqAI TTAA 7 cut(s) 51, 309, 770, 819, 1098, 1482, 1736
SatI GCNGC 6 cut(s) 1448, 1574, 1577, 1611, 1614, 1802
Sau96I GGNCC 3 cut(s) 425, 446, 1062
SchI GAGTC 5 cut(s) 579, 681, 1760, 1778, 1802
ScrFI CCNGG 9 cut(s) 85, 119, 289, 450, 585, 692, 1025, 1241, 1689
SduI GDGCHC 2 cut(s) 1138, 1334
SfaNI GCATC 7 cut(s) 36, 154, 357, 373, 616, 1332, 1434
SfcI CTRYAG 1 cut(s) 1339
SfoI GGCGCC 1 cut(s) 1587
Sfr303I CCGCGG 1 cut(s) 1614
SfuI TTCGAA 1 cut(s) 1122
SgrBI CCGCGG 1 cut(s) 1614
SinI GGWCC 2 cut(s) 425, 446
SmiMI CAYNNNNRTG 3 cut(s) 9, 153, 968
SmlI CTYRAG 3 cut(s) 167, 818, 1097
SmoI CTYRAG 3 cut(s) 167, 818, 1097
SphI GCATGC 1 cut(s) 785
Sse9I AATT 9 cut(s) 38, 52, 179, 537, 666, 811, 1126, 1490, 1655
SseBI AGGCCT 1 cut(s) 860
SsiI CCGC 5 cut(s) 1448, 1574, 1611, 1613, 1616
SspDI GGCGCC 1 cut(s) 1585
SspMI CTAG 4 cut(s) 516, 609, 840, 1661
StuI AGGCCT 1 cut(s) 860
StyD4I CCNGG 9 cut(s) 83, 117, 287, 448, 583, 690, 1023, 1239, 1687
TaaI ACNGT 6 cut(s) 11, 854, 1268, 1309, 1594, 1808
TaiI ACGT 2 cut(s) 1376, 1779
TaqI TCGA 4 cut(s) 485, 759, 1122, 1263
TasI AATT 9 cut(s) 38, 52, 179, 537, 666, 811, 1126, 1490, 1655
TauI GCSGC 4 cut(s) 1450, 1576, 1613, 1616
TfiI GAWTC 7 cut(s) 163, 761, 923, 1154, 1202, 1318, 1364
Tru1I TTAA 7 cut(s) 51, 309, 770, 819, 1098, 1482, 1736
Tru9I TTAA 7 cut(s) 51, 309, 770, 819, 1098, 1482, 1736
TscAI CASTG 3 cut(s) 16, 377, 1362
TseFI GTSAC 2 cut(s) 121, 173
TseI GCWGC 2 cut(s) 1576, 1801
Tsp45I GTSAC 2 cut(s) 121, 173
TspDTI ATGAA 3 cut(s) 327, 530, 1313
TspGWI ACGGA 3 cut(s) 341, 1357, 1424
TspRI CASTG 3 cut(s) 16, 377, 1362
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 2 cut(s) 542, 1180
Vha464I CTTAAG 2 cut(s) 818, 1097
VpaK11BI GGWCC 2 cut(s) 425, 446
XagI CCTNNNNNAGG 2 cut(s) 600, 1081
XapI RAATTY 3 cut(s) 1126, 1490, 1655
XbaI TCTAGA 1 cut(s) 1660
XceI RCATGY 1 cut(s) 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 4 cut(s) 516, 609, 840, 1661
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.