ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 395, 643 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 290 |
| AccI | GTMKAC | 2 cut(s) | 499, 637 |
| AcoI | YGGCCR | 1 cut(s) | 135 |
| AcuI | CTGAAG | 1 cut(s) | 166 |
| AcyI | GRCGYC | 2 cut(s) | 392, 640 |
| AfeI | AGCGCT | 1 cut(s) | 57 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 290, 578 |
| AgsI | TTSAA | 6 cut(s) | 53, 250, 304, 424, 569, 659 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 348 |
| AjnI | CCWGG | 1 cut(s) | 473 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 224, 256 |
| AluBI | AGCT | 2 cut(s) | 67, 663 |
| AluI | AGCT | 2 cut(s) | 67, 663 |
| Alw21I | GWGCWC | 1 cut(s) | 282 |
| Alw26I | GTCTC | 2 cut(s) | 383, 411 |
| Alw44I | GTGCAC | 1 cut(s) | 278 |
| Aor51HI | AGCGCT | 1 cut(s) | 57 |
| AoxI | GGCC | 3 cut(s) | 135, 174, 681 |
| ApaLI | GTGCAC | 1 cut(s) | 278 |
| ApeKI | GCWGC | 3 cut(s) | 346, 367, 397 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 497, 529 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 573 |
| AspLEI | GCGC | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 2 cut(s) | 593, 682 |
| BaeGI | GKGCMC | 1 cut(s) | 282 |
| BalI | TGGCCA | 1 cut(s) | 137 |
| BbsI | GAAGAC | 1 cut(s) | 172 |
| Bbv12I | GWGCWC | 1 cut(s) | 282 |
| BbvI | GCAGC | 3 cut(s) | 333, 354, 384 |
| BccI | CCATC | 2 cut(s) | 292, 702 |
| BceAI | ACGGC | 1 cut(s) | 161 |
| BciT130I | CCWGG | 1 cut(s) | 475 |
| BcoDI | GTCTC | 2 cut(s) | 383, 411 |
| BfaI | CTAG | 1 cut(s) | 720 |
| BfmI | CTRYAG | 1 cut(s) | 149 |
| BfoI | RGCGCY | 1 cut(s) | 59 |
| BisI | GCNGC | 3 cut(s) | 347, 368, 398 |
| BlsI | GCNGC | 3 cut(s) | 348, 369, 399 |
| Bme1390I | CCNGG | 1 cut(s) | 475 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 348 |
| BmiI | GGNNCC | 1 cut(s) | 242 |
| BmrFI | CCNGG | 1 cut(s) | 475 |
| BmrI | ACTGGG | 2 cut(s) | 327, 389 |
| BmsI | GCATC | 1 cut(s) | 88 |
| BmuI | ACTGGG | 2 cut(s) | 327, 389 |
| BpiI | GAAGAC | 1 cut(s) | 172 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| BsaHI | GRCGYC | 2 cut(s) | 392, 640 |
| BsaJI | CCNNGG | 3 cut(s) | 45, 401, 474 |
| BsaWI | WCCGGW | 1 cut(s) | 243 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 377, 407 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 290, 578 |
| Bse118I | RCCGGY | 1 cut(s) | 440 |
| Bse1I | ACTGG | 4 cut(s) | 311, 322, 384, 507 |
| BseBI | CCWGG | 1 cut(s) | 475 |
| BseDI | CCNNGG | 3 cut(s) | 45, 401, 474 |
| BseGI | GGATG | 4 cut(s) | 82, 238, 274, 713 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 290, 578 |
| BseNI | ACTGG | 4 cut(s) | 311, 322, 384, 507 |
| BseRI | GAGGAG | 1 cut(s) | 401 |
| BseSI | GKGCMC | 1 cut(s) | 282 |
| BseXI | GCAGC | 3 cut(s) | 333, 354, 384 |
| BshFI | GGCC | 3 cut(s) | 137, 176, 683 |
| BsiHKAI | GWGCWC | 1 cut(s) | 282 |
| BsiSI | CCGG | 2 cut(s) | 244, 441 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 290, 578 |
| BsmAI | GTCTC | 2 cut(s) | 383, 411 |
| BsmBI | CGTCTC | 1 cut(s) | 383 |
| BsnI | GGCC | 3 cut(s) | 137, 176, 683 |
| Bsp1286I | GDGCHC | 1 cut(s) | 282 |
| BspANI | GGCC | 3 cut(s) | 137, 176, 683 |
| BspHI | TCATGA | 1 cut(s) | 676 |
| BspLI | GGNNCC | 1 cut(s) | 242 |
| BspMAI | CTGCAG | 1 cut(s) | 153 |
| BsrFI | RCCGGY | 1 cut(s) | 440 |
| BsrI | ACTGG | 4 cut(s) | 311, 322, 384, 507 |
| BssAI | RCCGGY | 1 cut(s) | 440 |
| BssECI | CCNNGG | 3 cut(s) | 45, 401, 474 |
| BssNI | GRCGYC | 2 cut(s) | 392, 640 |
| BssT1I | CCWWGG | 1 cut(s) | 401 |
| Bst2UI | CCWGG | 1 cut(s) | 475 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| BstACI | GRCGYC | 2 cut(s) | 392, 640 |
| BstC8I | GCNNGC | 2 cut(s) | 442, 685 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstDSI | CCRYGG | 1 cut(s) | 45 |
| BstEII | GGTNACC | 1 cut(s) | 581 |
| BstF5I | GGATG | 4 cut(s) | 82, 238, 274, 713 |
| BstH2I | RGCGCY | 1 cut(s) | 59 |
| BstHHI | GCGC | 1 cut(s) | 58 |
| BstMAI | GTCTC | 2 cut(s) | 383, 411 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 64 |
| BstNI | CCWGG | 1 cut(s) | 475 |
| BstPI | GGTNACC | 1 cut(s) | 581 |
| BstSCI | CCNGG | 1 cut(s) | 473 |
| BstSFI | CTRYAG | 1 cut(s) | 149 |
| BstSLI | GKGCMC | 1 cut(s) | 282 |
| BstV1I | GCAGC | 3 cut(s) | 333, 354, 384 |
| BstV2I | GAAGAC | 1 cut(s) | 172 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 601 |
| BsuRI | GGCC | 3 cut(s) | 137, 176, 683 |
| BtgI | CCRYGG | 1 cut(s) | 45 |
| BtsCI | GGATG | 4 cut(s) | 82, 238, 274, 713 |
| Cac8I | GCNNGC | 2 cut(s) | 442, 685 |
| CciI | TCATGA | 1 cut(s) | 676 |
| CfoI | GCGC | 1 cut(s) | 58 |
| Cfr10I | RCCGGY | 1 cut(s) | 440 |
| CseI | GACGC | 4 cut(s) | 134, 338, 352, 507 |
| CviAII | CATG | 5 cut(s) | 263, 437, 490, 578, 677 |
| CviJI | RGCY | 7 cut(s) | 67, 137, 176, 229, 462, 663, 683 |
| CviKI_1 | RGCY | 7 cut(s) | 67, 137, 176, 229, 462, 663, 683 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DriI | GACNNNNNGTC | 1 cut(s) | 348 |
| EaeI | YGGCCR | 1 cut(s) | 135 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 348 |
| Eco130I | CCWWGG | 1 cut(s) | 401 |
| Eco147I | AGGCCT | 1 cut(s) | 683 |
| Eco47III | AGCGCT | 1 cut(s) | 57 |
| Eco57I | CTGAAG | 1 cut(s) | 166 |
| Eco91I | GGTNACC | 1 cut(s) | 581 |
| EcoO65I | GGTNACC | 1 cut(s) | 581 |
| EcoRII | CCWGG | 1 cut(s) | 473 |
| EcoT14I | CCWWGG | 1 cut(s) | 401 |
| ErhI | CCWWGG | 1 cut(s) | 401 |
| Esp3I | CGTCTC | 1 cut(s) | 383 |
| FaeI | CATG | 5 cut(s) | 266, 440, 493, 581, 680 |
| FatI | CATG | 5 cut(s) | 262, 436, 489, 577, 676 |
| FblI | GTMKAC | 2 cut(s) | 499, 637 |
| Fnu4HI | GCNGC | 3 cut(s) | 347, 368, 398 |
| FokI | GGATG | 4 cut(s) | 69, 245, 281, 720 |
| Fsp4HI | GCNGC | 3 cut(s) | 347, 368, 398 |
| FspBI | CTAG | 1 cut(s) | 720 |
| GlaI | GCGC | 1 cut(s) | 57 |
| GluI | GCNGC | 3 cut(s) | 347, 368, 398 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HaeII | RGCGCY | 1 cut(s) | 59 |
| HaeIII | GGCC | 3 cut(s) | 137, 176, 683 |
| HapII | CCGG | 2 cut(s) | 244, 441 |
| HgaI | GACGC | 4 cut(s) | 134, 338, 352, 507 |
| HhaI | GCGC | 1 cut(s) | 58 |
| Hin1I | GRCGYC | 2 cut(s) | 392, 640 |
| Hin1II | CATG | 5 cut(s) | 266, 440, 493, 581, 680 |
| Hin6I | GCGC | 1 cut(s) | 56 |
| HinP1I | GCGC | 1 cut(s) | 56 |
| HindIII | AAGCTT | 1 cut(s) | 661 |
| HinfI | GANTC | 3 cut(s) | 30, 648, 673 |
| HpaII | CCGG | 2 cut(s) | 244, 441 |
| HphI | GGTGA | 2 cut(s) | 593, 682 |
| Hpy166II | GTNNAC | 4 cut(s) | 280, 377, 500, 638 |
| Hpy188I | TCNGA | 2 cut(s) | 75, 121 |
| Hpy188III | TCNNGA | 5 cut(s) | 62, 198, 374, 566, 677 |
| Hpy8I | GTNNAC | 4 cut(s) | 280, 377, 500, 638 |
| Hpy99I | CGWCG | 2 cut(s) | 346, 397 |
| HpyAV | CCTTC | 3 cut(s) | 96, 106, 473 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 3 cut(s) | 392, 537, 640 |
| HpyCH4V | TGCA | 6 cut(s) | 36, 151, 209, 280, 615, 622 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 64 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| HpySE526I | ACGT | 3 cut(s) | 392, 537, 640 |
| Hsp92I | GRCGYC | 2 cut(s) | 392, 640 |
| Hsp92II | CATG | 5 cut(s) | 266, 440, 493, 581, 680 |
| HspAI | GCGC | 1 cut(s) | 56 |
| KroI | GCCGGC | 1 cut(s) | 440 |
| KroNI | GCCGGC | 1 cut(s) | 442 |
| LmnI | GCTCC | 2 cut(s) | 64, 438 |
| Lsp1109I | GCAGC | 3 cut(s) | 333, 354, 384 |
| LweI | GCATC | 1 cut(s) | 88 |
| MaeI | CTAG | 1 cut(s) | 720 |
| MaeII | ACGT | 3 cut(s) | 392, 537, 640 |
| MaeIII | GTNAC | 1 cut(s) | 581 |
| MboII | GAAGA | 1 cut(s) | 172 |
| MfeI | CAATTG | 1 cut(s) | 166 |
| MhlI | GDGCHC | 1 cut(s) | 282 |
| MlsI | TGGCCA | 1 cut(s) | 137 |
| MluCI | AATT | 4 cut(s) | 19, 69, 139, 166 |
| MluNI | TGGCCA | 1 cut(s) | 137 |
| MlyI | GAGTC | 1 cut(s) | 682 |
| MmeI | TCCRAC | 2 cut(s) | 513, 582 |
| Mox20I | TGGCCA | 1 cut(s) | 137 |
| MroNI | GCCGGC | 1 cut(s) | 440 |
| MroXI | GAANNNNTTC | 1 cut(s) | 573 |
| MscI | TGGCCA | 1 cut(s) | 137 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| Msp20I | TGGCCA | 1 cut(s) | 137 |
| MspI | CCGG | 2 cut(s) | 244, 441 |
| MspR9I | CCNGG | 1 cut(s) | 475 |
| MunI | CAATTG | 1 cut(s) | 166 |
| MvaI | CCWGG | 1 cut(s) | 475 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 64 |
| NaeI | GCCGGC | 1 cut(s) | 442 |
| NgoMIV | GCCGGC | 1 cut(s) | 440 |
| NlaIII | CATG | 5 cut(s) | 266, 440, 493, 581, 680 |
| NlaIV | GGNNCC | 1 cut(s) | 242 |
| NmuCI | GTSAC | 1 cut(s) | 581 |
| PagI | TCATGA | 1 cut(s) | 676 |
| PceI | AGGCCT | 1 cut(s) | 683 |
| PdiI | GCCGGC | 1 cut(s) | 442 |
| PdmI | GAANNNNTTC | 1 cut(s) | 573 |
| PfeI | GAWTC | 2 cut(s) | 30, 648 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 290 |
| PkrI | GCNGC | 3 cut(s) | 348, 369, 399 |
| PleI | GAGTC | 1 cut(s) | 681 |
| PpsI | GAGTC | 1 cut(s) | 681 |
| Psp6I | CCWGG | 1 cut(s) | 473 |
| PspEI | GGTNACC | 1 cut(s) | 581 |
| PspGI | CCWGG | 1 cut(s) | 473 |
| PspN4I | GGNNCC | 1 cut(s) | 242 |
| PstI | CTGCAG | 1 cut(s) | 153 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SatI | GCNGC | 3 cut(s) | 347, 368, 398 |
| SchI | GAGTC | 1 cut(s) | 682 |
| ScrFI | CCNGG | 1 cut(s) | 475 |
| SduI | GDGCHC | 1 cut(s) | 282 |
| SfaNI | GCATC | 1 cut(s) | 88 |
| SfcI | CTRYAG | 1 cut(s) | 149 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| Sse9I | AATT | 4 cut(s) | 19, 69, 139, 166 |
| SseBI | AGGCCT | 1 cut(s) | 683 |
| SspMI | CTAG | 1 cut(s) | 720 |
| StuI | AGGCCT | 1 cut(s) | 683 |
| StyD4I | CCNGG | 1 cut(s) | 473 |
| StyI | CCWWGG | 1 cut(s) | 401 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaiI | ACGT | 3 cut(s) | 395, 540, 643 |
| TaqI | TCGA | 2 cut(s) | 296, 646 |
| TasI | AATT | 4 cut(s) | 19, 69, 139, 166 |
| TfiI | GAWTC | 2 cut(s) | 30, 648 |
| TseFI | GTSAC | 1 cut(s) | 581 |
| TseI | GCWGC | 3 cut(s) | 346, 367, 397 |
| Tsp45I | GTSAC | 1 cut(s) | 581 |
| TspDTI | ATGAA | 3 cut(s) | 17, 82, 566 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 290 |
| VneI | GTGCAC | 1 cut(s) | 278 |
| XmiI | GTMKAC | 2 cut(s) | 499, 637 |
| XmnI | GAANNNNTTC | 1 cut(s) | 573 |
| XspI | CTAG | 1 cut(s) | 720 |
| ZraI | GACGTC | 2 cut(s) | 393, 641 |