ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 18 |
| AclWI | GGATC | 1 cut(s) | 279 |
| AcoI | YGGCCR | 1 cut(s) | 467 |
| AcsI | RAATTY | 2 cut(s) | 488, 777 |
| AfaI | GTAC | 5 cut(s) | 55, 720, 738, 804, 892 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 240, 241, 283 |
| AgsI | TTSAA | 6 cut(s) | 181, 487, 494, 509, 1056, 1085 |
| AjnI | CCWGG | 2 cut(s) | 49, 276 |
| AluBI | AGCT | 4 cut(s) | 331, 347, 759, 959 |
| AluI | AGCT | 4 cut(s) | 331, 347, 759, 959 |
| Alw21I | GWGCWC | 1 cut(s) | 449 |
| Alw26I | GTCTC | 4 cut(s) | 126, 643, 771, 934 |
| AlwI | GGATC | 1 cut(s) | 279 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 811 |
| AoxI | GGCC | 2 cut(s) | 214, 467 |
| ApeKI | GCWGC | 1 cut(s) | 331 |
| ApoI | RAATTY | 2 cut(s) | 488, 777 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 10 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 3 cut(s) | 215, 296, 701 |
| AsuHPI | GGTGA | 4 cut(s) | 56, 185, 550, 833 |
| AvaII | GGWCC | 2 cut(s) | 296, 701 |
| BauI | CACGAG | 1 cut(s) | 1022 |
| BbsI | GAAGAC | 1 cut(s) | 308 |
| Bbv12I | GWGCWC | 1 cut(s) | 449 |
| BbvCI | CCTCAGC | 1 cut(s) | 812 |
| BbvI | GCAGC | 1 cut(s) | 318 |
| BccI | CCATC | 4 cut(s) | 67, 206, 367, 905 |
| BceAI | ACGGC | 2 cut(s) | 482, 663 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 376, 410 |
| BciT130I | CCWGG | 2 cut(s) | 51, 278 |
| BciVI | GTATCC | 1 cut(s) | 628 |
| BcoDI | GTCTC | 4 cut(s) | 126, 643, 771, 934 |
| BfaI | CTAG | 2 cut(s) | 93, 606 |
| BfuI | GTATCC | 1 cut(s) | 628 |
| BglII | AGATCT | 1 cut(s) | 794 |
| BisI | GCNGC | 1 cut(s) | 332 |
| BlsI | GCNGC | 1 cut(s) | 333 |
| BmcAI | AGTACT | 1 cut(s) | 738 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 278 |
| Bme18I | GGWCC | 2 cut(s) | 296, 701 |
| BmgT120I | GGNCC | 3 cut(s) | 215, 296, 701 |
| BmiI | GGNNCC | 2 cut(s) | 231, 677 |
| BmrFI | CCNGG | 2 cut(s) | 51, 278 |
| BmrI | ACTGGG | 1 cut(s) | 573 |
| BmsI | GCATC | 4 cut(s) | 28, 406, 939, 988 |
| BmuI | ACTGGG | 1 cut(s) | 573 |
| BpiI | GAAGAC | 1 cut(s) | 308 |
| Bpu10I | CCTNAGC | 2 cut(s) | 437, 812 |
| BsaAI | YACGTR | 1 cut(s) | 894 |
| BsaBI | GATNNNNATC | 1 cut(s) | 417 |
| BsaI | GGTCTC | 1 cut(s) | 934 |
| BsaJI | CCNNGG | 3 cut(s) | 158, 470, 708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 878, 908 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 240, 241, 283 |
| Bse1I | ACTGG | 5 cut(s) | 79, 342, 568, 699, 838 |
| Bse8I | GATNNNNATC | 1 cut(s) | 417 |
| BseBI | CCWGG | 2 cut(s) | 51, 278 |
| BseDI | CCNNGG | 3 cut(s) | 158, 470, 708 |
| BseGI | GGATG | 1 cut(s) | 511 |
| BseJI | GATNNNNATC | 1 cut(s) | 417 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 240, 241, 283 |
| BseMII | CTCAG | 2 cut(s) | 782, 803 |
| BseNI | ACTGG | 5 cut(s) | 79, 342, 568, 699, 838 |
| BseRI | GAGGAG | 2 cut(s) | 899, 1076 |
| BseXI | GCAGC | 1 cut(s) | 318 |
| Bsh1285I | CGRYCG | 1 cut(s) | 227 |
| BshFI | GGCC | 2 cut(s) | 216, 469 |
| BsiEI | CGRYCG | 1 cut(s) | 227 |
| BsiHKAI | GWGCWC | 1 cut(s) | 449 |
| BslFI | GGGAC | 2 cut(s) | 122, 437 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 240, 241, 283 |
| BsmAI | GTCTC | 4 cut(s) | 126, 643, 771, 934 |
| BsmFI | GGGAC | 2 cut(s) | 122, 437 |
| BsnI | GGCC | 2 cut(s) | 216, 469 |
| Bso31I | GGTCTC | 1 cut(s) | 934 |
| Bsp1286I | GDGCHC | 1 cut(s) | 449 |
| Bsp1407I | TGTACA | 1 cut(s) | 718 |
| Bsp143I | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| Bsp19I | CCATGG | 1 cut(s) | 158 |
| BspANI | GGCC | 2 cut(s) | 216, 469 |
| BspCNI | CTCAG | 2 cut(s) | 781, 804 |
| BspLI | GGNNCC | 2 cut(s) | 231, 677 |
| BspPI | GGATC | 1 cut(s) | 279 |
| BspTNI | GGTCTC | 1 cut(s) | 934 |
| BsrGI | TGTACA | 1 cut(s) | 718 |
| BsrI | ACTGG | 5 cut(s) | 79, 342, 568, 699, 838 |
| BssECI | CCNNGG | 3 cut(s) | 158, 470, 708 |
| BssMI | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| BssSI | CACGAG | 1 cut(s) | 1022 |
| BssT1I | CCWWGG | 2 cut(s) | 158, 470 |
| Bst2BI | CACGAG | 1 cut(s) | 1022 |
| Bst2UI | CCWGG | 2 cut(s) | 51, 278 |
| Bst4CI | ACNGT | 5 cut(s) | 197, 296, 451, 521, 807 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 127 |
| BstAUI | TGTACA | 1 cut(s) | 718 |
| BstBAI | YACGTR | 1 cut(s) | 894 |
| BstC8I | GCNNGC | 1 cut(s) | 445 |
| BstDEI | CTNAG | 4 cut(s) | 407, 437, 768, 812 |
| BstDSI | CCRYGG | 1 cut(s) | 158 |
| BstEII | GGTNACC | 1 cut(s) | 821 |
| BstF5I | GGATG | 1 cut(s) | 511 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 5 cut(s) | 227, 274, 421, 597, 797 |
| BstMAI | GTCTC | 4 cut(s) | 126, 643, 771, 934 |
| BstMBI | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| BstMCI | CGRYCG | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 127 |
| BstNI | CCWGG | 2 cut(s) | 51, 278 |
| BstPI | GGTNACC | 1 cut(s) | 821 |
| BstSCI | CCNGG | 2 cut(s) | 49, 276 |
| BstV1I | GCAGC | 1 cut(s) | 318 |
| BstV2I | GAAGAC | 1 cut(s) | 308 |
| BstX2I | RGATCY | 2 cut(s) | 271, 794 |
| BstYI | RGATCY | 2 cut(s) | 271, 794 |
| BsuI | GTATCC | 1 cut(s) | 628 |
| BsuRI | GGCC | 2 cut(s) | 216, 469 |
| BtgI | CCRYGG | 1 cut(s) | 158 |
| BtsCI | GGATG | 1 cut(s) | 511 |
| BtsIMutI | CAGTG | 3 cut(s) | 72, 812, 831 |
| Cac8I | GCNNGC | 1 cut(s) | 445 |
| CaiI | CAGNNNCTG | 1 cut(s) | 811 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 3 cut(s) | 215, 296, 701 |
| CpoI | CGGWCCG | 1 cut(s) | 296 |
| CsiI | ACCWGGT | 1 cut(s) | 49 |
| Csp6I | GTAC | 5 cut(s) | 54, 719, 737, 803, 891 |
| CspI | CGGWCCG | 1 cut(s) | 296 |
| CviAII | CATG | 3 cut(s) | 159, 309, 661 |
| CviQI | GTAC | 5 cut(s) | 54, 719, 737, 803, 891 |
| DdeI | CTNAG | 4 cut(s) | 407, 437, 768, 812 |
| DpnI | GATC | 5 cut(s) | 226, 273, 420, 596, 796 |
| DpnII | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| EaeI | YGGCCR | 1 cut(s) | 467 |
| Eco130I | CCWWGG | 2 cut(s) | 158, 470 |
| Eco31I | GGTCTC | 1 cut(s) | 934 |
| Eco47I | GGWCC | 2 cut(s) | 296, 701 |
| Eco91I | GGTNACC | 1 cut(s) | 821 |
| EcoO65I | GGTNACC | 1 cut(s) | 821 |
| EcoRII | CCWGG | 2 cut(s) | 49, 276 |
| EcoT14I | CCWWGG | 2 cut(s) | 158, 470 |
| ErhI | CCWWGG | 2 cut(s) | 158, 470 |
| FaeI | CATG | 3 cut(s) | 162, 312, 664 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 623, 655 |
| FaqI | GGGAC | 2 cut(s) | 122, 437 |
| FatI | CATG | 3 cut(s) | 158, 308, 660 |
| FauNDI | CATATG | 1 cut(s) | 24 |
| Fnu4HI | GCNGC | 1 cut(s) | 332 |
| FokI | GGATG | 1 cut(s) | 498 |
| Fsp4HI | GCNGC | 1 cut(s) | 332 |
| FspBI | CTAG | 2 cut(s) | 93, 606 |
| FspI | TGCGCA | 1 cut(s) | 18 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 332 |
| HaeIII | GGCC | 2 cut(s) | 216, 469 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1II | CATG | 3 cut(s) | 162, 312, 664 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HindIII | AAGCTT | 1 cut(s) | 757 |
| HinfI | GANTC | 6 cut(s) | 69, 149, 246, 413, 837, 859 |
| HphI | GGTGA | 4 cut(s) | 56, 185, 550, 833 |
| Hpy166II | GTNNAC | 2 cut(s) | 47, 719 |
| Hpy188I | TCNGA | 7 cut(s) | 229, 300, 322, 418, 712, 864, 964 |
| Hpy188III | TCNNGA | 6 cut(s) | 250, 515, 683, 770, 995, 1056 |
| Hpy8I | GTNNAC | 2 cut(s) | 47, 719 |
| Hpy99I | CGWCG | 1 cut(s) | 103 |
| HpyAV | CCTTC | 4 cut(s) | 247, 529, 625, 692 |
| HpyCH4III | ACNGT | 5 cut(s) | 197, 296, 451, 521, 807 |
| HpyCH4IV | ACGT | 1 cut(s) | 893 |
| HpyCH4V | TGCA | 2 cut(s) | 354, 397 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 127 |
| HpyF3I | CTNAG | 4 cut(s) | 407, 437, 768, 812 |
| HpySE526I | ACGT | 1 cut(s) | 893 |
| Hsp92II | CATG | 3 cut(s) | 162, 312, 664 |
| HspAI | GCGC | 1 cut(s) | 17 |
| Kzo9I | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| LmnI | GCTCC | 1 cut(s) | 675 |
| Lsp1109I | GCAGC | 1 cut(s) | 318 |
| LweI | GCATC | 4 cut(s) | 28, 406, 939, 988 |
| MabI | ACCWGGT | 1 cut(s) | 49 |
| MaeI | CTAG | 2 cut(s) | 93, 606 |
| MaeII | ACGT | 1 cut(s) | 893 |
| MaeIII | GTNAC | 5 cut(s) | 538, 559, 583, 750, 821 |
| MalI | GATC | 5 cut(s) | 226, 273, 420, 596, 796 |
| MboI | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| MboII | GAAGA | 7 cut(s) | 217, 313, 392, 604, 698, 785, 914 |
| MfeI | CAATTG | 1 cut(s) | 122 |
| MflI | RGATCY | 2 cut(s) | 271, 794 |
| MhlI | GDGCHC | 1 cut(s) | 449 |
| MluCI | AATT | 6 cut(s) | 122, 488, 526, 669, 689, 777 |
| MmeI | TCCRAC | 2 cut(s) | 597, 948 |
| MroXI | GAANNNNTTC | 1 cut(s) | 10 |
| MseI | TTAA | 2 cut(s) | 191, 1068 |
| MspR9I | CCNGG | 2 cut(s) | 51, 278 |
| MunI | CAATTG | 1 cut(s) | 122 |
| MvaI | CCWGG | 2 cut(s) | 51, 278 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 127 |
| NcoI | CCATGG | 1 cut(s) | 158 |
| NdeI | CATATG | 1 cut(s) | 24 |
| NdeII | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| NlaIII | CATG | 3 cut(s) | 162, 312, 664 |
| NlaIV | GGNNCC | 2 cut(s) | 231, 677 |
| NmuCI | GTSAC | 3 cut(s) | 538, 583, 821 |
| NsbI | TGCGCA | 1 cut(s) | 18 |
| PdmI | GAANNNNTTC | 1 cut(s) | 10 |
| PfeI | GAWTC | 6 cut(s) | 69, 149, 246, 413, 837, 859 |
| PfoI | TCCNGGA | 1 cut(s) | 276 |
| PkrI | GCNGC | 1 cut(s) | 333 |
| Ple19I | CGATCG | 1 cut(s) | 227 |
| Ppu21I | YACGTR | 1 cut(s) | 894 |
| Psp6I | CCWGG | 2 cut(s) | 49, 276 |
| PspEI | GGTNACC | 1 cut(s) | 821 |
| PspGI | CCWGG | 2 cut(s) | 49, 276 |
| PspN4I | GGNNCC | 2 cut(s) | 231, 677 |
| PspPI | GGNCC | 3 cut(s) | 215, 296, 701 |
| PstNI | CAGNNNCTG | 1 cut(s) | 811 |
| PsuI | RGATCY | 2 cut(s) | 271, 794 |
| PvuI | CGATCG | 1 cut(s) | 227 |
| RsaI | GTAC | 5 cut(s) | 55, 720, 738, 804, 892 |
| RsaNI | GTAC | 5 cut(s) | 54, 719, 737, 803, 891 |
| Rsr2I | CGGWCCG | 1 cut(s) | 296 |
| RsrII | CGGWCCG | 1 cut(s) | 296 |
| SaqAI | TTAA | 2 cut(s) | 191, 1068 |
| SatI | GCNGC | 1 cut(s) | 332 |
| Sau3AI | GATC | 5 cut(s) | 224, 271, 418, 594, 794 |
| Sau96I | GGNCC | 3 cut(s) | 215, 296, 701 |
| ScaI | AGTACT | 1 cut(s) | 738 |
| ScrFI | CCNGG | 2 cut(s) | 51, 278 |
| SduI | GDGCHC | 1 cut(s) | 449 |
| SexAI | ACCWGGT | 1 cut(s) | 49 |
| SfaNI | GCATC | 4 cut(s) | 28, 406, 939, 988 |
| SinI | GGWCC | 2 cut(s) | 296, 701 |
| Sse9I | AATT | 6 cut(s) | 122, 488, 526, 669, 689, 777 |
| SspMI | CTAG | 2 cut(s) | 93, 606 |
| StyD4I | CCNGG | 2 cut(s) | 49, 276 |
| StyI | CCWWGG | 2 cut(s) | 158, 470 |
| TaaI | ACNGT | 5 cut(s) | 197, 296, 451, 521, 807 |
| TaiI | ACGT | 1 cut(s) | 896 |
| TaqII | GACCGA | 1 cut(s) | 840 |
| TasI | AATT | 6 cut(s) | 122, 488, 526, 669, 689, 777 |
| TatI | WGTACW | 3 cut(s) | 718, 736, 802 |
| TfiI | GAWTC | 6 cut(s) | 69, 149, 246, 413, 837, 859 |
| Tru1I | TTAA | 2 cut(s) | 191, 1068 |
| Tru9I | TTAA | 2 cut(s) | 191, 1068 |
| TscAI | CASTG | 3 cut(s) | 79, 812, 838 |
| TseFI | GTSAC | 3 cut(s) | 538, 583, 821 |
| TseI | GCWGC | 1 cut(s) | 331 |
| Tsp45I | GTSAC | 3 cut(s) | 538, 583, 821 |
| TspDTI | ATGAA | 2 cut(s) | 833, 1043 |
| TspGWI | ACGGA | 2 cut(s) | 116, 693 |
| TspRI | CASTG | 3 cut(s) | 79, 812, 838 |
| VpaK11BI | GGWCC | 2 cut(s) | 296, 701 |
| XapI | RAATTY | 2 cut(s) | 488, 777 |
| XmnI | GAANNNNTTC | 1 cut(s) | 10 |
| XspI | CTAG | 2 cut(s) | 93, 606 |
| ZrmI | AGTACT | 1 cut(s) | 738 |