Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 165, 258 |
| AciI | CCGC | 1 cut(s) | 197 |
| AclWI | GGATC | 1 cut(s) | 159 |
| AdeI | CACNNNGTG | 1 cut(s) | 293 |
| AfaI | GTAC | 3 cut(s) | 121, 243, 247 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 376 |
| AflII | CTTAAG | 1 cut(s) | 10 |
| AgsI | TTSAA | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 204, 289 |
| AluBI | AGCT | 1 cut(s) | 364 |
| AluI | AGCT | 1 cut(s) | 364 |
| Alw21I | GWGCWC | 1 cut(s) | 289 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| Alw44I | GTGCAC | 1 cut(s) | 285 |
| AlwI | GGATC | 1 cut(s) | 159 |
| AoxI | GGCC | 1 cut(s) | 202 |
| ApaLI | GTGCAC | 1 cut(s) | 285 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| AspLEI | GCGC | 3 cut(s) | 58, 166, 259 |
| AsuHPI | GGTGA | 2 cut(s) | 305, 415 |
| BaeGI | GKGCMC | 1 cut(s) | 289 |
| Bbv12I | GWGCWC | 1 cut(s) | 289 |
| BbvCI | CCTCAGC | 1 cut(s) | 59 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BciT130I | CCWGG | 2 cut(s) | 206, 291 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BfoI | RGCGCY | 1 cut(s) | 59 |
| BfrI | CTTAAG | 1 cut(s) | 10 |
| BisI | GCNGC | 1 cut(s) | 362 |
| BlsI | GCNGC | 1 cut(s) | 363 |
| BmcAI | AGTACT | 1 cut(s) | 121 |
| Bme1390I | CCNGG | 2 cut(s) | 206, 291 |
| BmrFI | CCNGG | 2 cut(s) | 206, 291 |
| BmsI | GCATC | 1 cut(s) | 268 |
| Bpu10I | CCTNAGC | 1 cut(s) | 59 |
| BpuEI | CTTGAG | 1 cut(s) | 202 |
| BsaAI | YACGTR | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 2 cut(s) | 299, 398 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 376 |
| BseBI | CCWGG | 2 cut(s) | 206, 291 |
| BseDI | CCNNGG | 2 cut(s) | 299, 398 |
| BseGI | GGATG | 2 cut(s) | 10, 232 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 376 |
| BseMII | CTCAG | 1 cut(s) | 50 |
| BseSI | GKGCMC | 1 cut(s) | 289 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BshFI | GGCC | 1 cut(s) | 204 |
| BsiHKAI | GWGCWC | 1 cut(s) | 289 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 376 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| BsnI | GGCC | 1 cut(s) | 204 |
| Bsp1286I | GDGCHC | 1 cut(s) | 289 |
| Bsp143I | GATC | 3 cut(s) | 69, 151, 343 |
| BspACI | CCGC | 1 cut(s) | 197 |
| BspANI | GGCC | 1 cut(s) | 204 |
| BspCNI | CTCAG | 1 cut(s) | 51 |
| BspPI | GGATC | 1 cut(s) | 159 |
| BspTI | CTTAAG | 1 cut(s) | 10 |
| BssECI | CCNNGG | 2 cut(s) | 299, 398 |
| BssMI | GATC | 3 cut(s) | 69, 151, 343 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst2UI | CCWGG | 2 cut(s) | 206, 291 |
| Bst4CI | ACNGT | 2 cut(s) | 250, 300 |
| Bst6I | CTCTTC | 1 cut(s) | 399 |
| BstAFI | CTTAAG | 1 cut(s) | 10 |
| BstBAI | YACGTR | 1 cut(s) | 245 |
| BstDEI | CTNAG | 1 cut(s) | 59 |
| BstDSI | CCRYGG | 1 cut(s) | 299 |
| BstF5I | GGATG | 2 cut(s) | 10, 232 |
| BstH2I | RGCGCY | 1 cut(s) | 59 |
| BstHHI | GCGC | 3 cut(s) | 58, 166, 259 |
| BstKTI | GATC | 3 cut(s) | 72, 154, 346 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMBI | GATC | 3 cut(s) | 69, 151, 343 |
| BstNI | CCWGG | 2 cut(s) | 206, 291 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 2 cut(s) | 204, 289 |
| BstSLI | GKGCMC | 1 cut(s) | 289 |
| BstSNI | TACGTA | 1 cut(s) | 245 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| BstX2I | RGATCY | 1 cut(s) | 151 |
| BstYI | RGATCY | 1 cut(s) | 151 |
| BsuRI | GGCC | 1 cut(s) | 204 |
| BtgI | CCRYGG | 1 cut(s) | 299 |
| BtsCI | GGATG | 2 cut(s) | 10, 232 |
| CfoI | GCGC | 3 cut(s) | 58, 166, 259 |
| CseI | GACGC | 1 cut(s) | 278 |
| CsiI | ACCWGGT | 1 cut(s) | 289 |
| Csp6I | GTAC | 3 cut(s) | 120, 242, 246 |
| CviAII | CATG | 2 cut(s) | 239, 329 |
| CviJI | RGCY | 4 cut(s) | 85, 204, 364, 380 |
| CviKI_1 | RGCY | 4 cut(s) | 85, 204, 364, 380 |
| CviQI | GTAC | 3 cut(s) | 120, 242, 246 |
| DdeI | CTNAG | 1 cut(s) | 59 |
| DpnI | GATC | 3 cut(s) | 71, 153, 345 |
| DpnII | GATC | 3 cut(s) | 69, 151, 343 |
| DraIII | CACNNNGTG | 1 cut(s) | 293 |
| Eam1104I | CTCTTC | 1 cut(s) | 399 |
| EarI | CTCTTC | 1 cut(s) | 399 |
| Eco105I | TACGTA | 1 cut(s) | 245 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco147I | AGGCCT | 1 cut(s) | 204 |
| EcoRII | CCWGG | 2 cut(s) | 204, 289 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| EcoT22I | ATGCAT | 1 cut(s) | 240 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FaeI | CATG | 2 cut(s) | 242, 332 |
| FaiI | YATR | 4 cut(s) | 236, 240, 324, 330 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 164, 196 |
| FatI | CATG | 2 cut(s) | 238, 328 |
| FauI | CCCGC | 1 cut(s) | 190 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| Fnu4HI | GCNGC | 1 cut(s) | 362 |
| FokI | GGATG | 2 cut(s) | 17, 239 |
| Fsp4HI | GCNGC | 1 cut(s) | 362 |
| FspBI | CTAG | 1 cut(s) | 155 |
| FspI | TGCGCA | 2 cut(s) | 165, 258 |
| GlaI | GCGC | 3 cut(s) | 57, 165, 258 |
| GluI | GCNGC | 1 cut(s) | 362 |
| HaeII | RGCGCY | 1 cut(s) | 59 |
| HaeIII | GGCC | 1 cut(s) | 204 |
| HgaI | GACGC | 1 cut(s) | 278 |
| HhaI | GCGC | 3 cut(s) | 58, 166, 259 |
| Hin1II | CATG | 2 cut(s) | 242, 332 |
| Hin6I | GCGC | 3 cut(s) | 56, 164, 257 |
| HinP1I | GCGC | 3 cut(s) | 56, 164, 257 |
| HinfI | GANTC | 3 cut(s) | 30, 353, 389 |
| HphI | GGTGA | 2 cut(s) | 305, 415 |
| Hpy166II | GTNNAC | 2 cut(s) | 287, 296 |
| Hpy188III | TCNNGA | 2 cut(s) | 181, 217 |
| Hpy8I | GTNNAC | 2 cut(s) | 287, 296 |
| HpyAV | CCTTC | 1 cut(s) | 166 |
| HpyCH4III | ACNGT | 2 cut(s) | 250, 300 |
| HpyCH4IV | ACGT | 1 cut(s) | 244 |
| HpyCH4V | TGCA | 6 cut(s) | 24, 36, 145, 238, 287, 332 |
| HpyF3I | CTNAG | 1 cut(s) | 59 |
| HpySE526I | ACGT | 1 cut(s) | 244 |
| Hsp92II | CATG | 2 cut(s) | 242, 332 |
| HspAI | GCGC | 3 cut(s) | 56, 164, 257 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| Kzo9I | GATC | 3 cut(s) | 69, 151, 343 |
| LpnPI | CCDG | 7 cut(s) | 179, 191, 202, 218, 276, 300, 303 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| LweI | GCATC | 1 cut(s) | 268 |
| MabI | ACCWGGT | 1 cut(s) | 289 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MaeII | ACGT | 1 cut(s) | 244 |
| MalI | GATC | 3 cut(s) | 71, 153, 345 |
| MboI | GATC | 3 cut(s) | 69, 151, 343 |
| MboII | GAAGA | 2 cut(s) | 353, 386 |
| MflI | RGATCY | 1 cut(s) | 151 |
| MhlI | GDGCHC | 1 cut(s) | 289 |
| MluCI | AATT | 3 cut(s) | 19, 90, 276 |
| MnlI | CCTC | 6 cut(s) | 54, 96, 120, 169, 194, 217 |
| Mph1103I | ATGCAT | 1 cut(s) | 240 |
| MseI | TTAA | 1 cut(s) | 11 |
| MspCI | CTTAAG | 1 cut(s) | 10 |
| MspR9I | CCNGG | 2 cut(s) | 206, 291 |
| MvaI | CCWGG | 2 cut(s) | 206, 291 |
| NdeII | GATC | 3 cut(s) | 69, 151, 343 |
| NlaIII | CATG | 2 cut(s) | 242, 332 |
| NsbI | TGCGCA | 2 cut(s) | 165, 258 |
| NsiI | ATGCAT | 1 cut(s) | 240 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PceI | AGGCCT | 1 cut(s) | 204 |
| PfeI | GAWTC | 3 cut(s) | 30, 353, 389 |
| PkrI | GCNGC | 1 cut(s) | 363 |
| Ppu21I | YACGTR | 1 cut(s) | 245 |
| Psp6I | CCWGG | 2 cut(s) | 204, 289 |
| PspGI | CCWGG | 2 cut(s) | 204, 289 |
| PsuI | RGATCY | 1 cut(s) | 151 |
| RsaI | GTAC | 3 cut(s) | 121, 243, 247 |
| RsaNI | GTAC | 3 cut(s) | 120, 242, 246 |
| SaqAI | TTAA | 1 cut(s) | 11 |
| SatI | GCNGC | 1 cut(s) | 362 |
| Sau3AI | GATC | 3 cut(s) | 69, 151, 343 |
| ScaI | AGTACT | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 206, 291 |
| SduI | GDGCHC | 1 cut(s) | 289 |
| SetI | ASST | 4 cut(s) | 180, 247, 292, 366 |
| SexAI | ACCWGGT | 1 cut(s) | 289 |
| SfaNI | GCATC | 1 cut(s) | 268 |
| SmlI | CTYRAG | 2 cut(s) | 10, 181 |
| SmoI | CTYRAG | 2 cut(s) | 10, 181 |
| SnaBI | TACGTA | 1 cut(s) | 245 |
| Sse9I | AATT | 3 cut(s) | 19, 90, 276 |
| SseBI | AGGCCT | 1 cut(s) | 204 |
| SsiI | CCGC | 1 cut(s) | 197 |
| SspMI | CTAG | 1 cut(s) | 155 |
| StuI | AGGCCT | 1 cut(s) | 204 |
| StyD4I | CCNGG | 2 cut(s) | 204, 289 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 2 cut(s) | 250, 300 |
| TaiI | ACGT | 1 cut(s) | 247 |
| TaqI | TCGA | 1 cut(s) | 170 |
| TasI | AATT | 3 cut(s) | 19, 90, 276 |
| TatI | WGTACW | 1 cut(s) | 119 |
| TfiI | GAWTC | 3 cut(s) | 30, 353, 389 |
| Tru1I | TTAA | 1 cut(s) | 11 |
| Tru9I | TTAA | 1 cut(s) | 11 |
| TseI | GCWGC | 1 cut(s) | 361 |
| TspGWI | ACGGA | 1 cut(s) | 359 |
| Vha464I | CTTAAG | 1 cut(s) | 10 |
| VneI | GTGCAC | 1 cut(s) | 285 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XspI | CTAG | 1 cut(s) | 155 |
| ZrmI | AGTACT | 1 cut(s) | 121 |
| Zsp2I | ATGCAT | 1 cut(s) | 240 |