Rorug02G0173700

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
15827032 .. 15828752
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0173700.1

Sequence Viewer

Length: 1635 bp
ATGCCTCTCATCAAGATGCCTAATAATGATAATCAGGTTATTTCAGGTAAGCCTGAAACTCTGTTTCCCAACTCATTATTCCGCAACAAGGAGGACGGGATCAAACTGGCCCTAGAAGATCAACTATGCCGAGACTTCCAACTTCCATGGTCGGACGAAGAAGAGGAGCAAGAGGGGCTCGTTACCCAACGCCCCAAAATCACCACTGTGGTTTTTGACGAAATTAAGGCACTGTACACTCTTGCCATCCCCATGATCTTATCCGGCCTCTTAAACTACTCAAAGGCAGCCATCTCCATGTTTTTCATGGGGAAGCTTGGGAAATCTGCTCTGTCAGGAGGAAGCCTCGCCATAGGTGTTGCAAACATCACCGGATACTCTTTCATCTCCGGTCTCGCTACCGGGATGGATGGAATCGCTTCACAAGCATTTGGTGCTCGTAACGGCTGTCTTCTGTCACACACTCTACAGAGGACAATAGTTCTCCTACTCATCCTTTGCATGCCCATCACTTTGTTGTGGTATAACTTCGAATCTGTCCTTATCCACTCTGGCCAAAACCCATCCATCTCATCCATAGCCATTACCTATCTCAGATTCTCCATCCCAACCCTCTTGTTTCAGTCCCTCATCCACCCCATTAAAATTTACCTAAGGAGCCAGAAAGTCACCAGCCCTTTTACTCTCAGCACTGCCTTTTCGCTAGCCGTTCACATCCCAGCCAACTACGTCGCCGTTTACTGTCTTGACCTTGGCCTGGAAGGGATTGCACTCGCCGGTTGCTTGGCCGACTTCAATATCATGATGTCTCTTCTGGTTTATCTCTTTTTTTCTGGCCATCTTACTGTGAATTCTCTATGGTTCTGGCGAGACTGTGCGTCGTTTAGACACTATGAAGACTGGAGCCCCATTTTCAGTCTGGCGCTTCCGAGTTGCGCGTCGGTGTGTTTAGAGTGGTGGTGGTATGAGATCATGATTGTTTTCTCTGGACTTCTTGTCAATGCACCCGAGGCTGTGGCCACCGTGGGAATACTGATCCAGATGACCGCATTGATTTATCAGTTTCCTATCTCGTTGAACCAGGCCGTGTCGACTAGGGTGGGGAACGAGTTGGGGGCCGACAGACCGAAGCAAGCTCTGATGGCGTCTGTAGTTGCACTGGCATGTTCTATTCTCACAGGCATTGTCGCCATGAGTTTCATGATCGGAATGCGCAACGTTTGGGGGGGAATGTTCACGTCTGATCAGGCCATTATATCGCTGGTGGCGTCGGTCTTGCCGGTGGTAGGGCTTTGTGAGCTCGGGAACTGCCCCCAGACCACCGTCTGTGGAGTTTTGAGAGGCTGTGCACGGCCAACTTTGGCTGCGTACATAAACTTTGGCTCGTTTTATGGTGTGGGATTGCCTGCGGCCCTTGTGTTGGGCTTTGGGCTGGAGTTGGGCTTATTGGGCCTGTGGTTGGGCTTACTTGCGGCCCAAATGGTTTGCTTTGGGATCATGGTAGTGGCATTACTTCGAACGGACTGGGAGGAACAAGCAAATCGAGCATATGTACTCACATGTAGCTATCTAGGGGAGGAAGAAAATGAAACAAGCAAGGAAGAACCAGCACCTCCGGTTGTGGTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

59.26

Weight (kDa)

5.12

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 84 - 244 1.1e-28 MatE
MatE PF01554 310 - 471 4.4e-30 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1214
AccI GTMKAC 1 cut(s) 1091
AccII CGCG 1 cut(s) 938
AciI CCGC 4 cut(s) 82, 1047, 1409, 1472
AclI AACGTT 1 cut(s) 1218
AclWI GGATC 3 cut(s) 107, 1030, 1502
AcoI YGGCCR 5 cut(s) 553, 786, 835, 1017, 1352
AcsI RAATTY 2 cut(s) 645, 850
AcyI GRCGYC 2 cut(s) 1145, 1268
AfaI GTAC 3 cut(s) 236, 1370, 1554
AfiI CCNNNNNNNGG 5 cut(s) 88, 757, 1286, 1420, 1459
AflIII ACRYGT 1 cut(s) 1559
AgsI TTSAA 2 cut(s) 796, 1078
AhdI GACNNNNNGTC 2 cut(s) 877, 995
AjiI CACGTC 1 cut(s) 1239
AjnI CCWGG 2 cut(s) 756, 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 4 cut(s) 316, 1136, 1300, 1566
AluI AGCT 4 cut(s) 316, 1136, 1300, 1566
Alw21I GWGCWC 3 cut(s) 439, 1302, 1351
Alw26I GTCTC 4 cut(s) 126, 398, 813, 864
Alw44I GTGCAC 1 cut(s) 1347
AlwI GGATC 3 cut(s) 107, 1030, 1502
Ama87I CYCGRG 2 cut(s) 1007, 1301
ApaLI GTGCAC 1 cut(s) 1347
ApeKI GCWGC 2 cut(s) 287, 1364
ApoI RAATTY 2 cut(s) 645, 850
Asp700I GAANNNNTTC 1 cut(s) 418
AspLEI GCGC 3 cut(s) 925, 938, 1215
AspS9I GGNCC 5 cut(s) 109, 1116, 1411, 1450, 1474
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 193, 361, 661
AsuII TTCGAA 2 cut(s) 531, 1516
AsuNHI GCTAGC 1 cut(s) 703
AvaI CYCGRG 2 cut(s) 1007, 1301
AxyI CCTNAGG 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 1351
BalI TGGCCA 3 cut(s) 555, 837, 1019
BanII GRGCYC 3 cut(s) 180, 908, 1302
BbsI GAAGAC 2 cut(s) 443, 903
Bbv12I GWGCWC 3 cut(s) 439, 1302, 1351
BbvI GCAGC 2 cut(s) 299, 1351
BceAI ACGGC 5 cut(s) 460, 692, 719, 1070, 1367
BciT130I CCWGG 2 cut(s) 758, 1082
BciVI GTATCC 1 cut(s) 368
BclI TGATCA 1 cut(s) 1243
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 4 cut(s) 126, 398, 813, 864
BfaI CTAG 5 cut(s) 113, 704, 1095, 1571, 1633
BfmI CTRYAG 2 cut(s) 467, 1149
BfoI RGCGCY 1 cut(s) 926
BfuI GTATCC 1 cut(s) 368
BisI GCNGC 4 cut(s) 288, 1365, 1410, 1473
BlsI GCNGC 4 cut(s) 289, 1366, 1411, 1474
Bme1390I CCNGG 3 cut(s) 403, 758, 1082
BmeRI GACNNNNNGTC 2 cut(s) 877, 995
BmeT110I CYCGRG 2 cut(s) 1007, 1301
BmgBI CACGTC 1 cut(s) 1239
BmgT120I GGNCC 5 cut(s) 109, 1116, 1411, 1450, 1474
BmiI GGNNCC 3 cut(s) 659, 905, 1117
BmrFI CCNGG 3 cut(s) 403, 758, 1082
BmrI ACTGGG 1 cut(s) 1534
BmsI GCATC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 707
BmuI ACTGGG 1 cut(s) 1534
BoxI GACNNNNGTC 1 cut(s) 1322
BpiI GAAGAC 2 cut(s) 443, 903
BplI GAGNNNNNCTC 2 cut(s) 330, 362
BpmI CTGGAG 2 cut(s) 922, 1454
Bpu14I TTCGAA 2 cut(s) 531, 1516
BpuMI CCSGG 1 cut(s) 403
BsaHI GRCGYC 2 cut(s) 1145, 1268
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 4 cut(s) 146, 751, 1008, 1023
BsaWI WCCGGW 3 cut(s) 371, 389, 1615
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 757, 1286, 1420, 1459
Bse118I RCCGGY 2 cut(s) 776, 1279
Bse1I ACTGG 4 cut(s) 111, 905, 1164, 1529
Bse21I CCTNAGG 1 cut(s) 653
BseBI CCWGG 2 cut(s) 758, 1082
BseDI CCNNGG 4 cut(s) 146, 751, 1008, 1023
BseGI GGATG 9 cut(s) 246, 411, 415, 492, 563, 572, 603, 630, 714
BseLI CCNNNNNNNGG 5 cut(s) 88, 757, 1286, 1420, 1459
BseMII CTCAG 2 cut(s) 607, 700
BseNI ACTGG 4 cut(s) 111, 905, 1164, 1529
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 1351
BseXI GCAGC 2 cut(s) 299, 1351
BseYI CCCAGC 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 938
BsiHKAI GWGCWC 3 cut(s) 439, 1302, 1351
BsiHKCI CYCGRG 2 cut(s) 1007, 1301
BsiSI CCGG 7 cut(s) 264, 372, 390, 402, 777, 1280, 1616
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 5 cut(s) 88, 757, 1286, 1420, 1459
BsmAI GTCTC 4 cut(s) 126, 398, 813, 864
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 1215
Bso31I GGTCTC 1 cut(s) 398
BsoBI CYCGRG 2 cut(s) 1007, 1301
Bsp119I TTCGAA 2 cut(s) 531, 1516
Bsp1286I GDGCHC 5 cut(s) 180, 439, 908, 1302, 1351
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 4 cut(s) 82, 1047, 1409, 1472
BspCNI CTCAG 2 cut(s) 606, 699
BspFNI CGCG 1 cut(s) 938
BspHI TCATGA 3 cut(s) 801, 972, 1200
BspLI GGNNCC 3 cut(s) 659, 905, 1117
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 3 cut(s) 107, 1030, 1502
BspT104I TTCGAA 2 cut(s) 531, 1516
BspTNI GGTCTC 1 cut(s) 398
BsrFI RCCGGY 2 cut(s) 776, 1279
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 4 cut(s) 111, 905, 1164, 1529
BssAI RCCGGY 2 cut(s) 776, 1279
BssECI CCNNGG 4 cut(s) 146, 751, 1008, 1023
BssMI GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
BssNI GRCGYC 2 cut(s) 1145, 1268
BssT1I CCWWGG 2 cut(s) 146, 751
Bst2UI CCWGG 2 cut(s) 758, 1082
Bst4CI ACNGT 7 cut(s) 208, 234, 743, 847, 875, 1024, 1324
Bst6I CTCTTC 2 cut(s) 156, 816
BstACI GRCGYC 2 cut(s) 1145, 1268
BstAPI GCANNNNNTGC 1 cut(s) 434
BstAUI TGTACA 1 cut(s) 234
BstBI TTCGAA 2 cut(s) 531, 1516
BstC8I GCNNGC 4 cut(s) 503, 705, 1134, 1407
BstDEI CTNAG 3 cut(s) 593, 653, 686
BstDSI CCRYGG 2 cut(s) 146, 1023
BstF5I GGATG 9 cut(s) 246, 411, 415, 492, 563, 572, 603, 630, 714
BstFNI CGCG 1 cut(s) 938
BstH2I RGCGCY 1 cut(s) 926
BstHHI GCGC 3 cut(s) 925, 938, 1215
BstKTI GATC 8 cut(s) 102, 121, 258, 972, 1038, 1206, 1246, 1497
BstMAI GTCTC 4 cut(s) 126, 398, 813, 864
BstMBI GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
BstMWI GCNNNNNNNGC 8 cut(s) 175, 425, 434, 1010, 1142, 1297, 1449, 1544
BstNI CCWGG 2 cut(s) 758, 1082
BstNSI RCATGY 3 cut(s) 505, 1167, 1563
BstPAI GACNNNNGTC 1 cut(s) 1322
BstSCI CCNGG 3 cut(s) 401, 756, 1080
BstSFI CTRYAG 2 cut(s) 467, 1149
BstSLI GKGCMC 1 cut(s) 1351
BstUI CGCG 1 cut(s) 938
BstV1I GCAGC 2 cut(s) 299, 1351
BstV2I GAAGAC 2 cut(s) 443, 903
Bsu36I CCTNAGG 1 cut(s) 653
BsuI GTATCC 1 cut(s) 368
BtgI CCRYGG 2 cut(s) 146, 1023
BtrI CACGTC 1 cut(s) 1239
BtsCI GGATG 9 cut(s) 246, 411, 415, 492, 563, 572, 603, 630, 714
BtsI GCAGTG 1 cut(s) 690
BtsIMutI CAGTG 4 cut(s) 204, 230, 690, 1157
Cac8I GCNNGC 4 cut(s) 503, 705, 1134, 1407
CciI TCATGA 3 cut(s) 801, 972, 1200
CfoI GCGC 3 cut(s) 925, 938, 1215
Cfr10I RCCGGY 2 cut(s) 776, 1279
Cfr13I GGNCC 5 cut(s) 109, 1116, 1411, 1450, 1474
CseI GACGC 4 cut(s) 867, 927, 1134, 1257
Csp6I GTAC 3 cut(s) 235, 1369, 1553
CviQI GTAC 3 cut(s) 235, 1369, 1553
DdeI CTNAG 3 cut(s) 593, 653, 686
DpnI GATC 8 cut(s) 101, 120, 257, 971, 1037, 1205, 1245, 1496
DpnII GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
DriI GACNNNNNGTC 2 cut(s) 877, 995
EaeI YGGCCR 5 cut(s) 553, 786, 835, 1017, 1352
Eam1104I CTCTTC 2 cut(s) 156, 816
Eam1105I GACNNNNNGTC 2 cut(s) 877, 995
EarI CTCTTC 2 cut(s) 156, 816
Ecl136II GAGCTC 1 cut(s) 1300
Eco130I CCWWGG 2 cut(s) 146, 751
Eco24I GRGCYC 3 cut(s) 180, 908, 1302
Eco31I GGTCTC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 1300
Eco81I CCTNAGG 1 cut(s) 653
Eco88I CYCGRG 2 cut(s) 1007, 1301
EcoICRI GAGCTC 1 cut(s) 1300
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 2 cut(s) 756, 1080
EcoT14I CCWWGG 2 cut(s) 146, 751
EcoT38I GRGCYC 3 cut(s) 180, 908, 1302
ErhI CCWWGG 2 cut(s) 146, 751
FaqI GGGAC 1 cut(s) 610
FauNDI CATATG 1 cut(s) 1549
FbaI TGATCA 1 cut(s) 1243
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 4 cut(s) 288, 1365, 1410, 1473
FokI GGATG 9 cut(s) 233, 418, 422, 479, 550, 559, 590, 617, 701
FriOI GRGCYC 3 cut(s) 180, 908, 1302
Fsp4HI GCNGC 4 cut(s) 288, 1365, 1410, 1473
FspBI CTAG 5 cut(s) 113, 704, 1095, 1571, 1633
FspI TGCGCA 1 cut(s) 1214
GlaI GCGC 3 cut(s) 924, 937, 1214
GluI GCNGC 4 cut(s) 288, 1365, 1410, 1473
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 2 cut(s) 922, 1454
HaeII RGCGCY 1 cut(s) 926
HapII CCGG 7 cut(s) 264, 372, 390, 402, 777, 1280, 1616
HgaI GACGC 4 cut(s) 867, 927, 1134, 1257
HhaI GCGC 3 cut(s) 925, 938, 1215
Hin1I GRCGYC 2 cut(s) 1145, 1268
Hin6I GCGC 3 cut(s) 923, 936, 1213
HinP1I GCGC 3 cut(s) 923, 936, 1213
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 414, 533, 597
HpaII CCGG 7 cut(s) 264, 372, 390, 402, 777, 1280, 1616
HphI GGTGA 3 cut(s) 193, 361, 661
Hpy166II GTNNAC 7 cut(s) 237, 712, 739, 1092, 1236, 1349, 1630
Hpy188I TCNGA 6 cut(s) 154, 596, 930, 1140, 1208, 1243
Hpy188III TCNNGA 9 cut(s) 13, 336, 746, 802, 973, 987, 1039, 1201, 1303
Hpy8I GTNNAC 7 cut(s) 237, 712, 739, 1092, 1236, 1349, 1630
Hpy99I CGWCG 4 cut(s) 734, 883, 943, 1273
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 7 cut(s) 208, 234, 743, 847, 875, 1024, 1324
HpyCH4IV ACGT 3 cut(s) 729, 1218, 1238
HpyCH4V TGCA 6 cut(s) 362, 501, 770, 1004, 1157, 1349
HpyF10VI GCNNNNNNNGC 8 cut(s) 175, 425, 434, 1010, 1142, 1297, 1449, 1544
HpyF3I CTNAG 3 cut(s) 593, 653, 686
HpySE526I ACGT 3 cut(s) 729, 1218, 1238
Hsp92I GRCGYC 2 cut(s) 1145, 1268
HspAI GCGC 3 cut(s) 923, 936, 1213
Ksp22I TGATCA 1 cut(s) 1243
Kzo9I GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
LmnI GCTCC 3 cut(s) 166, 657, 903
Lsp1109I GCAGC 2 cut(s) 299, 1351
LweI GCATC 1 cut(s) 6
MaeI CTAG 5 cut(s) 113, 704, 1095, 1571, 1633
MaeII ACGT 3 cut(s) 729, 1218, 1238
MaeIII GTNAC 4 cut(s) 181, 440, 456, 667
MalI GATC 8 cut(s) 101, 120, 257, 971, 1037, 1205, 1245, 1496
MboI GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
MboII GAAGA 8 cut(s) 128, 170, 173, 443, 803, 908, 1592, 1613
MhlI GDGCHC 5 cut(s) 180, 439, 908, 1302, 1351
MlsI TGGCCA 3 cut(s) 555, 837, 1019
MluCI AATT 3 cut(s) 222, 645, 850
MluNI TGGCCA 3 cut(s) 555, 837, 1019
MmeI TCCRAC 2 cut(s) 132, 163
Mox20I TGGCCA 3 cut(s) 555, 837, 1019
MroXI GAANNNNTTC 1 cut(s) 418
MscI TGGCCA 3 cut(s) 555, 837, 1019
MseI TTAA 3 cut(s) 225, 272, 642
MslI CAYNNNNRTG 6 cut(s) 14, 206, 251, 296, 1162, 1502
Msp20I TGGCCA 3 cut(s) 555, 837, 1019
MspI CCGG 7 cut(s) 264, 372, 390, 402, 777, 1280, 1616
MspR9I CCNGG 3 cut(s) 403, 758, 1082
Mva1269I GAATGC 1 cut(s) 1215
MvaI CCWGG 2 cut(s) 758, 1082
MvnI CGCG 1 cut(s) 938
MwoI GCNNNNNNNGC 8 cut(s) 175, 425, 434, 1010, 1142, 1297, 1449, 1544
NciI CCSGG 1 cut(s) 403
NcoI CCATGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 1549
NdeII GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
NheI GCTAGC 1 cut(s) 703
NlaIV GGNNCC 3 cut(s) 659, 905, 1117
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 2 cut(s) 456, 667
NsbI TGCGCA 1 cut(s) 1214
NspI RCATGY 3 cut(s) 505, 1167, 1563
NspV TTCGAA 2 cut(s) 531, 1516
OliI CACNNNNGTG 1 cut(s) 206
PaeI GCATGC 1 cut(s) 505
PagI TCATGA 3 cut(s) 801, 972, 1200
PciI ACATGT 1 cut(s) 1559
PcsI WCGNNNNNNNCGW 1 cut(s) 1265
PctI GAATGC 1 cut(s) 1215
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 414, 533, 597
PkrI GCNGC 4 cut(s) 289, 1366, 1411, 1474
PscI ACATGT 1 cut(s) 1559
PshAI GACNNNNGTC 1 cut(s) 1322
Psp124BI GAGCTC 1 cut(s) 1302
Psp1406I AACGTT 1 cut(s) 1218
Psp6I CCWGG 2 cut(s) 756, 1080
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 2 cut(s) 756, 1080
PspN4I GGNNCC 3 cut(s) 659, 905, 1117
PspPI GGNCC 5 cut(s) 109, 1116, 1411, 1450, 1474
RsaI GTAC 3 cut(s) 236, 1370, 1554
RsaNI GTAC 3 cut(s) 235, 1369, 1553
RseI CAYNNNNRTG 6 cut(s) 14, 206, 251, 296, 1162, 1502
SacI GAGCTC 1 cut(s) 1302
SalI GTCGAC 1 cut(s) 1090
SaqAI TTAA 3 cut(s) 225, 272, 642
SatI GCNGC 4 cut(s) 288, 1365, 1410, 1473
Sau3AI GATC 8 cut(s) 99, 118, 255, 969, 1035, 1203, 1243, 1494
Sau96I GGNCC 5 cut(s) 109, 1116, 1411, 1450, 1474
ScrFI CCNGG 3 cut(s) 403, 758, 1082
SduI GDGCHC 5 cut(s) 180, 439, 908, 1302, 1351
SfaNI GCATC 1 cut(s) 6
SfcI CTRYAG 2 cut(s) 467, 1149
SfuI TTCGAA 2 cut(s) 531, 1516
SmiMI CAYNNNNRTG 6 cut(s) 14, 206, 251, 296, 1162, 1502
SphI GCATGC 1 cut(s) 505
Sse9I AATT 3 cut(s) 222, 645, 850
SsiI CCGC 4 cut(s) 82, 1047, 1409, 1472
SspMI CTAG 5 cut(s) 113, 704, 1095, 1571, 1633
SstI GAGCTC 1 cut(s) 1302
StyD4I CCNGG 3 cut(s) 401, 756, 1080
StyI CCWWGG 2 cut(s) 146, 751
TaaI ACNGT 7 cut(s) 208, 234, 743, 847, 875, 1024, 1324
TaiI ACGT 3 cut(s) 732, 1221, 1241
TaqI TCGA 4 cut(s) 531, 1091, 1516, 1543
TaqII GACCGA 2 cut(s) 1141, 1261
TasI AATT 3 cut(s) 222, 645, 850
TatI WGTACW 2 cut(s) 234, 1552
TauI GCSGC 2 cut(s) 1412, 1475
TfiI GAWTC 3 cut(s) 414, 533, 597
Tru1I TTAA 3 cut(s) 225, 272, 642
Tru9I TTAA 3 cut(s) 225, 272, 642
TscAI CASTG 4 cut(s) 211, 237, 697, 1164
TseFI GTSAC 2 cut(s) 456, 667
TseI GCWGC 2 cut(s) 287, 1364
Tsp45I GTSAC 2 cut(s) 456, 667
TspDTI ATGAA 5 cut(s) 295, 373, 909, 1189, 1602
TspGWI ACGGA 1 cut(s) 1535
TspRI CASTG 4 cut(s) 211, 237, 697, 1164
VneI GTGCAC 1 cut(s) 1347
XapI RAATTY 2 cut(s) 645, 850
XceI RCATGY 3 cut(s) 505, 1167, 1563
XcmI CCANNNNNNNNNTGG 3 cut(s) 304, 916, 1258
XmiI GTMKAC 1 cut(s) 1091
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 5 cut(s) 113, 704, 1095, 1571, 1633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.