ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 110 |
| AccB1I | GGYRCC | 1 cut(s) | 328 |
| AciI | CCGC | 1 cut(s) | 451 |
| AcsI | RAATTY | 2 cut(s) | 79, 577 |
| AfaI | GTAC | 1 cut(s) | 61 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 553 |
| AgsI | TTSAA | 5 cut(s) | 250, 257, 272, 425, 431 |
| AluBI | AGCT | 1 cut(s) | 260 |
| AluI | AGCT | 1 cut(s) | 260 |
| Alw26I | GTCTC | 3 cut(s) | 296, 652, 697 |
| AoxI | GGCC | 1 cut(s) | 447 |
| ApoI | RAATTY | 2 cut(s) | 79, 577 |
| AspS9I | GGNCC | 1 cut(s) | 448 |
| AsuC2I | CCSGG | 1 cut(s) | 107 |
| AsuHPI | GGTGA | 1 cut(s) | 152 |
| BanI | GGYRCC | 1 cut(s) | 328 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 147, 179 |
| BccI | CCATC | 3 cut(s) | 249, 439, 599 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcnI | CCSGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 3 cut(s) | 296, 652, 697 |
| BglII | AGATCT | 2 cut(s) | 497, 688 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| BmgT120I | GGNCC | 1 cut(s) | 448 |
| BmiI | GGNNCC | 2 cut(s) | 216, 330 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmrI | ACTGGG | 1 cut(s) | 333 |
| BmsI | GCATC | 1 cut(s) | 616 |
| BmuI | ACTGGG | 1 cut(s) | 333 |
| BpuEI | CTTGAG | 2 cut(s) | 456, 722 |
| BpuMI | CCSGG | 1 cut(s) | 107 |
| Bsa29I | ATCGAT | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 2 cut(s) | 291, 414 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 553 |
| Bse1I | ACTGG | 2 cut(s) | 328, 537 |
| Bse3DI | GCAATG | 1 cut(s) | 515 |
| BseCI | ATCGAT | 1 cut(s) | 244 |
| BseDI | CCNNGG | 2 cut(s) | 291, 414 |
| BseGI | GGATG | 4 cut(s) | 186, 414, 424, 610 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 553 |
| BseMI | GCAATG | 1 cut(s) | 515 |
| BseNI | ACTGG | 2 cut(s) | 328, 537 |
| BshFI | GGCC | 1 cut(s) | 449 |
| BshNI | GGYRCC | 1 cut(s) | 328 |
| BshVI | ATCGAT | 1 cut(s) | 244 |
| BsiSI | CCGG | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 553 |
| BsmAI | GTCTC | 3 cut(s) | 296, 652, 697 |
| BsmI | GAATGC | 1 cut(s) | 403 |
| BsnI | GGCC | 1 cut(s) | 449 |
| Bsp143I | GATC | 4 cut(s) | 181, 497, 526, 688 |
| Bsp19I | CCATGG | 1 cut(s) | 291 |
| BspACI | CCGC | 1 cut(s) | 451 |
| BspANI | GGCC | 1 cut(s) | 449 |
| BspDI | ATCGAT | 1 cut(s) | 244 |
| BspLI | GGNNCC | 2 cut(s) | 216, 330 |
| BspT107I | GGYRCC | 1 cut(s) | 328 |
| BsrDI | GCAATG | 1 cut(s) | 515 |
| BsrI | ACTGG | 2 cut(s) | 328, 537 |
| BssECI | CCNNGG | 2 cut(s) | 291, 414 |
| BssMI | GATC | 4 cut(s) | 181, 497, 526, 688 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 4 cut(s) | 198, 214, 438, 551 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 463 |
| BstC8I | GCNNGC | 3 cut(s) | 208, 451, 455 |
| BstDEI | CTNAG | 2 cut(s) | 63, 501 |
| BstDSI | CCRYGG | 1 cut(s) | 291 |
| BstF5I | GGATG | 4 cut(s) | 186, 414, 424, 610 |
| BstKTI | GATC | 4 cut(s) | 184, 500, 529, 691 |
| BstMAI | GTCTC | 3 cut(s) | 296, 652, 697 |
| BstMBI | GATC | 4 cut(s) | 181, 497, 526, 688 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 463 |
| BstNSI | RCATGY | 1 cut(s) | 206 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstX2I | RGATCY | 2 cut(s) | 497, 688 |
| BstYI | RGATCY | 2 cut(s) | 497, 688 |
| Bsu15I | ATCGAT | 1 cut(s) | 244 |
| BsuRI | GGCC | 1 cut(s) | 449 |
| BsuTUI | ATCGAT | 1 cut(s) | 244 |
| BtgI | CCRYGG | 1 cut(s) | 291 |
| BtsCI | GGATG | 4 cut(s) | 186, 414, 424, 610 |
| BtsI | GCAGTG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 3 cut(s) | 208, 451, 455 |
| Cfr13I | GGNCC | 1 cut(s) | 448 |
| ClaI | ATCGAT | 1 cut(s) | 244 |
| Csp6I | GTAC | 1 cut(s) | 60 |
| CviAII | CATG | 5 cut(s) | 72, 126, 203, 292, 673 |
| CviJI | RGCY | 8 cut(s) | 20, 110, 260, 268, 449, 514, 677, 697 |
| CviKI_1 | RGCY | 8 cut(s) | 20, 110, 260, 268, 449, 514, 677, 697 |
| CviQI | GTAC | 1 cut(s) | 60 |
| DdeI | CTNAG | 2 cut(s) | 63, 501 |
| DpnI | GATC | 4 cut(s) | 183, 499, 528, 690 |
| DpnII | GATC | 4 cut(s) | 181, 497, 526, 688 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 110 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 110 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| EcoRI | GAATTC | 1 cut(s) | 79 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaeI | CATG | 5 cut(s) | 75, 129, 206, 295, 676 |
| FatI | CATG | 5 cut(s) | 71, 125, 202, 291, 672 |
| FauI | CCCGC | 1 cut(s) | 458 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| FokI | GGATG | 4 cut(s) | 173, 421, 431, 617 |
| HaeIII | GGCC | 1 cut(s) | 449 |
| HapII | CCGG | 1 cut(s) | 106 |
| Hin1II | CATG | 5 cut(s) | 75, 129, 206, 295, 676 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HinfI | GANTC | 3 cut(s) | 237, 246, 287 |
| HpaII | CCGG | 1 cut(s) | 106 |
| HphI | GGTGA | 1 cut(s) | 152 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 408, 682 |
| Hpy188III | TCNNGA | 4 cut(s) | 101, 473, 487, 739 |
| HpyAV | CCTTC | 2 cut(s) | 132, 173 |
| HpyCH4III | ACNGT | 4 cut(s) | 198, 214, 438, 551 |
| HpyCH4V | TGCA | 4 cut(s) | 206, 364, 457, 508 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 463 |
| HpyF3I | CTNAG | 2 cut(s) | 63, 501 |
| Hsp92II | CATG | 5 cut(s) | 75, 129, 206, 295, 676 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| Kzo9I | GATC | 4 cut(s) | 181, 497, 526, 688 |
| LpnPI | CCDG | 7 cut(s) | 8, 41, 119, 291, 309, 472, 550 |
| LweI | GCATC | 1 cut(s) | 616 |
| MaeIII | GTNAC | 4 cut(s) | 173, 198, 319, 343 |
| MalI | GATC | 4 cut(s) | 183, 499, 528, 690 |
| MboI | GATC | 4 cut(s) | 181, 497, 526, 688 |
| MboII | GAAGA | 4 cut(s) | 89, 488, 535, 632 |
| MflI | RGATCY | 2 cut(s) | 497, 688 |
| MluCI | AATT | 7 cut(s) | 79, 156, 219, 577, 582, 610, 642 |
| MnlI | CCTC | 6 cut(s) | 10, 177, 409, 514, 595, 708 |
| MseI | TTAA | 2 cut(s) | 581, 585 |
| MslI | CAYNNNNRTG | 1 cut(s) | 371 |
| MspI | CCGG | 1 cut(s) | 106 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| Mva1269I | GAATGC | 1 cut(s) | 403 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 463 |
| NciI | CCSGG | 1 cut(s) | 107 |
| NcoI | CCATGG | 1 cut(s) | 291 |
| NdeII | GATC | 4 cut(s) | 181, 497, 526, 688 |
| NlaIII | CATG | 5 cut(s) | 75, 129, 206, 295, 676 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 330 |
| NmuCI | GTSAC | 1 cut(s) | 173 |
| NspI | RCATGY | 1 cut(s) | 206 |
| PacI | TTAATTAA | 1 cut(s) | 585 |
| PctI | GAATGC | 1 cut(s) | 403 |
| PfeI | GAWTC | 3 cut(s) | 237, 246, 287 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 330 |
| PspPI | GGNCC | 1 cut(s) | 448 |
| PsuI | RGATCY | 2 cut(s) | 497, 688 |
| RsaI | GTAC | 1 cut(s) | 61 |
| RsaNI | GTAC | 1 cut(s) | 60 |
| RseI | CAYNNNNRTG | 1 cut(s) | 371 |
| SaqAI | TTAA | 2 cut(s) | 581, 585 |
| Sau3AI | GATC | 4 cut(s) | 181, 497, 526, 688 |
| Sau96I | GGNCC | 1 cut(s) | 448 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SetI | ASST | 7 cut(s) | 11, 52, 165, 262, 464, 507, 729 |
| SfaNI | GCATC | 1 cut(s) | 616 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 2 cut(s) | 471, 737 |
| SmoI | CTYRAG | 2 cut(s) | 471, 737 |
| Sse9I | AATT | 7 cut(s) | 79, 156, 219, 577, 582, 610, 642 |
| SsiI | CCGC | 1 cut(s) | 451 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 4 cut(s) | 198, 214, 438, 551 |
| TaqI | TCGA | 1 cut(s) | 244 |
| TaqII | GACCGA | 1 cut(s) | 428 |
| TasI | AATT | 7 cut(s) | 79, 156, 219, 577, 582, 610, 642 |
| TfiI | GAWTC | 3 cut(s) | 237, 246, 287 |
| Tru1I | TTAA | 2 cut(s) | 581, 585 |
| Tru9I | TTAA | 2 cut(s) | 581, 585 |
| TscAI | CASTG | 1 cut(s) | 564 |
| TseFI | GTSAC | 1 cut(s) | 173 |
| Tsp45I | GTSAC | 1 cut(s) | 173 |
| TspDTI | ATGAA | 2 cut(s) | 114, 661 |
| TspGWI | ACGGA | 1 cut(s) | 244 |
| TspRI | CASTG | 1 cut(s) | 564 |
| XapI | RAATTY | 2 cut(s) | 79, 577 |
| XceI | RCATGY | 1 cut(s) | 206 |