ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 14 - 154 | 2.1e-08 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 598 |
| Acc36I | ACCTGC | 1 cut(s) | 597 |
| AccBSI | CCGCTC | 1 cut(s) | 225 |
| AciI | CCGC | 4 cut(s) | 203, 225, 1113, 1216 |
| AclI | AACGTT | 1 cut(s) | 514 |
| AclWI | GGATC | 2 cut(s) | 136, 699 |
| AcoI | YGGCCR | 1 cut(s) | 355 |
| AcsI | RAATTY | 1 cut(s) | 867 |
| AfaI | GTAC | 1 cut(s) | 264 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 151, 178, 475, 584, 686, 727, 744, 1231 |
| AgsI | TTSAA | 8 cut(s) | 276, 451, 463, 551, 853, 1021, 1039, 1094 |
| AjnI | CCWGG | 2 cut(s) | 577, 1184 |
| AluBI | AGCT | 5 cut(s) | 424, 743, 1005, 1016, 1097 |
| AluI | AGCT | 5 cut(s) | 424, 743, 1005, 1016, 1097 |
| Alw26I | GTCTC | 2 cut(s) | 128, 1144 |
| AlwI | GGATC | 2 cut(s) | 136, 699 |
| Ama87I | CYCGRG | 1 cut(s) | 1132 |
| AoxI | GGCC | 4 cut(s) | 355, 502, 939, 1189 |
| ApeKI | GCWGC | 8 cut(s) | 71, 394, 397, 421, 603, 862, 901, 1119 |
| ApoI | RAATTY | 1 cut(s) | 867 |
| AspLEI | GCGC | 3 cut(s) | 90, 378, 599 |
| AspS9I | GGNCC | 5 cut(s) | 34, 940, 1189, 1222, 1234 |
| AsuC2I | CCSGG | 2 cut(s) | 1133, 1134 |
| AsuHPI | GGTGA | 3 cut(s) | 497, 560, 567 |
| AvaI | CYCGRG | 1 cut(s) | 1132 |
| AvaII | GGWCC | 3 cut(s) | 34, 1222, 1234 |
| BalI | TGGCCA | 1 cut(s) | 357 |
| BauI | CACGAG | 1 cut(s) | 40 |
| BbsI | GAAGAC | 1 cut(s) | 1079 |
| BbvI | GCAGC | 8 cut(s) | 83, 381, 384, 433, 615, 874, 913, 1106 |
| BccI | CCATC | 6 cut(s) | 180, 245, 327, 366, 830, 1022 |
| BceAI | ACGGC | 2 cut(s) | 36, 75 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 851, 885 |
| BciT130I | CCWGG | 2 cut(s) | 579, 1186 |
| BciVI | GTATCC | 1 cut(s) | 1200 |
| BcnI | CCSGG | 2 cut(s) | 1133, 1134 |
| BcoDI | GTCTC | 2 cut(s) | 128, 1144 |
| BfaI | CTAG | 6 cut(s) | 660, 710, 744, 1025, 1143, 1149 |
| BfoI | RGCGCY | 1 cut(s) | 379 |
| BfuAI | ACCTGC | 1 cut(s) | 597 |
| BfuI | GTATCC | 1 cut(s) | 1200 |
| BisI | GCNGC | 8 cut(s) | 72, 395, 398, 422, 604, 863, 902, 1120 |
| BlsI | GCNGC | 8 cut(s) | 73, 396, 399, 423, 605, 864, 903, 1121 |
| Bme1390I | CCNGG | 4 cut(s) | 579, 1133, 1134, 1186 |
| Bme18I | GGWCC | 3 cut(s) | 34, 1222, 1234 |
| BmeT110I | CYCGRG | 1 cut(s) | 1132 |
| BmgT120I | GGNCC | 5 cut(s) | 34, 940, 1189, 1222, 1234 |
| BmiI | GGNNCC | 2 cut(s) | 36, 1190 |
| BmrFI | CCNGG | 4 cut(s) | 579, 1133, 1134, 1186 |
| BmsI | GCATC | 7 cut(s) | 58, 66, 514, 584, 1100, 1106, 1266 |
| BpiI | GAAGAC | 1 cut(s) | 1079 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 23, 55 |
| BpmI | CTGGAG | 1 cut(s) | 197 |
| BpuMI | CCSGG | 2 cut(s) | 1133, 1134 |
| BsaBI | GATNNNNATC | 1 cut(s) | 990 |
| BsaJI | CCNNGG | 4 cut(s) | 52, 685, 1132, 1185 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 151, 178, 475, 584, 686, 727, 744, 1231 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| Bse8I | GATNNNNATC | 1 cut(s) | 990 |
| BseBI | CCWGG | 2 cut(s) | 579, 1186 |
| BseDI | CCNNGG | 4 cut(s) | 52, 685, 1132, 1185 |
| BseGI | GGATG | 8 cut(s) | 192, 256, 265, 358, 529, 599, 1115, 1121 |
| BseJI | GATNNNNATC | 1 cut(s) | 990 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 151, 178, 475, 584, 686, 727, 744, 1231 |
| BseMII | CTCAG | 4 cut(s) | 225, 552, 792, 1236 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseRI | GAGGAG | 1 cut(s) | 633 |
| BseXI | GCAGC | 8 cut(s) | 83, 381, 384, 433, 615, 874, 913, 1106 |
| BseYI | CCCAGC | 1 cut(s) | 819 |
| BsgI | GTGCAG | 2 cut(s) | 440, 881 |
| BshFI | GGCC | 4 cut(s) | 357, 504, 941, 1191 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1132 |
| BsiSI | CCGG | 2 cut(s) | 113, 1133 |
| BslFI | GGGAC | 2 cut(s) | 20, 167 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 151, 178, 475, 584, 686, 727, 744, 1231 |
| BsmAI | GTCTC | 2 cut(s) | 128, 1144 |
| BsmFI | GGGAC | 2 cut(s) | 20, 167 |
| BsnI | GGCC | 4 cut(s) | 357, 504, 941, 1191 |
| BsoBI | CYCGRG | 1 cut(s) | 1132 |
| Bsp143I | GATC | 3 cut(s) | 141, 691, 961 |
| Bsp19I | CCATGG | 1 cut(s) | 685 |
| BspACI | CCGC | 4 cut(s) | 203, 225, 1113, 1216 |
| BspANI | GGCC | 4 cut(s) | 357, 504, 941, 1191 |
| BspCNI | CTCAG | 4 cut(s) | 224, 551, 793, 1237 |
| BspHI | TCATGA | 1 cut(s) | 307 |
| BspLI | GGNNCC | 2 cut(s) | 36, 1190 |
| BspMI | ACCTGC | 1 cut(s) | 597 |
| BspPI | GGATC | 2 cut(s) | 136, 699 |
| BsrBI | CCGCTC | 1 cut(s) | 225 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 4 cut(s) | 52, 685, 1132, 1185 |
| BssMI | GATC | 3 cut(s) | 141, 691, 961 |
| BssSI | CACGAG | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 1 cut(s) | 685 |
| Bst2BI | CACGAG | 1 cut(s) | 40 |
| Bst2UI | CCWGG | 2 cut(s) | 579, 1186 |
| Bst4CI | ACNGT | 3 cut(s) | 197, 794, 859 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 3 cut(s) | 81, 601, 1050 |
| BstDEI | CTNAG | 5 cut(s) | 138, 211, 538, 801, 1245 |
| BstDSI | CCRYGG | 2 cut(s) | 52, 685 |
| BstEII | GGTNACC | 1 cut(s) | 566 |
| BstF5I | GGATG | 8 cut(s) | 192, 256, 265, 358, 529, 599, 1115, 1121 |
| BstH2I | RGCGCY | 1 cut(s) | 379 |
| BstHHI | GCGC | 3 cut(s) | 90, 378, 599 |
| BstKTI | GATC | 3 cut(s) | 144, 694, 964 |
| BstMAI | GTCTC | 2 cut(s) | 128, 1144 |
| BstMBI | GATC | 3 cut(s) | 141, 691, 961 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 80, 85, 603, 1119, 1128 |
| BstNI | CCWGG | 2 cut(s) | 579, 1186 |
| BstNSI | RCATGY | 2 cut(s) | 603, 1052 |
| BstPI | GGTNACC | 1 cut(s) | 566 |
| BstSCI | CCNGG | 4 cut(s) | 577, 1131, 1132, 1184 |
| BstV1I | GCAGC | 8 cut(s) | 83, 381, 384, 433, 615, 874, 913, 1106 |
| BstV2I | GAAGAC | 1 cut(s) | 1079 |
| BstX2I | RGATCY | 1 cut(s) | 141 |
| BstYI | RGATCY | 1 cut(s) | 141 |
| BsuI | GTATCC | 1 cut(s) | 1200 |
| BsuRI | GGCC | 4 cut(s) | 357, 504, 941, 1191 |
| BtgI | CCRYGG | 2 cut(s) | 52, 685 |
| BtsCI | GGATG | 8 cut(s) | 192, 256, 265, 358, 529, 599, 1115, 1121 |
| BtsI | GCAGTG | 2 cut(s) | 81, 366 |
| BtsIMutI | CAGTG | 2 cut(s) | 81, 366 |
| BveI | ACCTGC | 1 cut(s) | 597 |
| Cac8I | GCNNGC | 3 cut(s) | 81, 601, 1050 |
| CciI | TCATGA | 1 cut(s) | 307 |
| CfoI | GCGC | 3 cut(s) | 90, 378, 599 |
| Cfr13I | GGNCC | 5 cut(s) | 34, 940, 1189, 1222, 1234 |
| Cfr9I | CCCGGG | 1 cut(s) | 1132 |
| CseI | GACGC | 2 cut(s) | 615, 790 |
| Csp6I | GTAC | 1 cut(s) | 263 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 368, 403 |
| CviAII | CATG | 9 cut(s) | 160, 308, 600, 636, 686, 959, 1049, 1219, 1226 |
| CviQI | GTAC | 1 cut(s) | 263 |
| DdeI | CTNAG | 5 cut(s) | 138, 211, 538, 801, 1245 |
| DpnI | GATC | 3 cut(s) | 143, 693, 963 |
| DpnII | GATC | 3 cut(s) | 141, 691, 961 |
| EaeI | YGGCCR | 1 cut(s) | 355 |
| Eco130I | CCWWGG | 1 cut(s) | 685 |
| Eco47I | GGWCC | 3 cut(s) | 34, 1222, 1234 |
| Eco88I | CYCGRG | 1 cut(s) | 1132 |
| Eco91I | GGTNACC | 1 cut(s) | 566 |
| EcoO109I | RGGNCCY | 2 cut(s) | 34, 940 |
| EcoO65I | GGTNACC | 1 cut(s) | 566 |
| EcoRII | CCWGG | 2 cut(s) | 577, 1184 |
| EcoT14I | CCWWGG | 1 cut(s) | 685 |
| ErhI | CCWWGG | 1 cut(s) | 685 |
| FaeI | CATG | 9 cut(s) | 163, 311, 603, 639, 689, 962, 1052, 1222, 1229 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 101, 133 |
| FaqI | GGGAC | 2 cut(s) | 20, 167 |
| FatI | CATG | 9 cut(s) | 159, 307, 599, 635, 685, 958, 1048, 1218, 1225 |
| FauNDI | CATATG | 1 cut(s) | 1105 |
| Fnu4HI | GCNGC | 8 cut(s) | 72, 395, 398, 422, 604, 863, 902, 1120 |
| FokI | GGATG | 8 cut(s) | 199, 263, 272, 345, 536, 606, 1122, 1128 |
| Fsp4HI | GCNGC | 8 cut(s) | 72, 395, 398, 422, 604, 863, 902, 1120 |
| FspAI | RTGCGCAY | 1 cut(s) | 598 |
| FspBI | CTAG | 6 cut(s) | 660, 710, 744, 1025, 1143, 1149 |
| FspI | TGCGCA | 1 cut(s) | 598 |
| GlaI | GCGC | 3 cut(s) | 89, 377, 598 |
| GluI | GCNGC | 8 cut(s) | 72, 395, 398, 422, 604, 863, 902, 1120 |
| GsaI | CCCAGC | 1 cut(s) | 823 |
| GsuI | CTGGAG | 1 cut(s) | 197 |
| HaeII | RGCGCY | 1 cut(s) | 379 |
| HaeIII | GGCC | 4 cut(s) | 357, 504, 941, 1191 |
| HapII | CCGG | 2 cut(s) | 113, 1133 |
| HgaI | GACGC | 2 cut(s) | 615, 790 |
| HhaI | GCGC | 3 cut(s) | 90, 378, 599 |
| Hin1II | CATG | 9 cut(s) | 163, 311, 603, 639, 689, 962, 1052, 1222, 1229 |
| Hin6I | GCGC | 3 cut(s) | 88, 376, 597 |
| HinP1I | GCGC | 3 cut(s) | 88, 376, 597 |
| HindIII | AAGCTT | 1 cut(s) | 1095 |
| HinfI | GANTC | 1 cut(s) | 1137 |
| HpaII | CCGG | 2 cut(s) | 113, 1133 |
| HphI | GGTGA | 3 cut(s) | 497, 560, 567 |
| Hpy188I | TCNGA | 9 cut(s) | 541, 722, 764, 802, 835, 985, 1159, 1177, 1292 |
| Hpy188III | TCNNGA | 5 cut(s) | 176, 308, 653, 812, 1143 |
| Hpy99I | CGWCG | 2 cut(s) | 416, 631 |
| HpyAV | CCTTC | 6 cut(s) | 19, 469, 473, 494, 576, 717 |
| HpyCH4III | ACNGT | 3 cut(s) | 197, 794, 859 |
| HpyCH4IV | ACGT | 2 cut(s) | 514, 826 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 80, 85, 603, 1119, 1128 |
| HpyF3I | CTNAG | 5 cut(s) | 138, 211, 538, 801, 1245 |
| HpySE526I | ACGT | 2 cut(s) | 514, 826 |
| Hsp92II | CATG | 9 cut(s) | 163, 311, 603, 639, 689, 962, 1052, 1222, 1229 |
| HspAI | GCGC | 3 cut(s) | 88, 376, 597 |
| Kzo9I | GATC | 3 cut(s) | 141, 691, 961 |
| LmnI | GCTCC | 1 cut(s) | 1218 |
| Lsp1109I | GCAGC | 8 cut(s) | 83, 381, 384, 433, 615, 874, 913, 1106 |
| LweI | GCATC | 7 cut(s) | 58, 66, 514, 584, 1100, 1106, 1266 |
| MaeI | CTAG | 6 cut(s) | 660, 710, 744, 1025, 1143, 1149 |
| MaeII | ACGT | 2 cut(s) | 514, 826 |
| MaeIII | GTNAC | 2 cut(s) | 566, 872 |
| MalI | GATC | 3 cut(s) | 143, 693, 963 |
| MbiI | CCGCTC | 1 cut(s) | 225 |
| MboI | GATC | 3 cut(s) | 141, 691, 961 |
| MboII | GAAGA | 4 cut(s) | 273, 965, 1084, 1092 |
| MflI | RGATCY | 1 cut(s) | 141 |
| MlsI | TGGCCA | 1 cut(s) | 357 |
| MluCI | AATT | 6 cut(s) | 46, 551, 758, 867, 933, 1254 |
| MluNI | TGGCCA | 1 cut(s) | 357 |
| MlyI | GAGTC | 1 cut(s) | 1146 |
| MmeI | TCCRAC | 1 cut(s) | 591 |
| Mox20I | TGGCCA | 1 cut(s) | 357 |
| MscI | TGGCCA | 1 cut(s) | 357 |
| MseI | TTAA | 1 cut(s) | 990 |
| MslI | CAYNNNNRTG | 2 cut(s) | 294, 1108 |
| Msp20I | TGGCCA | 1 cut(s) | 357 |
| MspI | CCGG | 2 cut(s) | 113, 1133 |
| MspR9I | CCNGG | 4 cut(s) | 579, 1133, 1134, 1186 |
| MvaI | CCWGG | 2 cut(s) | 579, 1186 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 80, 85, 603, 1119, 1128 |
| NciI | CCSGG | 2 cut(s) | 1133, 1134 |
| NcoI | CCATGG | 1 cut(s) | 685 |
| NdeI | CATATG | 1 cut(s) | 1105 |
| NdeII | GATC | 3 cut(s) | 141, 691, 961 |
| NlaIII | CATG | 9 cut(s) | 163, 311, 603, 639, 689, 962, 1052, 1222, 1229 |
| NlaIV | GGNNCC | 2 cut(s) | 36, 1190 |
| NmeAIII | GCCGAG | 1 cut(s) | 397 |
| NmuCI | GTSAC | 1 cut(s) | 566 |
| NsbI | TGCGCA | 1 cut(s) | 598 |
| NspI | RCATGY | 2 cut(s) | 603, 1052 |
| PaeI | GCATGC | 2 cut(s) | 603, 1052 |
| PagI | TCATGA | 1 cut(s) | 307 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 760 |
| PkrI | GCNGC | 8 cut(s) | 73, 396, 399, 423, 605, 864, 903, 1121 |
| PleI | GAGTC | 1 cut(s) | 1145 |
| PpsI | GAGTC | 1 cut(s) | 1145 |
| PpuMI | RGGWCCY | 1 cut(s) | 34 |
| Psp1406I | AACGTT | 1 cut(s) | 514 |
| Psp5II | RGGWCCY | 1 cut(s) | 34 |
| Psp6I | CCWGG | 2 cut(s) | 577, 1184 |
| PspEI | GGTNACC | 1 cut(s) | 566 |
| PspFI | CCCAGC | 1 cut(s) | 819 |
| PspGI | CCWGG | 2 cut(s) | 577, 1184 |
| PspN4I | GGNNCC | 2 cut(s) | 36, 1190 |
| PspPI | GGNCC | 5 cut(s) | 34, 940, 1189, 1222, 1234 |
| PspPPI | RGGWCCY | 1 cut(s) | 34 |
| PsuI | RGATCY | 1 cut(s) | 141 |
| RsaI | GTAC | 1 cut(s) | 264 |
| RsaNI | GTAC | 1 cut(s) | 263 |
| RseI | CAYNNNNRTG | 2 cut(s) | 294, 1108 |
| SaqAI | TTAA | 1 cut(s) | 990 |
| SatI | GCNGC | 8 cut(s) | 72, 395, 398, 422, 604, 863, 902, 1120 |
| Sau3AI | GATC | 3 cut(s) | 141, 691, 961 |
| Sau96I | GGNCC | 5 cut(s) | 34, 940, 1189, 1222, 1234 |
| SchI | GAGTC | 1 cut(s) | 1146 |
| ScrFI | CCNGG | 4 cut(s) | 579, 1133, 1134, 1186 |
| SfaNI | GCATC | 7 cut(s) | 58, 66, 514, 584, 1100, 1106, 1266 |
| SinI | GGWCC | 3 cut(s) | 34, 1222, 1234 |
| SmaI | CCCGGG | 1 cut(s) | 1134 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 294, 1108 |
| SphI | GCATGC | 2 cut(s) | 603, 1052 |
| Sse9I | AATT | 6 cut(s) | 46, 551, 758, 867, 933, 1254 |
| SsiI | CCGC | 4 cut(s) | 203, 225, 1113, 1216 |
| SspMI | CTAG | 6 cut(s) | 660, 710, 744, 1025, 1143, 1149 |
| StyD4I | CCNGG | 4 cut(s) | 577, 1131, 1132, 1184 |
| StyI | CCWWGG | 1 cut(s) | 685 |
| TaaI | ACNGT | 3 cut(s) | 197, 794, 859 |
| TaiI | ACGT | 2 cut(s) | 517, 829 |
| TaqI | TCGA | 1 cut(s) | 754 |
| TaqII | GACCGA | 1 cut(s) | 554 |
| TasI | AATT | 6 cut(s) | 46, 551, 758, 867, 933, 1254 |
| Tru1I | TTAA | 1 cut(s) | 990 |
| Tru9I | TTAA | 1 cut(s) | 990 |
| TscAI | CASTG | 2 cut(s) | 81, 373 |
| TseFI | GTSAC | 1 cut(s) | 566 |
| TseI | GCWGC | 8 cut(s) | 71, 394, 397, 421, 603, 862, 901, 1119 |
| Tsp45I | GTSAC | 1 cut(s) | 566 |
| TspDTI | ATGAA | 7 cut(s) | 176, 206, 296, 324, 624, 1092, 1242 |
| TspMI | CCCGGG | 1 cut(s) | 1132 |
| TspRI | CASTG | 2 cut(s) | 81, 373 |
| VpaK11BI | GGWCC | 3 cut(s) | 34, 1222, 1234 |
| XapI | RAATTY | 1 cut(s) | 867 |
| XbaI | TCTAGA | 1 cut(s) | 1142 |
| XceI | RCATGY | 2 cut(s) | 603, 1052 |
| XmaI | CCCGGG | 1 cut(s) | 1132 |
| XspI | CTAG | 6 cut(s) | 660, 710, 744, 1025, 1143, 1149 |