ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 30 |
| Acc36I | ACCTGC | 1 cut(s) | 406 |
| AccI | GTMKAC | 1 cut(s) | 260 |
| AciI | CCGC | 4 cut(s) | 54, 61, 302, 413 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AfaI | GTAC | 1 cut(s) | 411 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 368, 472 |
| AgsI | TTSAA | 2 cut(s) | 217, 452 |
| AjiI | CACGTC | 1 cut(s) | 379 |
| AjnI | CCWGG | 2 cut(s) | 17, 317 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 227, 259 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| Alw26I | GTCTC | 3 cut(s) | 16, 366, 385 |
| Ama87I | CYCGRG | 1 cut(s) | 342 |
| ApeKI | GCWGC | 3 cut(s) | 109, 142, 338 |
| AspS9I | GGNCC | 2 cut(s) | 272, 463 |
| AsuHPI | GGTGA | 1 cut(s) | 140 |
| AvaI | CYCGRG | 1 cut(s) | 342 |
| AvaII | GGWCC | 2 cut(s) | 272, 463 |
| BbvI | GCAGC | 3 cut(s) | 96, 129, 350 |
| BccI | CCATC | 2 cut(s) | 22, 72 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 185, 219 |
| BciT130I | CCWGG | 2 cut(s) | 19, 319 |
| BclI | TGATCA | 1 cut(s) | 295 |
| BcoDI | GTCTC | 3 cut(s) | 16, 366, 385 |
| BfmI | CTRYAG | 1 cut(s) | 336 |
| BfuAI | ACCTGC | 1 cut(s) | 406 |
| BisI | GCNGC | 3 cut(s) | 110, 143, 339 |
| BlsI | GCNGC | 3 cut(s) | 111, 144, 340 |
| Bme1390I | CCNGG | 2 cut(s) | 19, 319 |
| Bme18I | GGWCC | 2 cut(s) | 272, 463 |
| BmeT110I | CYCGRG | 1 cut(s) | 342 |
| BmgBI | CACGTC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 2 cut(s) | 272, 463 |
| BmiI | GGNNCC | 2 cut(s) | 245, 464 |
| BmrFI | CCNGG | 2 cut(s) | 19, 319 |
| BmsI | GCATC | 2 cut(s) | 183, 478 |
| BpmI | CTGGAG | 2 cut(s) | 40, 413 |
| BsaI | GGTCTC | 1 cut(s) | 366 |
| BsaJI | CCNNGG | 3 cut(s) | 113, 153, 247 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 159, 189, 363, 393 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 368, 472 |
| Bse118I | RCCGGY | 1 cut(s) | 46 |
| BseBI | CCWGG | 2 cut(s) | 19, 319 |
| BseDI | CCNNGG | 3 cut(s) | 113, 153, 247 |
| BseGI | GGATG | 1 cut(s) | 214 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 368, 472 |
| BseRI | GAGGAG | 1 cut(s) | 183 |
| BseXI | GCAGC | 3 cut(s) | 96, 129, 350 |
| BsiHKCI | CYCGRG | 1 cut(s) | 342 |
| BsiSI | CCGG | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 368, 472 |
| BsmAI | GTCTC | 3 cut(s) | 16, 366, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| Bso31I | GGTCTC | 1 cut(s) | 366 |
| BsoBI | CYCGRG | 1 cut(s) | 342 |
| Bsp143I | GATC | 3 cut(s) | 226, 295, 396 |
| Bsp19I | CCATGG | 1 cut(s) | 247 |
| BspACI | CCGC | 4 cut(s) | 54, 61, 302, 413 |
| BspLI | GGNNCC | 2 cut(s) | 245, 464 |
| BspMAI | CTGCAG | 1 cut(s) | 340 |
| BspMI | ACCTGC | 1 cut(s) | 406 |
| BspTNI | GGTCTC | 1 cut(s) | 366 |
| BsrFI | RCCGGY | 1 cut(s) | 46 |
| BssAI | RCCGGY | 1 cut(s) | 46 |
| BssECI | CCNNGG | 3 cut(s) | 113, 153, 247 |
| BssMI | GATC | 3 cut(s) | 226, 295, 396 |
| BssNAI | GTATAC | 1 cut(s) | 261 |
| BssT1I | CCWWGG | 2 cut(s) | 113, 247 |
| Bst1107I | GTATAC | 1 cut(s) | 261 |
| Bst2UI | CCWGG | 2 cut(s) | 19, 319 |
| Bst4CI | ACNGT | 1 cut(s) | 201 |
| BstDEI | CTNAG | 1 cut(s) | 238 |
| BstDSI | CCRYGG | 1 cut(s) | 247 |
| BstEII | GGTNACC | 1 cut(s) | 49 |
| BstF5I | GGATG | 1 cut(s) | 214 |
| BstKTI | GATC | 3 cut(s) | 229, 298, 399 |
| BstMAI | GTCTC | 3 cut(s) | 16, 366, 385 |
| BstMBI | GATC | 3 cut(s) | 226, 295, 396 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 285 |
| BstNI | CCWGG | 2 cut(s) | 19, 319 |
| BstNSI | RCATGY | 1 cut(s) | 152 |
| BstPI | GGTNACC | 1 cut(s) | 49 |
| BstSCI | CCNGG | 2 cut(s) | 17, 317 |
| BstSFI | CTRYAG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 3 cut(s) | 96, 129, 350 |
| BstZ17I | GTATAC | 1 cut(s) | 261 |
| BtgI | CCRYGG | 1 cut(s) | 247 |
| BtrI | CACGTC | 1 cut(s) | 379 |
| BtsCI | GGATG | 1 cut(s) | 214 |
| BveI | ACCTGC | 1 cut(s) | 406 |
| Cfr10I | RCCGGY | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 2 cut(s) | 272, 463 |
| Csp6I | GTAC | 1 cut(s) | 410 |
| CviAII | CATG | 3 cut(s) | 149, 248, 280 |
| CviJI | RGCY | 5 cut(s) | 46, 98, 142, 341, 432 |
| CviKI_1 | RGCY | 5 cut(s) | 46, 98, 142, 341, 432 |
| CviQI | GTAC | 1 cut(s) | 410 |
| DdeI | CTNAG | 1 cut(s) | 238 |
| DpnI | GATC | 3 cut(s) | 228, 297, 398 |
| DpnII | GATC | 3 cut(s) | 226, 295, 396 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 30 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 30 |
| Eco130I | CCWWGG | 2 cut(s) | 113, 247 |
| Eco31I | GGTCTC | 1 cut(s) | 366 |
| Eco47I | GGWCC | 2 cut(s) | 272, 463 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| Eco88I | CYCGRG | 1 cut(s) | 342 |
| Eco91I | GGTNACC | 1 cut(s) | 49 |
| EcoO65I | GGTNACC | 1 cut(s) | 49 |
| EcoRII | CCWGG | 2 cut(s) | 17, 317 |
| EcoT14I | CCWWGG | 2 cut(s) | 113, 247 |
| ErhI | CCWWGG | 2 cut(s) | 113, 247 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 3 cut(s) | 152, 251, 283 |
| FaiI | YATR | 7 cut(s) | 39, 134, 150, 249, 261, 281, 329 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FatI | CATG | 3 cut(s) | 148, 247, 279 |
| FbaI | TGATCA | 1 cut(s) | 295 |
| FblI | GTMKAC | 1 cut(s) | 260 |
| Fnu4HI | GCNGC | 3 cut(s) | 110, 143, 339 |
| FokI | GGATG | 1 cut(s) | 221 |
| Fsp4HI | GCNGC | 3 cut(s) | 110, 143, 339 |
| GluI | GCNGC | 3 cut(s) | 110, 143, 339 |
| GsuI | CTGGAG | 2 cut(s) | 40, 413 |
| HapII | CCGG | 1 cut(s) | 47 |
| Hin1II | CATG | 3 cut(s) | 152, 251, 283 |
| HinfI | GANTC | 2 cut(s) | 76, 345 |
| HpaII | CCGG | 1 cut(s) | 47 |
| HphI | GGTGA | 1 cut(s) | 140 |
| Hpy166II | GTNNAC | 2 cut(s) | 235, 261 |
| Hpy188I | TCNGA | 5 cut(s) | 157, 192, 276, 325, 446 |
| Hpy188III | TCNNGA | 4 cut(s) | 206, 392, 421, 473 |
| Hpy8I | GTNNAC | 2 cut(s) | 235, 261 |
| HpyAV | CCTTC | 5 cut(s) | 154, 158, 324, 398, 421 |
| HpyCH4III | ACNGT | 1 cut(s) | 201 |
| HpyCH4IV | ACGT | 1 cut(s) | 378 |
| HpyCH4V | TGCA | 2 cut(s) | 196, 338 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 285 |
| HpyF3I | CTNAG | 1 cut(s) | 238 |
| HpySE526I | ACGT | 1 cut(s) | 378 |
| Hsp92II | CATG | 3 cut(s) | 152, 251, 283 |
| Ksp22I | TGATCA | 1 cut(s) | 295 |
| Kzo9I | GATC | 3 cut(s) | 226, 295, 396 |
| LmnI | GCTCC | 1 cut(s) | 9 |
| Lsp1109I | GCAGC | 3 cut(s) | 96, 129, 350 |
| LweI | GCATC | 2 cut(s) | 183, 478 |
| MaeII | ACGT | 1 cut(s) | 378 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 3 cut(s) | 228, 297, 398 |
| MboI | GATC | 3 cut(s) | 226, 295, 396 |
| MboII | GAAGA | 1 cut(s) | 436 |
| MfeI | CAATTG | 1 cut(s) | 12 |
| MluCI | AATT | 1 cut(s) | 12 |
| MlyI | GAGTC | 2 cut(s) | 70, 354 |
| MnlI | CCTC | 4 cut(s) | 115, 161, 163, 178 |
| MspI | CCGG | 1 cut(s) | 47 |
| MspR9I | CCNGG | 2 cut(s) | 19, 319 |
| MunI | CAATTG | 1 cut(s) | 12 |
| MvaI | CCWGG | 2 cut(s) | 19, 319 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 285 |
| NcoI | CCATGG | 1 cut(s) | 247 |
| NdeII | GATC | 3 cut(s) | 226, 295, 396 |
| NlaIII | CATG | 3 cut(s) | 152, 251, 283 |
| NlaIV | GGNNCC | 2 cut(s) | 245, 464 |
| NspI | RCATGY | 1 cut(s) | 152 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 375 |
| PflFI | GACNNNGTC | 1 cut(s) | 377 |
| PkrI | GCNGC | 3 cut(s) | 111, 144, 340 |
| PleI | GAGTC | 2 cut(s) | 70, 353 |
| PpsI | GAGTC | 2 cut(s) | 70, 353 |
| Psp6I | CCWGG | 2 cut(s) | 17, 317 |
| PspEI | GGTNACC | 1 cut(s) | 49 |
| PspGI | CCWGG | 2 cut(s) | 17, 317 |
| PspN4I | GGNNCC | 2 cut(s) | 245, 464 |
| PspPI | GGNCC | 2 cut(s) | 272, 463 |
| PstI | CTGCAG | 1 cut(s) | 340 |
| PsyI | GACNNNGTC | 1 cut(s) | 377 |
| RsaI | GTAC | 1 cut(s) | 411 |
| RsaNI | GTAC | 1 cut(s) | 410 |
| SatI | GCNGC | 3 cut(s) | 110, 143, 339 |
| Sau3AI | GATC | 3 cut(s) | 226, 295, 396 |
| Sau96I | GGNCC | 2 cut(s) | 272, 463 |
| SchI | GAGTC | 2 cut(s) | 70, 354 |
| ScrFI | CCNGG | 2 cut(s) | 19, 319 |
| SetI | ASST | 4 cut(s) | 90, 144, 381, 420 |
| SfaNI | GCATC | 2 cut(s) | 183, 478 |
| SfcI | CTRYAG | 1 cut(s) | 336 |
| SinI | GGWCC | 2 cut(s) | 272, 463 |
| Sse9I | AATT | 1 cut(s) | 12 |
| SsiI | CCGC | 4 cut(s) | 54, 61, 302, 413 |
| StyD4I | CCNGG | 2 cut(s) | 17, 317 |
| StyI | CCWWGG | 2 cut(s) | 113, 247 |
| TaaI | ACNGT | 1 cut(s) | 201 |
| TaiI | ACGT | 1 cut(s) | 381 |
| TasI | AATT | 1 cut(s) | 12 |
| TseI | GCWGC | 3 cut(s) | 109, 142, 338 |
| TspDTI | ATGAA | 1 cut(s) | 149 |
| TspGWI | ACGGA | 2 cut(s) | 246, 384 |
| Tth111I | GACNNNGTC | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 2 cut(s) | 272, 463 |
| XceI | RCATGY | 1 cut(s) | 152 |
| XmiI | GTMKAC | 1 cut(s) | 260 |