ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 593 |
| AccII | CGCG | 1 cut(s) | 340 |
| AciI | CCGC | 1 cut(s) | 845 |
| AclWI | GGATC | 4 cut(s) | 44, 70, 78, 115 |
| AcsI | RAATTY | 2 cut(s) | 432, 562 |
| AcuI | CTGAAG | 2 cut(s) | 86, 607 |
| AfaI | GTAC | 4 cut(s) | 253, 601, 831, 849 |
| AgsI | TTSAA | 3 cut(s) | 133, 142, 710 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 86, 118, 292, 324 |
| AluBI | AGCT | 2 cut(s) | 577, 868 |
| AluI | AGCT | 2 cut(s) | 577, 868 |
| Alw26I | GTCTC | 1 cut(s) | 563 |
| AlwI | GGATC | 4 cut(s) | 44, 70, 78, 115 |
| AoxI | GGCC | 2 cut(s) | 461, 541 |
| ApeKI | GCWGC | 3 cut(s) | 155, 865, 916 |
| ApoI | RAATTY | 2 cut(s) | 432, 562 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| AspA2I | CCTAGG | 1 cut(s) | 505 |
| AspLEI | GCGC | 2 cut(s) | 64, 342 |
| AspS9I | GGNCC | 3 cut(s) | 461, 542, 664 |
| AsuHPI | GGTGA | 1 cut(s) | 527 |
| AvaII | GGWCC | 1 cut(s) | 664 |
| AvrII | CCTAGG | 1 cut(s) | 505 |
| BbsI | GAAGAC | 2 cut(s) | 249, 784 |
| BbvI | GCAGC | 3 cut(s) | 142, 877, 928 |
| BccI | CCATC | 3 cut(s) | 132, 188, 313 |
| BceAI | ACGGC | 2 cut(s) | 589, 893 |
| BcoDI | GTCTC | 1 cut(s) | 563 |
| BfaI | CTAG | 2 cut(s) | 506, 812 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BglII | AGATCT | 1 cut(s) | 923 |
| BisI | GCNGC | 3 cut(s) | 156, 866, 917 |
| BlnI | CCTAGG | 1 cut(s) | 505 |
| BlsI | GCNGC | 3 cut(s) | 157, 867, 918 |
| Bme18I | GGWCC | 1 cut(s) | 664 |
| BmgT120I | GGNCC | 3 cut(s) | 461, 542, 664 |
| BmiI | GGNNCC | 3 cut(s) | 295, 462, 697 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BpiI | GAAGAC | 2 cut(s) | 249, 784 |
| Bpu10I | CCTNAGC | 1 cut(s) | 374 |
| BpuEI | CTTGAG | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 2 cut(s) | 404, 505 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 873, 903 |
| Bse1I | ACTGG | 2 cut(s) | 464, 697 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| BseDI | CCNNGG | 2 cut(s) | 404, 505 |
| BseGI | GGATG | 3 cut(s) | 10, 88, 505 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 2 cut(s) | 708, 831 |
| BseNI | ACTGG | 2 cut(s) | 464, 697 |
| BseXI | GCAGC | 3 cut(s) | 142, 877, 928 |
| BseYI | CCCAGC | 1 cut(s) | 211 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| Bsh1236I | CGCG | 1 cut(s) | 340 |
| BshFI | GGCC | 2 cut(s) | 463, 543 |
| BsmAI | GTCTC | 1 cut(s) | 563 |
| BsnI | GGCC | 2 cut(s) | 463, 543 |
| Bsp1407I | TGTACA | 1 cut(s) | 829 |
| Bsp143I | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| BspACI | CCGC | 1 cut(s) | 845 |
| BspANI | GGCC | 2 cut(s) | 463, 543 |
| BspCNI | CTCAG | 2 cut(s) | 709, 832 |
| BspFNI | CGCG | 1 cut(s) | 340 |
| BspHI | TCATGA | 1 cut(s) | 898 |
| BspLI | GGNNCC | 3 cut(s) | 295, 462, 697 |
| BspPI | GGATC | 4 cut(s) | 44, 70, 78, 115 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrGI | TGTACA | 1 cut(s) | 829 |
| BsrI | ACTGG | 2 cut(s) | 464, 697 |
| BssECI | CCNNGG | 2 cut(s) | 404, 505 |
| BssMI | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| BssT1I | CCWWGG | 2 cut(s) | 404, 505 |
| Bst4CI | ACNGT | 4 cut(s) | 201, 332, 515, 834 |
| Bst6I | CTCTTC | 2 cut(s) | 810, 897 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 152 |
| BstAUI | TGTACA | 1 cut(s) | 829 |
| BstDEI | CTNAG | 4 cut(s) | 17, 374, 717, 840 |
| BstF5I | GGATG | 3 cut(s) | 10, 88, 505 |
| BstFNI | CGCG | 1 cut(s) | 340 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 2 cut(s) | 64, 342 |
| BstKTI | GATC | 6 cut(s) | 39, 73, 78, 123, 473, 926 |
| BstMAI | GTCTC | 1 cut(s) | 563 |
| BstMBI | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstUI | CGCG | 1 cut(s) | 340 |
| BstV1I | GCAGC | 3 cut(s) | 142, 877, 928 |
| BstV2I | GAAGAC | 2 cut(s) | 249, 784 |
| BstX2I | RGATCY | 4 cut(s) | 36, 70, 120, 923 |
| BstYI | RGATCY | 4 cut(s) | 36, 70, 120, 923 |
| BsuRI | GGCC | 2 cut(s) | 463, 543 |
| BtsCI | GGATG | 3 cut(s) | 10, 88, 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 690 |
| CciI | TCATGA | 1 cut(s) | 898 |
| CfoI | GCGC | 2 cut(s) | 64, 342 |
| Cfr13I | GGNCC | 3 cut(s) | 461, 542, 664 |
| Csp6I | GTAC | 4 cut(s) | 252, 600, 830, 848 |
| CviAII | CATG | 5 cut(s) | 152, 363, 629, 668, 899 |
| CviQI | GTAC | 4 cut(s) | 252, 600, 830, 848 |
| DdeI | CTNAG | 4 cut(s) | 17, 374, 717, 840 |
| DpnI | GATC | 6 cut(s) | 38, 72, 77, 122, 472, 925 |
| DpnII | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| DraI | TTTAAA | 1 cut(s) | 772 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 593 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 593 |
| Eam1104I | CTCTTC | 2 cut(s) | 810, 897 |
| EarI | CTCTTC | 2 cut(s) | 810, 897 |
| Eco130I | CCWWGG | 2 cut(s) | 404, 505 |
| Eco47I | GGWCC | 1 cut(s) | 664 |
| Eco57I | CTGAAG | 2 cut(s) | 86, 607 |
| EcoRI | GAATTC | 1 cut(s) | 562 |
| EcoT14I | CCWWGG | 2 cut(s) | 404, 505 |
| ErhI | CCWWGG | 2 cut(s) | 404, 505 |
| FaeI | CATG | 5 cut(s) | 155, 366, 632, 671, 902 |
| FaiI | YATR | 7 cut(s) | 153, 218, 270, 364, 630, 669, 900 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 807, 839 |
| FatI | CATG | 5 cut(s) | 151, 362, 628, 667, 898 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 866, 917 |
| FokI | GGATG | 3 cut(s) | 17, 75, 512 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 866, 917 |
| FspBI | CTAG | 2 cut(s) | 506, 812 |
| GlaI | GCGC | 2 cut(s) | 63, 341 |
| GluI | GCNGC | 3 cut(s) | 156, 866, 917 |
| GsaI | CCCAGC | 1 cut(s) | 215 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 2 cut(s) | 463, 543 |
| HhaI | GCGC | 2 cut(s) | 64, 342 |
| Hin1II | CATG | 5 cut(s) | 155, 366, 632, 671, 902 |
| Hin6I | GCGC | 2 cut(s) | 62, 340 |
| HinP1I | GCGC | 2 cut(s) | 62, 340 |
| HinfI | GANTC | 4 cut(s) | 13, 85, 395, 676 |
| HphI | GGTGA | 1 cut(s) | 527 |
| Hpy188III | TCNNGA | 2 cut(s) | 497, 899 |
| HpyAV | CCTTC | 4 cut(s) | 61, 200, 232, 941 |
| HpyCH4III | ACNGT | 4 cut(s) | 201, 332, 515, 834 |
| HpyCH4IV | ACGT | 1 cut(s) | 254 |
| HpyCH4V | TGCA | 4 cut(s) | 30, 42, 158, 263 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 374, 717, 840 |
| HpySE526I | ACGT | 1 cut(s) | 254 |
| Hsp92II | CATG | 5 cut(s) | 155, 366, 632, 671, 902 |
| HspAI | GCGC | 2 cut(s) | 62, 340 |
| Kzo9I | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| LmnI | GCTCC | 3 cut(s) | 225, 293, 701 |
| LpnPI | CCDG | 9 cut(s) | 16, 197, 234, 310, 477, 482, 525, 678, 749 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 877, 928 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeI | CTAG | 2 cut(s) | 506, 812 |
| MaeII | ACGT | 1 cut(s) | 254 |
| MaeIII | GTNAC | 4 cut(s) | 386, 515, 614, 681 |
| MalI | GATC | 6 cut(s) | 38, 72, 77, 122, 472, 925 |
| MboI | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| MboII | GAAGA | 8 cut(s) | 242, 249, 613, 733, 789, 827, 871, 914 |
| MfeI | CAATTG | 2 cut(s) | 368, 851 |
| MflI | RGATCY | 4 cut(s) | 36, 70, 120, 923 |
| MluCI | AATT | 7 cut(s) | 25, 96, 307, 368, 432, 562, 851 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MmeI | TCCRAC | 2 cut(s) | 183, 504 |
| MnlI | CCTC | 7 cut(s) | 175, 180, 306, 412, 451, 555, 835 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MseI | TTAA | 2 cut(s) | 426, 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MunI | CAATTG | 2 cut(s) | 368, 851 |
| MvnI | CGCG | 1 cut(s) | 340 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeII | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| NlaIII | CATG | 5 cut(s) | 155, 366, 632, 671, 902 |
| NlaIV | GGNNCC | 3 cut(s) | 295, 462, 697 |
| NmeAIII | GCCGAG | 1 cut(s) | 613 |
| NmuCI | GTSAC | 3 cut(s) | 386, 515, 614 |
| PagI | TCATGA | 1 cut(s) | 898 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 3 cut(s) | 13, 85, 676 |
| PkrI | GCNGC | 3 cut(s) | 157, 867, 918 |
| PleI | GAGTC | 1 cut(s) | 389 |
| PpsI | GAGTC | 1 cut(s) | 389 |
| PspFI | CCCAGC | 1 cut(s) | 211 |
| PspN4I | GGNNCC | 3 cut(s) | 295, 462, 697 |
| PspPI | GGNCC | 3 cut(s) | 461, 542, 664 |
| PsuI | RGATCY | 4 cut(s) | 36, 70, 120, 923 |
| RsaI | GTAC | 4 cut(s) | 253, 601, 831, 849 |
| RsaNI | GTAC | 4 cut(s) | 252, 600, 830, 848 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 426, 771 |
| SatI | GCNGC | 3 cut(s) | 156, 866, 917 |
| Sau3AI | GATC | 6 cut(s) | 36, 70, 75, 120, 470, 923 |
| Sau96I | GGNCC | 3 cut(s) | 461, 542, 664 |
| SchI | GAGTC | 1 cut(s) | 389 |
| SetI | ASST | 7 cut(s) | 186, 257, 279, 317, 393, 579, 870 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| SinI | GGWCC | 1 cut(s) | 664 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| SmlI | CTYRAG | 1 cut(s) | 455 |
| SmoI | CTYRAG | 1 cut(s) | 455 |
| Sse9I | AATT | 7 cut(s) | 25, 96, 307, 368, 432, 562, 851 |
| SsiI | CCGC | 1 cut(s) | 845 |
| SspMI | CTAG | 2 cut(s) | 506, 812 |
| StyI | CCWWGG | 2 cut(s) | 404, 505 |
| TaaI | ACNGT | 4 cut(s) | 201, 332, 515, 834 |
| TaiI | ACGT | 1 cut(s) | 257 |
| TaqII | GACCGA | 1 cut(s) | 348 |
| TasI | AATT | 7 cut(s) | 25, 96, 307, 368, 432, 562, 851 |
| TatI | WGTACW | 1 cut(s) | 829 |
| TfiI | GAWTC | 3 cut(s) | 13, 85, 676 |
| Tru1I | TTAA | 2 cut(s) | 426, 771 |
| Tru9I | TTAA | 2 cut(s) | 426, 771 |
| TscAI | CASTG | 1 cut(s) | 697 |
| TseFI | GTSAC | 3 cut(s) | 386, 515, 614 |
| TseI | GCWGC | 3 cut(s) | 155, 865, 916 |
| Tsp45I | GTSAC | 3 cut(s) | 386, 515, 614 |
| TspDTI | ATGAA | 3 cut(s) | 140, 444, 915 |
| TspGWI | ACGGA | 1 cut(s) | 68 |
| TspRI | CASTG | 1 cut(s) | 697 |
| VpaK11BI | GGWCC | 1 cut(s) | 664 |
| XapI | RAATTY | 2 cut(s) | 432, 562 |
| XmaJI | CCTAGG | 1 cut(s) | 505 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |
| XspI | CTAG | 2 cut(s) | 506, 812 |