ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 593 |
| Acc16I | TGCGCA | 1 cut(s) | 1095 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 558 |
| AccBSI | CCGCTC | 1 cut(s) | 593 |
| AciI | CCGC | 2 cut(s) | 593, 953 |
| AclI | AACGTT | 1 cut(s) | 1022 |
| AclWI | GGATC | 8 cut(s) | 78, 363, 396, 525, 534, 764, 996, 1032 |
| AcoI | YGGCCR | 1 cut(s) | 705 |
| AcsI | RAATTY | 2 cut(s) | 12, 182 |
| AcuI | CTGAAG | 1 cut(s) | 1076 |
| AdeI | CACNNNGTG | 2 cut(s) | 558, 787 |
| AfaI | GTAC | 5 cut(s) | 253, 544, 722, 811, 821 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 205, 285, 487, 558, 1047 |
| AgsI | TTSAA | 8 cut(s) | 67, 134, 143, 427, 539, 733, 740, 929 |
| AjnI | CCWGG | 2 cut(s) | 295, 582 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 4 cut(s) | 293, 370, 473, 1181 |
| AluI | AGCT | 4 cut(s) | 293, 370, 473, 1181 |
| Alw21I | GWGCWC | 1 cut(s) | 295 |
| Alw26I | GTCTC | 2 cut(s) | 107, 215 |
| AlwI | GGATC | 8 cut(s) | 78, 363, 396, 525, 534, 764, 996, 1032 |
| Ama87I | CYCGRG | 1 cut(s) | 530 |
| AoxI | GGCC | 3 cut(s) | 196, 461, 705 |
| ApeKI | GCWGC | 5 cut(s) | 400, 1030, 1115, 1169, 1178 |
| ApoI | RAATTY | 2 cut(s) | 12, 182 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 136, 168 |
| AspA2I | CCTAGG | 1 cut(s) | 160 |
| AspLEI | GCGC | 3 cut(s) | 480, 582, 1096 |
| AspS9I | GGNCC | 2 cut(s) | 196, 461 |
| AsuC2I | CCSGG | 1 cut(s) | 917 |
| AsuHPI | GGTGA | 2 cut(s) | 330, 635 |
| AsuNHI | GCTAGC | 1 cut(s) | 689 |
| AvaI | CYCGRG | 1 cut(s) | 530 |
| AvrII | CCTAGG | 1 cut(s) | 160 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BalI | TGGCCA | 1 cut(s) | 707 |
| BanII | GRGCYC | 2 cut(s) | 295, 1054 |
| BauI | CACGAG | 1 cut(s) | 782 |
| Bbv12I | GWGCWC | 1 cut(s) | 295 |
| BbvI | GCAGC | 5 cut(s) | 387, 1042, 1102, 1156, 1190 |
| BccI | CCATC | 1 cut(s) | 979 |
| BciT130I | CCWGG | 2 cut(s) | 297, 584 |
| BciVI | GTATCC | 1 cut(s) | 923 |
| BcnI | CCSGG | 1 cut(s) | 917 |
| BcoDI | GTCTC | 2 cut(s) | 107, 215 |
| BfaI | CTAG | 5 cut(s) | 161, 690, 860, 908, 1125 |
| BfoI | RGCGCY | 1 cut(s) | 481 |
| BfuI | GTATCC | 1 cut(s) | 923 |
| BisI | GCNGC | 5 cut(s) | 401, 1031, 1116, 1170, 1179 |
| BlnI | CCTAGG | 1 cut(s) | 160 |
| BlpI | GCTNAGC | 1 cut(s) | 474 |
| BlsI | GCNGC | 5 cut(s) | 402, 1032, 1117, 1171, 1180 |
| Bme1390I | CCNGG | 3 cut(s) | 297, 584, 917 |
| BmeT110I | CYCGRG | 1 cut(s) | 530 |
| BmgT120I | GGNCC | 2 cut(s) | 196, 461 |
| BmrFI | CCNGG | 3 cut(s) | 297, 584, 917 |
| BmsI | GCATC | 2 cut(s) | 265, 490 |
| BmtI | GCTAGC | 1 cut(s) | 693 |
| BpmI | CTGGAG | 1 cut(s) | 279 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 474 |
| BpuMI | CCSGG | 1 cut(s) | 917 |
| BsaBI | GATNNNNATC | 2 cut(s) | 354, 768 |
| BsaI | GGTCTC | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 4 cut(s) | 160, 305, 404, 702 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1007, 1037 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 205, 285, 487, 558, 1047 |
| Bse1I | ACTGG | 2 cut(s) | 325, 1119 |
| Bse8I | GATNNNNATC | 2 cut(s) | 354, 768 |
| BseBI | CCWGG | 2 cut(s) | 297, 584 |
| BseDI | CCNNGG | 4 cut(s) | 160, 305, 404, 702 |
| BseJI | GATNNNNATC | 2 cut(s) | 354, 768 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 205, 285, 487, 558, 1047 |
| BseMII | CTCAG | 9 cut(s) | 95, 140, 179, 365, 465, 579, 587, 1025, 1173 |
| BseNI | ACTGG | 2 cut(s) | 325, 1119 |
| BseRI | GAGGAG | 1 cut(s) | 1143 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| BseXI | GCAGC | 5 cut(s) | 387, 1042, 1102, 1156, 1190 |
| BsgI | GTGCAG | 1 cut(s) | 583 |
| BshFI | GGCC | 3 cut(s) | 198, 463, 707 |
| BsiHKAI | GWGCWC | 1 cut(s) | 295 |
| BsiHKCI | CYCGRG | 1 cut(s) | 530 |
| BsiSI | CCGG | 1 cut(s) | 916 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 205, 285, 487, 558, 1047 |
| BsmAI | GTCTC | 2 cut(s) | 107, 215 |
| BsnI | GGCC | 3 cut(s) | 198, 463, 707 |
| Bso31I | GGTCTC | 1 cut(s) | 215 |
| BsoBI | CYCGRG | 1 cut(s) | 530 |
| Bsp1286I | GDGCHC | 3 cut(s) | 160, 295, 1054 |
| Bsp1407I | TGTACA | 1 cut(s) | 819 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 474 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 2 cut(s) | 593, 953 |
| BspANI | GGCC | 3 cut(s) | 198, 463, 707 |
| BspCNI | CTCAG | 9 cut(s) | 94, 141, 180, 366, 466, 578, 586, 1024, 1174 |
| BspOI | GCTAGC | 1 cut(s) | 693 |
| BspPI | GGATC | 8 cut(s) | 78, 363, 396, 525, 534, 764, 996, 1032 |
| BspTNI | GGTCTC | 1 cut(s) | 215 |
| BsrBI | CCGCTC | 1 cut(s) | 593 |
| BsrGI | TGTACA | 1 cut(s) | 819 |
| BsrI | ACTGG | 2 cut(s) | 325, 1119 |
| BssECI | CCNNGG | 4 cut(s) | 160, 305, 404, 702 |
| BssSI | CACGAG | 1 cut(s) | 782 |
| BssT1I | CCWWGG | 3 cut(s) | 160, 305, 404 |
| Bst2BI | CACGAG | 1 cut(s) | 782 |
| Bst2UI | CCWGG | 2 cut(s) | 297, 584 |
| Bst4CI | ACNGT | 1 cut(s) | 443 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1112 |
| BstAUI | TGTACA | 1 cut(s) | 819 |
| BstC8I | GCNNGC | 1 cut(s) | 691 |
| BstDSI | CCRYGG | 2 cut(s) | 404, 702 |
| BstH2I | RGCGCY | 1 cut(s) | 481 |
| BstHHI | GCGC | 3 cut(s) | 480, 582, 1096 |
| BstMAI | GTCTC | 2 cut(s) | 107, 215 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1112, 1175, 1178 |
| BstNI | CCWGG | 2 cut(s) | 297, 584 |
| BstNSI | RCATGY | 1 cut(s) | 761 |
| BstSCI | CCNGG | 3 cut(s) | 295, 582, 915 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstV1I | GCAGC | 5 cut(s) | 387, 1042, 1102, 1156, 1190 |
| BstX2I | RGATCY | 5 cut(s) | 70, 388, 517, 526, 1037 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 703 |
| BstYI | RGATCY | 5 cut(s) | 70, 388, 517, 526, 1037 |
| BsuI | GTATCC | 1 cut(s) | 923 |
| BsuRI | GGCC | 3 cut(s) | 198, 463, 707 |
| BtgI | CCRYGG | 2 cut(s) | 404, 702 |
| BtgZI | GCGATG | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 1 cut(s) | 448 |
| Cac8I | GCNNGC | 1 cut(s) | 691 |
| CfoI | GCGC | 3 cut(s) | 480, 582, 1096 |
| Cfr13I | GGNCC | 2 cut(s) | 196, 461 |
| Csp6I | GTAC | 5 cut(s) | 252, 543, 721, 810, 820 |
| CviAII | CATG | 8 cut(s) | 245, 363, 405, 555, 609, 758, 943, 1112 |
| CviQI | GTAC | 5 cut(s) | 252, 543, 721, 810, 820 |
| DraIII | CACNNNGTG | 2 cut(s) | 558, 787 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 593 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 593 |
| EaeI | YGGCCR | 1 cut(s) | 705 |
| Ecl136II | GAGCTC | 1 cut(s) | 293 |
| Eco130I | CCWWGG | 3 cut(s) | 160, 305, 404 |
| Eco24I | GRGCYC | 2 cut(s) | 295, 1054 |
| Eco31I | GGTCTC | 1 cut(s) | 215 |
| Eco53kI | GAGCTC | 1 cut(s) | 293 |
| Eco57I | CTGAAG | 1 cut(s) | 1076 |
| Eco88I | CYCGRG | 1 cut(s) | 530 |
| EcoICRI | GAGCTC | 1 cut(s) | 293 |
| EcoRII | CCWGG | 2 cut(s) | 295, 582 |
| EcoT14I | CCWWGG | 3 cut(s) | 160, 305, 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 505 |
| EcoT38I | GRGCYC | 2 cut(s) | 295, 1054 |
| ErhI | CCWWGG | 3 cut(s) | 160, 305, 404 |
| FaeI | CATG | 8 cut(s) | 248, 366, 408, 558, 612, 761, 946, 1115 |
| FatI | CATG | 8 cut(s) | 244, 362, 404, 554, 608, 757, 942, 1111 |
| FauNDI | CATATG | 1 cut(s) | 903 |
| Fnu4HI | GCNGC | 5 cut(s) | 401, 1031, 1116, 1170, 1179 |
| FriOI | GRGCYC | 2 cut(s) | 295, 1054 |
| Fsp4HI | GCNGC | 5 cut(s) | 401, 1031, 1116, 1170, 1179 |
| FspBI | CTAG | 5 cut(s) | 161, 690, 860, 908, 1125 |
| FspI | TGCGCA | 1 cut(s) | 1095 |
| GlaI | GCGC | 3 cut(s) | 479, 581, 1095 |
| GluI | GCNGC | 5 cut(s) | 401, 1031, 1116, 1170, 1179 |
| GsuI | CTGGAG | 1 cut(s) | 279 |
| HaeII | RGCGCY | 1 cut(s) | 481 |
| HaeIII | GGCC | 3 cut(s) | 198, 463, 707 |
| HapII | CCGG | 1 cut(s) | 916 |
| HhaI | GCGC | 3 cut(s) | 480, 582, 1096 |
| Hin1II | CATG | 8 cut(s) | 248, 366, 408, 558, 612, 761, 946, 1115 |
| Hin6I | GCGC | 3 cut(s) | 478, 580, 1094 |
| HinP1I | GCGC | 3 cut(s) | 478, 580, 1094 |
| HinfI | GANTC | 7 cut(s) | 36, 85, 151, 395, 433, 492, 659 |
| HpaII | CCGG | 1 cut(s) | 916 |
| HphI | GGTGA | 2 cut(s) | 330, 635 |
| Hpy166II | GTNNAC | 1 cut(s) | 781 |
| Hpy188I | TCNGA | 9 cut(s) | 84, 150, 189, 215, 497, 568, 654, 664, 1056 |
| Hpy188III | TCNNGA | 6 cut(s) | 134, 353, 392, 524, 1013, 1130 |
| Hpy8I | GTNNAC | 1 cut(s) | 781 |
| HpyAV | CCTTC | 4 cut(s) | 61, 628, 1013, 1051 |
| HpyCH4III | ACNGT | 1 cut(s) | 443 |
| HpyCH4IV | ACGT | 3 cut(s) | 712, 881, 1022 |
| HpyCH4V | TGCA | 5 cut(s) | 30, 503, 600, 997, 1178 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1112, 1175, 1178 |
| HpySE526I | ACGT | 3 cut(s) | 712, 881, 1022 |
| Hsp92II | CATG | 8 cut(s) | 248, 366, 408, 558, 612, 761, 946, 1115 |
| HspAI | GCGC | 3 cut(s) | 478, 580, 1094 |
| LmnI | GCTCC | 3 cut(s) | 290, 298, 1156 |
| Lsp1109I | GCAGC | 5 cut(s) | 387, 1042, 1102, 1156, 1190 |
| LweI | GCATC | 2 cut(s) | 265, 490 |
| MaeI | CTAG | 5 cut(s) | 161, 690, 860, 908, 1125 |
| MaeII | ACGT | 3 cut(s) | 712, 881, 1022 |
| MaeIII | GTNAC | 4 cut(s) | 637, 656, 681, 750 |
| MbiI | CCGCTC | 1 cut(s) | 593 |
| MboII | GAAGA | 3 cut(s) | 512, 941, 985 |
| MflI | RGATCY | 5 cut(s) | 70, 388, 517, 526, 1037 |
| MhlI | GDGCHC | 3 cut(s) | 160, 295, 1054 |
| MlsI | TGGCCA | 1 cut(s) | 707 |
| MluCI | AATT | 6 cut(s) | 12, 25, 96, 182, 932, 1133 |
| MluNI | TGGCCA | 1 cut(s) | 707 |
| MlyI | GAGTC | 2 cut(s) | 160, 653 |
| Mox20I | TGGCCA | 1 cut(s) | 707 |
| Mph1103I | ATGCAT | 1 cut(s) | 505 |
| MscI | TGGCCA | 1 cut(s) | 707 |
| MseI | TTAA | 2 cut(s) | 317, 831 |
| MslI | CAYNNNNRTG | 3 cut(s) | 273, 607, 701 |
| Msp20I | TGGCCA | 1 cut(s) | 707 |
| MspA1I | CMGCKG | 1 cut(s) | 1181 |
| MspI | CCGG | 1 cut(s) | 916 |
| MspR9I | CCNGG | 3 cut(s) | 297, 584, 917 |
| MvaI | CCWGG | 2 cut(s) | 297, 584 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1112, 1175, 1178 |
| NciI | CCSGG | 1 cut(s) | 917 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeI | CATATG | 1 cut(s) | 903 |
| NheI | GCTAGC | 1 cut(s) | 689 |
| NlaIII | CATG | 8 cut(s) | 248, 366, 408, 558, 612, 761, 946, 1115 |
| NmeAIII | GCCGAG | 1 cut(s) | 304 |
| NmuCI | GTSAC | 1 cut(s) | 656 |
| NsbI | TGCGCA | 1 cut(s) | 1095 |
| NsiI | ATGCAT | 1 cut(s) | 505 |
| NspI | RCATGY | 1 cut(s) | 761 |
| PfeI | GAWTC | 5 cut(s) | 36, 85, 395, 433, 492 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 558 |
| PfoI | TCCNGGA | 1 cut(s) | 295 |
| PkrI | GCNGC | 5 cut(s) | 402, 1032, 1117, 1171, 1180 |
| PleI | GAGTC | 2 cut(s) | 159, 653 |
| PpsI | GAGTC | 2 cut(s) | 159, 653 |
| Psp124BI | GAGCTC | 1 cut(s) | 295 |
| Psp1406I | AACGTT | 1 cut(s) | 1022 |
| Psp6I | CCWGG | 2 cut(s) | 295, 582 |
| PspGI | CCWGG | 2 cut(s) | 295, 582 |
| PspPI | GGNCC | 2 cut(s) | 196, 461 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 713, 745 |
| PsuI | RGATCY | 5 cut(s) | 70, 388, 517, 526, 1037 |
| PvuII | CAGCTG | 1 cut(s) | 1181 |
| RsaI | GTAC | 5 cut(s) | 253, 544, 722, 811, 821 |
| RsaNI | GTAC | 5 cut(s) | 252, 543, 721, 810, 820 |
| RseI | CAYNNNNRTG | 3 cut(s) | 273, 607, 701 |
| SacI | GAGCTC | 1 cut(s) | 295 |
| SaqAI | TTAA | 2 cut(s) | 317, 831 |
| SatI | GCNGC | 5 cut(s) | 401, 1031, 1116, 1170, 1179 |
| Sau96I | GGNCC | 2 cut(s) | 196, 461 |
| SchI | GAGTC | 2 cut(s) | 160, 653 |
| ScrFI | CCNGG | 3 cut(s) | 297, 584, 917 |
| SduI | GDGCHC | 3 cut(s) | 160, 295, 1054 |
| SfaNI | GCATC | 2 cut(s) | 265, 490 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 273, 607, 701 |
| Sse9I | AATT | 6 cut(s) | 12, 25, 96, 182, 932, 1133 |
| SsiI | CCGC | 2 cut(s) | 593, 953 |
| SspI | AATATT | 1 cut(s) | 130 |
| SspMI | CTAG | 5 cut(s) | 161, 690, 860, 908, 1125 |
| SstI | GAGCTC | 1 cut(s) | 295 |
| StyD4I | CCNGG | 3 cut(s) | 295, 582, 915 |
| StyI | CCWWGG | 3 cut(s) | 160, 305, 404 |
| TaaI | ACNGT | 1 cut(s) | 443 |
| TaiI | ACGT | 3 cut(s) | 715, 884, 1025 |
| TasI | AATT | 6 cut(s) | 12, 25, 96, 182, 932, 1133 |
| TatI | WGTACW | 1 cut(s) | 819 |
| TfiI | GAWTC | 5 cut(s) | 36, 85, 395, 433, 492 |
| Tru1I | TTAA | 2 cut(s) | 317, 831 |
| Tru9I | TTAA | 2 cut(s) | 317, 831 |
| TscAI | CASTG | 1 cut(s) | 448 |
| TseFI | GTSAC | 1 cut(s) | 656 |
| TseI | GCWGC | 5 cut(s) | 400, 1030, 1115, 1169, 1178 |
| Tsp45I | GTSAC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 1 cut(s) | 351 |
| TspRI | CASTG | 1 cut(s) | 448 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 558 |
| XapI | RAATTY | 2 cut(s) | 12, 182 |
| XceI | RCATGY | 1 cut(s) | 761 |
| XmaJI | CCTAGG | 1 cut(s) | 160 |
| XspI | CTAG | 5 cut(s) | 161, 690, 860, 908, 1125 |
| Zsp2I | ATGCAT | 1 cut(s) | 505 |