ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 105 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AccII | CGCG | 1 cut(s) | 16 |
| AciI | CCGC | 1 cut(s) | 16 |
| AclI | AACGTT | 1 cut(s) | 259 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AcyI | GRCGYC | 1 cut(s) | 106 |
| AfaI | GTAC | 1 cut(s) | 232 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 41 |
| AgsI | TTSAA | 2 cut(s) | 118, 292 |
| AjnI | CCWGG | 2 cut(s) | 190, 207 |
| AluBI | AGCT | 2 cut(s) | 92, 129 |
| AluI | AGCT | 2 cut(s) | 92, 129 |
| ApeKI | GCWGC | 3 cut(s) | 8, 11, 89 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| AspLEI | GCGC | 3 cut(s) | 16, 108, 139 |
| AspS9I | GGNCC | 1 cut(s) | 46 |
| AvaII | GGWCC | 1 cut(s) | 46 |
| BanI | GGYRCC | 1 cut(s) | 105 |
| BbvI | GCAGC | 3 cut(s) | 20, 23, 101 |
| BciT130I | CCWGG | 2 cut(s) | 192, 209 |
| BfaI | CTAG | 4 cut(s) | 93, 99, 168, 234 |
| BfoI | RGCGCY | 2 cut(s) | 109, 140 |
| BisI | GCNGC | 3 cut(s) | 9, 12, 90 |
| BlsI | GCNGC | 3 cut(s) | 10, 13, 91 |
| BmcAI | AGTACT | 1 cut(s) | 232 |
| Bme1390I | CCNGG | 2 cut(s) | 192, 209 |
| Bme18I | GGWCC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 1 cut(s) | 46 |
| BmiI | GGNNCC | 2 cut(s) | 47, 107 |
| BmrFI | CCNGG | 2 cut(s) | 192, 209 |
| BmsI | GCATC | 1 cut(s) | 34 |
| BpmI | CTGGAG | 1 cut(s) | 191 |
| BsaAI | YACGTR | 1 cut(s) | 252 |
| BsaBI | GATNNNNATC | 1 cut(s) | 150 |
| BsaHI | GRCGYC | 1 cut(s) | 106 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 67, 97, 189, 219 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 41 |
| Bse1I | ACTGG | 1 cut(s) | 228 |
| Bse8I | GATNNNNATC | 1 cut(s) | 150 |
| BseBI | CCWGG | 2 cut(s) | 192, 209 |
| BseJI | GATNNNNATC | 1 cut(s) | 150 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 41 |
| BseNI | ACTGG | 1 cut(s) | 228 |
| BseRI | GAGGAG | 1 cut(s) | 70 |
| BseXI | GCAGC | 3 cut(s) | 20, 23, 101 |
| Bsh1236I | CGCG | 1 cut(s) | 16 |
| BshNI | GGYRCC | 1 cut(s) | 105 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BslFI | GGGAC | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 41 |
| BsmFI | GGGAC | 1 cut(s) | 59 |
| BspACI | CCGC | 1 cut(s) | 16 |
| BspFNI | CGCG | 1 cut(s) | 16 |
| BspHI | TCATGA | 1 cut(s) | 142 |
| BspLI | GGNNCC | 2 cut(s) | 47, 107 |
| BspT107I | GGYRCC | 1 cut(s) | 105 |
| BsrI | ACTGG | 1 cut(s) | 228 |
| BssNI | GRCGYC | 1 cut(s) | 106 |
| Bst2UI | CCWGG | 2 cut(s) | 192, 209 |
| BstACI | GRCGYC | 1 cut(s) | 106 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 95 |
| BstBAI | YACGTR | 1 cut(s) | 252 |
| BstFNI | CGCG | 1 cut(s) | 16 |
| BstH2I | RGCGCY | 2 cut(s) | 109, 140 |
| BstHHI | GCGC | 3 cut(s) | 16, 108, 139 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 22, 95 |
| BstNI | CCWGG | 2 cut(s) | 192, 209 |
| BstSCI | CCNGG | 2 cut(s) | 190, 207 |
| BstUI | CGCG | 1 cut(s) | 16 |
| BstV1I | GCAGC | 3 cut(s) | 20, 23, 101 |
| CciI | TCATGA | 1 cut(s) | 142 |
| CfoI | GCGC | 3 cut(s) | 16, 108, 139 |
| Cfr13I | GGNCC | 1 cut(s) | 46 |
| Csp6I | GTAC | 1 cut(s) | 231 |
| CviAII | CATG | 2 cut(s) | 22, 143 |
| CviJI | RGCY | 4 cut(s) | 92, 129, 179, 212 |
| CviKI_1 | RGCY | 4 cut(s) | 92, 129, 179, 212 |
| CviQI | GTAC | 1 cut(s) | 231 |
| DinI | GGCGCC | 1 cut(s) | 107 |
| Eco47I | GGWCC | 1 cut(s) | 46 |
| EcoRII | CCWGG | 2 cut(s) | 190, 207 |
| EcoT22I | ATGCAT | 1 cut(s) | 27 |
| EgeI | GGCGCC | 1 cut(s) | 107 |
| EheI | GGCGCC | 1 cut(s) | 107 |
| FaeI | CATG | 2 cut(s) | 25, 146 |
| FaiI | YATR | 5 cut(s) | 23, 51, 53, 144, 203 |
| FaqI | GGGAC | 1 cut(s) | 59 |
| FatI | CATG | 2 cut(s) | 21, 142 |
| FauI | CCCGC | 1 cut(s) | 9 |
| FauNDI | CATATG | 1 cut(s) | 51 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 3 cut(s) | 9, 12, 90 |
| Fsp4HI | GCNGC | 3 cut(s) | 9, 12, 90 |
| FspBI | CTAG | 4 cut(s) | 93, 99, 168, 234 |
| GlaI | GCGC | 3 cut(s) | 15, 107, 138 |
| GluI | GCNGC | 3 cut(s) | 9, 12, 90 |
| GsuI | CTGGAG | 1 cut(s) | 191 |
| HaeII | RGCGCY | 2 cut(s) | 109, 140 |
| HapII | CCGG | 1 cut(s) | 86 |
| HhaI | GCGC | 3 cut(s) | 16, 108, 139 |
| Hin1I | GRCGYC | 1 cut(s) | 106 |
| Hin1II | CATG | 2 cut(s) | 25, 146 |
| Hin6I | GCGC | 3 cut(s) | 14, 106, 137 |
| HinP1I | GCGC | 3 cut(s) | 14, 106, 137 |
| HinfI | GANTC | 1 cut(s) | 114 |
| HpaII | CCGG | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 1 cut(s) | 197 |
| Hpy188I | TCNGA | 1 cut(s) | 156 |
| Hpy188III | TCNNGA | 2 cut(s) | 143, 281 |
| Hpy8I | GTNNAC | 1 cut(s) | 197 |
| Hpy99I | CGWCG | 2 cut(s) | 114, 282 |
| HpyAV | CCTTC | 2 cut(s) | 96, 151 |
| HpyCH4IV | ACGT | 2 cut(s) | 251, 259 |
| HpyCH4V | TGCA | 1 cut(s) | 25 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 22, 95 |
| HpySE526I | ACGT | 2 cut(s) | 251, 259 |
| Hsp92I | GRCGYC | 1 cut(s) | 106 |
| Hsp92II | CATG | 2 cut(s) | 25, 146 |
| HspAI | GCGC | 3 cut(s) | 14, 106, 137 |
| KasI | GGCGCC | 1 cut(s) | 105 |
| LmnI | GCTCC | 1 cut(s) | 210 |
| LpnPI | CCDG | 7 cut(s) | 99, 118, 177, 194, 204, 221, 241 |
| Lsp1109I | GCAGC | 3 cut(s) | 20, 23, 101 |
| LweI | GCATC | 1 cut(s) | 34 |
| MaeI | CTAG | 4 cut(s) | 93, 99, 168, 234 |
| MaeII | ACGT | 2 cut(s) | 251, 259 |
| MboII | GAAGA | 2 cut(s) | 229, 232 |
| MluCI | AATT | 3 cut(s) | 63, 119, 292 |
| Mly113I | GGCGCC | 1 cut(s) | 106 |
| MnlI | CCTC | 4 cut(s) | 42, 66, 88, 91 |
| Mph1103I | ATGCAT | 1 cut(s) | 27 |
| MseI | TTAA | 2 cut(s) | 62, 245 |
| MspI | CCGG | 1 cut(s) | 86 |
| MspR9I | CCNGG | 2 cut(s) | 192, 209 |
| MvaI | CCWGG | 2 cut(s) | 192, 209 |
| MvnI | CGCG | 1 cut(s) | 16 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 22, 95 |
| NarI | GGCGCC | 1 cut(s) | 106 |
| NdeI | CATATG | 1 cut(s) | 51 |
| NlaIII | CATG | 2 cut(s) | 25, 146 |
| NlaIV | GGNNCC | 2 cut(s) | 47, 107 |
| NsiI | ATGCAT | 1 cut(s) | 27 |
| PagI | TCATGA | 1 cut(s) | 142 |
| PfeI | GAWTC | 1 cut(s) | 114 |
| PkrI | GCNGC | 3 cut(s) | 10, 13, 91 |
| PluTI | GGCGCC | 1 cut(s) | 109 |
| Ppu21I | YACGTR | 1 cut(s) | 252 |
| Psp1406I | AACGTT | 1 cut(s) | 259 |
| Psp6I | CCWGG | 2 cut(s) | 190, 207 |
| PspGI | CCWGG | 2 cut(s) | 190, 207 |
| PspN4I | GGNNCC | 2 cut(s) | 47, 107 |
| PspPI | GGNCC | 1 cut(s) | 46 |
| RsaI | GTAC | 1 cut(s) | 232 |
| RsaNI | GTAC | 1 cut(s) | 231 |
| SaqAI | TTAA | 2 cut(s) | 62, 245 |
| SatI | GCNGC | 3 cut(s) | 9, 12, 90 |
| Sau96I | GGNCC | 1 cut(s) | 46 |
| ScaI | AGTACT | 1 cut(s) | 232 |
| ScrFI | CCNGG | 2 cut(s) | 192, 209 |
| SetI | ASST | 7 cut(s) | 80, 94, 131, 162, 202, 254, 262 |
| SfaNI | GCATC | 1 cut(s) | 34 |
| SfoI | GGCGCC | 1 cut(s) | 107 |
| SinI | GGWCC | 1 cut(s) | 46 |
| Sse9I | AATT | 3 cut(s) | 63, 119, 292 |
| SsiI | CCGC | 1 cut(s) | 16 |
| SspDI | GGCGCC | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 93, 99, 168, 234 |
| StyD4I | CCNGG | 2 cut(s) | 190, 207 |
| TaiI | ACGT | 2 cut(s) | 254, 262 |
| TaqI | TCGA | 1 cut(s) | 280 |
| TasI | AATT | 3 cut(s) | 63, 119, 292 |
| TatI | WGTACW | 1 cut(s) | 230 |
| TfiI | GAWTC | 1 cut(s) | 114 |
| Tru1I | TTAA | 2 cut(s) | 62, 245 |
| Tru9I | TTAA | 2 cut(s) | 62, 245 |
| TseI | GCWGC | 3 cut(s) | 8, 11, 89 |
| TspDTI | ATGAA | 1 cut(s) | 131 |
| VpaK11BI | GGWCC | 1 cut(s) | 46 |
| XapI | RAATTY | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XspI | CTAG | 4 cut(s) | 93, 99, 168, 234 |
| ZrmI | AGTACT | 1 cut(s) | 232 |
| Zsp2I | ATGCAT | 1 cut(s) | 27 |