ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 533 |
| AciI | CCGC | 3 cut(s) | 442, 523, 799 |
| AclWI | GGATC | 2 cut(s) | 22, 494 |
| AcoI | YGGCCR | 2 cut(s) | 443, 717 |
| AcsI | RAATTY | 2 cut(s) | 464, 729 |
| AfaI | GTAC | 1 cut(s) | 645 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 805, 823 |
| AgsI | TTSAA | 6 cut(s) | 157, 269, 276, 470, 485, 728 |
| AhlI | ACTAGT | 1 cut(s) | 515 |
| AleI | CACNNNNGTG | 1 cut(s) | 337 |
| AluBI | AGCT | 4 cut(s) | 77, 281, 419, 724 |
| AluI | AGCT | 4 cut(s) | 77, 281, 419, 724 |
| Alw21I | GWGCWC | 1 cut(s) | 332 |
| Alw26I | GTCTC | 1 cut(s) | 506 |
| Alw44I | GTGCAC | 1 cut(s) | 328 |
| AlwI | GGATC | 2 cut(s) | 22, 494 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 103 |
| AoxI | GGCC | 3 cut(s) | 191, 443, 717 |
| ApaLI | GTGCAC | 1 cut(s) | 328 |
| ApeKI | GCWGC | 1 cut(s) | 827 |
| ApoI | RAATTY | 2 cut(s) | 464, 729 |
| AspA2I | CCTAGG | 1 cut(s) | 259 |
| AspS9I | GGNCC | 4 cut(s) | 19, 191, 256, 796 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 154, 571 |
| AvaII | GGWCC | 3 cut(s) | 19, 256, 796 |
| AvrII | CCTAGG | 1 cut(s) | 259 |
| BaeGI | GKGCMC | 1 cut(s) | 332 |
| BalI | TGGCCA | 1 cut(s) | 719 |
| Bbv12I | GWGCWC | 1 cut(s) | 332 |
| BbvCI | CCTCAGC | 1 cut(s) | 104 |
| BbvI | GCAGC | 1 cut(s) | 814 |
| BccI | CCATC | 3 cut(s) | 462, 709, 825 |
| BclI | TGATCA | 1 cut(s) | 394 |
| BcoDI | GTCTC | 1 cut(s) | 506 |
| BcuI | ACTAGT | 1 cut(s) | 515 |
| BisI | GCNGC | 2 cut(s) | 443, 828 |
| BlnI | CCTAGG | 1 cut(s) | 259 |
| BlsI | GCNGC | 2 cut(s) | 444, 829 |
| Bme18I | GGWCC | 3 cut(s) | 19, 256, 796 |
| BmgT120I | GGNCC | 4 cut(s) | 19, 191, 256, 796 |
| BmiI | GGNNCC | 1 cut(s) | 797 |
| BmsI | GCATC | 2 cut(s) | 313, 624 |
| Bpu10I | CCTNAGC | 1 cut(s) | 104 |
| Bsa29I | ATCGAT | 1 cut(s) | 457 |
| BsaAI | YACGTR | 2 cut(s) | 285, 647 |
| BsaBI | GATNNNNATC | 1 cut(s) | 498 |
| BsaJI | CCNNGG | 3 cut(s) | 12, 31, 259 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 805, 823 |
| Bse118I | RCCGGY | 1 cut(s) | 50 |
| Bse1I | ACTGG | 2 cut(s) | 318, 541 |
| Bse8I | GATNNNNATC | 1 cut(s) | 498 |
| BseCI | ATCGAT | 1 cut(s) | 457 |
| BseDI | CCNNGG | 3 cut(s) | 12, 31, 259 |
| BseGI | GGATG | 1 cut(s) | 399 |
| BseJI | GATNNNNATC | 1 cut(s) | 498 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 805, 823 |
| BseMII | CTCAG | 4 cut(s) | 95, 309, 322, 519 |
| BseNI | ACTGG | 2 cut(s) | 318, 541 |
| BseRI | GAGGAG | 1 cut(s) | 713 |
| BseSI | GKGCMC | 1 cut(s) | 332 |
| BseXI | GCAGC | 1 cut(s) | 814 |
| BsgI | GTGCAG | 1 cut(s) | 444 |
| BshFI | GGCC | 3 cut(s) | 193, 445, 719 |
| BshVI | ATCGAT | 1 cut(s) | 457 |
| BsiHKAI | GWGCWC | 1 cut(s) | 332 |
| BsiSI | CCGG | 1 cut(s) | 51 |
| BslFI | GGGAC | 1 cut(s) | 809 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 805, 823 |
| BsmAI | GTCTC | 1 cut(s) | 506 |
| BsmFI | GGGAC | 1 cut(s) | 809 |
| BsnI | GGCC | 3 cut(s) | 193, 445, 719 |
| Bsp1286I | GDGCHC | 1 cut(s) | 332 |
| Bsp143I | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| BspACI | CCGC | 3 cut(s) | 442, 523, 799 |
| BspANI | GGCC | 3 cut(s) | 193, 445, 719 |
| BspCNI | CTCAG | 4 cut(s) | 96, 308, 321, 520 |
| BspDI | ATCGAT | 1 cut(s) | 457 |
| BspLI | GGNNCC | 1 cut(s) | 797 |
| BspPI | GGATC | 2 cut(s) | 22, 494 |
| BsrFI | RCCGGY | 1 cut(s) | 50 |
| BsrI | ACTGG | 2 cut(s) | 318, 541 |
| BssAI | RCCGGY | 1 cut(s) | 50 |
| BssECI | CCNNGG | 3 cut(s) | 12, 31, 259 |
| BssMI | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| BssNAI | GTATAC | 1 cut(s) | 534 |
| BssT1I | CCWWGG | 1 cut(s) | 259 |
| Bst1107I | GTATAC | 1 cut(s) | 534 |
| Bst4CI | ACNGT | 5 cut(s) | 16, 35, 245, 336, 623 |
| Bst6I | CTCTTC | 1 cut(s) | 679 |
| BstBAI | YACGTR | 2 cut(s) | 285, 647 |
| BstC8I | GCNNGC | 2 cut(s) | 70, 585 |
| BstDEI | CTNAG | 4 cut(s) | 104, 295, 308, 528 |
| BstDSI | CCRYGG | 2 cut(s) | 12, 31 |
| BstF5I | GGATG | 1 cut(s) | 399 |
| BstKTI | GATC | 5 cut(s) | 30, 121, 397, 502, 770 |
| BstMAI | GTCTC | 1 cut(s) | 506 |
| BstMBI | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstSLI | GKGCMC | 1 cut(s) | 332 |
| BstV1I | GCAGC | 1 cut(s) | 814 |
| BstZ17I | GTATAC | 1 cut(s) | 534 |
| Bsu15I | ATCGAT | 1 cut(s) | 457 |
| BsuRI | GGCC | 3 cut(s) | 193, 445, 719 |
| BsuTUI | ATCGAT | 1 cut(s) | 457 |
| BtgI | CCRYGG | 2 cut(s) | 12, 31 |
| BtsCI | GGATG | 1 cut(s) | 399 |
| Cac8I | GCNNGC | 2 cut(s) | 70, 585 |
| CaiI | CAGNNNCTG | 1 cut(s) | 103 |
| Cfr10I | RCCGGY | 1 cut(s) | 50 |
| Cfr13I | GGNCC | 4 cut(s) | 19, 191, 256, 796 |
| ClaI | ATCGAT | 1 cut(s) | 457 |
| Csp6I | GTAC | 1 cut(s) | 644 |
| CviAII | CATG | 1 cut(s) | 135 |
| CviQI | GTAC | 1 cut(s) | 644 |
| DdeI | CTNAG | 4 cut(s) | 104, 295, 308, 528 |
| DpnI | GATC | 5 cut(s) | 29, 120, 396, 501, 769 |
| DpnII | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| DraI | TTTAAA | 1 cut(s) | 463 |
| EaeI | YGGCCR | 2 cut(s) | 443, 717 |
| Eam1104I | CTCTTC | 1 cut(s) | 679 |
| EarI | CTCTTC | 1 cut(s) | 679 |
| EciI | GGCGGA | 1 cut(s) | 538 |
| Eco130I | CCWWGG | 1 cut(s) | 259 |
| Eco47I | GGWCC | 3 cut(s) | 19, 256, 796 |
| EcoT14I | CCWWGG | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 259 |
| FaeI | CATG | 1 cut(s) | 138 |
| FaiI | YATR | 6 cut(s) | 60, 66, 136, 534, 548, 822 |
| FaqI | GGGAC | 1 cut(s) | 809 |
| FatI | CATG | 1 cut(s) | 134 |
| FbaI | TGATCA | 1 cut(s) | 394 |
| FblI | GTMKAC | 1 cut(s) | 533 |
| Fnu4HI | GCNGC | 2 cut(s) | 443, 828 |
| FokI | GGATG | 1 cut(s) | 386 |
| Fsp4HI | GCNGC | 2 cut(s) | 443, 828 |
| GluI | GCNGC | 2 cut(s) | 443, 828 |
| HaeIII | GGCC | 3 cut(s) | 193, 445, 719 |
| HapII | CCGG | 1 cut(s) | 51 |
| Hin1II | CATG | 1 cut(s) | 138 |
| HincII | GTYRAC | 1 cut(s) | 626 |
| HindII | GTYRAC | 1 cut(s) | 626 |
| HindIII | AAGCTT | 1 cut(s) | 722 |
| HinfI | GANTC | 7 cut(s) | 125, 163, 370, 389, 470, 540, 671 |
| HpaII | CCGG | 1 cut(s) | 51 |
| HphI | GGTGA | 3 cut(s) | 128, 154, 571 |
| Hpy166II | GTNNAC | 3 cut(s) | 330, 534, 626 |
| Hpy188I | TCNGA | 4 cut(s) | 298, 311, 394, 432 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 276 |
| Hpy8I | GTNNAC | 3 cut(s) | 330, 534, 626 |
| Hpy99I | CGWCG | 1 cut(s) | 340 |
| HpyAV | CCTTC | 1 cut(s) | 598 |
| HpyCH4III | ACNGT | 5 cut(s) | 16, 35, 245, 336, 623 |
| HpyCH4IV | ACGT | 2 cut(s) | 284, 646 |
| HpyCH4V | TGCA | 5 cut(s) | 68, 330, 425, 572, 587 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 4 cut(s) | 104, 295, 308, 528 |
| HpySE526I | ACGT | 2 cut(s) | 284, 646 |
| Hsp92II | CATG | 1 cut(s) | 138 |
| Ksp22I | TGATCA | 1 cut(s) | 394 |
| Kzo9I | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| LpnPI | CCDG | 7 cut(s) | 64, 107, 211, 299, 522, 539, 728 |
| Lsp1109I | GCAGC | 1 cut(s) | 814 |
| LweI | GCATC | 2 cut(s) | 313, 624 |
| MaeII | ACGT | 2 cut(s) | 284, 646 |
| MaeIII | GTNAC | 2 cut(s) | 245, 386 |
| MalI | GATC | 5 cut(s) | 29, 120, 396, 501, 769 |
| MboI | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| MboII | GAAGA | 6 cut(s) | 161, 368, 666, 715, 725, 758 |
| MfeI | CAATTG | 1 cut(s) | 405 |
| MhlI | GDGCHC | 1 cut(s) | 332 |
| MlsI | TGGCCA | 1 cut(s) | 719 |
| MluCI | AATT | 6 cut(s) | 405, 464, 474, 567, 662, 729 |
| MluNI | TGGCCA | 1 cut(s) | 719 |
| MlyI | GAGTC | 2 cut(s) | 383, 665 |
| MmeI | TCCRAC | 1 cut(s) | 636 |
| Mox20I | TGGCCA | 1 cut(s) | 719 |
| MscI | TGGCCA | 1 cut(s) | 719 |
| MseI | TTAA | 1 cut(s) | 462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 337 |
| Msp20I | TGGCCA | 1 cut(s) | 719 |
| MspA1I | CMGCKG | 1 cut(s) | 77 |
| MspI | CCGG | 1 cut(s) | 51 |
| MunI | CAATTG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NdeII | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| NlaIII | CATG | 1 cut(s) | 138 |
| NlaIV | GGNNCC | 1 cut(s) | 797 |
| NmeAIII | GCCGAG | 1 cut(s) | 559 |
| NmuCI | GTSAC | 2 cut(s) | 245, 386 |
| OliI | CACNNNNGTG | 1 cut(s) | 337 |
| PfeI | GAWTC | 5 cut(s) | 125, 163, 370, 470, 540 |
| PkrI | GCNGC | 2 cut(s) | 444, 829 |
| PleI | GAGTC | 2 cut(s) | 383, 665 |
| PpsI | GAGTC | 2 cut(s) | 383, 665 |
| Ppu21I | YACGTR | 2 cut(s) | 285, 647 |
| PspN4I | GGNNCC | 1 cut(s) | 797 |
| PspPI | GGNCC | 4 cut(s) | 19, 191, 256, 796 |
| PstNI | CAGNNNCTG | 1 cut(s) | 103 |
| PvuII | CAGCTG | 1 cut(s) | 77 |
| RsaI | GTAC | 1 cut(s) | 645 |
| RsaNI | GTAC | 1 cut(s) | 644 |
| RseI | CAYNNNNRTG | 1 cut(s) | 337 |
| SaqAI | TTAA | 1 cut(s) | 462 |
| SatI | GCNGC | 2 cut(s) | 443, 828 |
| Sau3AI | GATC | 5 cut(s) | 27, 118, 394, 499, 767 |
| Sau96I | GGNCC | 4 cut(s) | 19, 191, 256, 796 |
| SchI | GAGTC | 2 cut(s) | 383, 665 |
| SduI | GDGCHC | 1 cut(s) | 332 |
| SfaNI | GCATC | 2 cut(s) | 313, 624 |
| SinI | GGWCC | 3 cut(s) | 19, 256, 796 |
| SmiI | ATTTAAAT | 1 cut(s) | 463 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 337 |
| SpeI | ACTAGT | 1 cut(s) | 515 |
| Sse9I | AATT | 6 cut(s) | 405, 464, 474, 567, 662, 729 |
| SsiI | CCGC | 3 cut(s) | 442, 523, 799 |
| StyI | CCWWGG | 1 cut(s) | 259 |
| SwaI | ATTTAAAT | 1 cut(s) | 463 |
| TaaI | ACNGT | 5 cut(s) | 16, 35, 245, 336, 623 |
| TaiI | ACGT | 2 cut(s) | 287, 649 |
| TaqI | TCGA | 1 cut(s) | 457 |
| TaqII | GACCGA | 1 cut(s) | 96 |
| TasI | AATT | 6 cut(s) | 405, 464, 474, 567, 662, 729 |
| TauI | GCSGC | 1 cut(s) | 445 |
| TfiI | GAWTC | 5 cut(s) | 125, 163, 370, 470, 540 |
| Tru1I | TTAA | 1 cut(s) | 462 |
| Tru9I | TTAA | 1 cut(s) | 462 |
| TseFI | GTSAC | 2 cut(s) | 245, 386 |
| TseI | GCWGC | 1 cut(s) | 827 |
| Tsp45I | GTSAC | 2 cut(s) | 245, 386 |
| TspDTI | ATGAA | 1 cut(s) | 362 |
| VneI | GTGCAC | 1 cut(s) | 328 |
| VpaK11BI | GGWCC | 3 cut(s) | 19, 256, 796 |
| XapI | RAATTY | 2 cut(s) | 464, 729 |
| XmaJI | CCTAGG | 1 cut(s) | 259 |
| XmiI | GTMKAC | 1 cut(s) | 533 |