ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 977 |
| AccI | GTMKAC | 1 cut(s) | 631 |
| AccII | CGCG | 1 cut(s) | 810 |
| AciI | CCGC | 2 cut(s) | 4, 931 |
| AclWI | GGATC | 3 cut(s) | 378, 564, 1143 |
| AcsI | RAATTY | 2 cut(s) | 624, 875 |
| AfaI | GTAC | 4 cut(s) | 390, 478, 773, 862 |
| AfeI | AGCGCT | 1 cut(s) | 408 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 641, 951 |
| AgeI | ACCGGT | 1 cut(s) | 150 |
| AgsI | TTSAA | 4 cut(s) | 157, 164, 179, 671 |
| AluBI | AGCT | 7 cut(s) | 167, 425, 545, 836, 848, 872, 1154 |
| AluI | AGCT | 7 cut(s) | 167, 425, 545, 836, 848, 872, 1154 |
| Alw26I | GTCTC | 4 cut(s) | 313, 520, 566, 731 |
| AlwI | GGATC | 3 cut(s) | 378, 564, 1143 |
| Ama87I | CYCGRG | 2 cut(s) | 608, 692 |
| Aor51HI | AGCGCT | 1 cut(s) | 408 |
| AoxI | GGCC | 3 cut(s) | 393, 695, 1104 |
| ApeKI | GCWGC | 1 cut(s) | 584 |
| ApoI | RAATTY | 2 cut(s) | 624, 875 |
| AseI | ATTAAT | 1 cut(s) | 362 |
| AsiGI | ACCGGT | 1 cut(s) | 150 |
| AspLEI | GCGC | 3 cut(s) | 409, 801, 810 |
| AspS9I | GGNCC | 1 cut(s) | 695 |
| AsuHPI | GGTGA | 3 cut(s) | 124, 140, 597 |
| AsuII | TTCGAA | 1 cut(s) | 428 |
| AvaI | CYCGRG | 2 cut(s) | 608, 692 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 443, 476 |
| BanI | GGYRCC | 1 cut(s) | 977 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 409, 441 |
| BbsI | GAAGAC | 1 cut(s) | 215 |
| BbvI | GCAGC | 1 cut(s) | 571 |
| BccI | CCATC | 4 cut(s) | 37, 491, 695, 968 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 46, 80 |
| BciVI | GTATCC | 3 cut(s) | 298, 687, 948 |
| BcoDI | GTCTC | 4 cut(s) | 313, 520, 566, 731 |
| BfaI | CTAG | 5 cut(s) | 276, 353, 858, 1032, 1050 |
| BfoI | RGCGCY | 1 cut(s) | 410 |
| BfuI | GTATCC | 3 cut(s) | 298, 687, 948 |
| BisI | GCNGC | 1 cut(s) | 585 |
| BlpI | GCTNAGC | 1 cut(s) | 1086 |
| BlsI | GCNGC | 1 cut(s) | 586 |
| BmeT110I | CYCGRG | 2 cut(s) | 608, 692 |
| BmgT120I | GGNCC | 1 cut(s) | 695 |
| BmiI | GGNNCC | 2 cut(s) | 979, 1039 |
| BmrI | ACTGGG | 1 cut(s) | 742 |
| BmsI | GCATC | 1 cut(s) | 76 |
| BmuI | ACTGGG | 1 cut(s) | 742 |
| BpiI | GAAGAC | 1 cut(s) | 215 |
| Bpu10I | CCTNAGC | 2 cut(s) | 107, 1009 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1086 |
| Bpu14I | TTCGAA | 1 cut(s) | 428 |
| BpuEI | CTTGAG | 2 cut(s) | 816, 944 |
| BsaAI | YACGTR | 1 cut(s) | 480 |
| BsaBI | GATNNNNATC | 1 cut(s) | 87 |
| BsaI | GGTCTC | 1 cut(s) | 520 |
| BsaJI | CCNNGG | 1 cut(s) | 945 |
| BsaWI | WCCGGW | 1 cut(s) | 150 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 464, 494 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 641, 951 |
| Bse118I | RCCGGY | 1 cut(s) | 150 |
| Bse1I | ACTGG | 2 cut(s) | 238, 737 |
| Bse3DI | GCAATG | 1 cut(s) | 944 |
| Bse8I | GATNNNNATC | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 945 |
| BseGI | GGATG | 1 cut(s) | 706 |
| BseJI | GATNNNNATC | 1 cut(s) | 87 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 641, 951 |
| BseMI | GCAATG | 1 cut(s) | 944 |
| BseMII | CTCAG | 2 cut(s) | 393, 905 |
| BseNI | ACTGG | 2 cut(s) | 238, 737 |
| BseRI | GAGGAG | 3 cut(s) | 485, 662, 764 |
| BseXI | GCAGC | 1 cut(s) | 571 |
| Bsh1236I | CGCG | 1 cut(s) | 810 |
| BshFI | GGCC | 3 cut(s) | 395, 697, 1106 |
| BshNI | GGYRCC | 1 cut(s) | 977 |
| BshTI | ACCGGT | 1 cut(s) | 150 |
| BsiHKCI | CYCGRG | 2 cut(s) | 608, 692 |
| BsiSI | CCGG | 2 cut(s) | 151, 698 |
| BslFI | GGGAC | 2 cut(s) | 224, 927 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 641, 951 |
| BsmAI | GTCTC | 4 cut(s) | 313, 520, 566, 731 |
| BsmFI | GGGAC | 2 cut(s) | 224, 927 |
| BsnI | GGCC | 3 cut(s) | 395, 697, 1106 |
| Bso31I | GGTCTC | 1 cut(s) | 520 |
| BsoBI | CYCGRG | 2 cut(s) | 608, 692 |
| Bsp119I | TTCGAA | 1 cut(s) | 428 |
| Bsp1407I | TGTACA | 1 cut(s) | 388 |
| Bsp143I | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1086 |
| BspACI | CCGC | 2 cut(s) | 4, 931 |
| BspANI | GGCC | 3 cut(s) | 395, 697, 1106 |
| BspCNI | CTCAG | 2 cut(s) | 392, 906 |
| BspFNI | CGCG | 1 cut(s) | 810 |
| BspHI | TCATGA | 1 cut(s) | 559 |
| BspLI | GGNNCC | 2 cut(s) | 979, 1039 |
| BspPI | GGATC | 3 cut(s) | 378, 564, 1143 |
| BspT104I | TTCGAA | 1 cut(s) | 428 |
| BspT107I | GGYRCC | 1 cut(s) | 977 |
| BspTNI | GGTCTC | 1 cut(s) | 520 |
| BsrDI | GCAATG | 1 cut(s) | 944 |
| BsrFI | RCCGGY | 1 cut(s) | 150 |
| BsrGI | TGTACA | 1 cut(s) | 388 |
| BsrI | ACTGG | 2 cut(s) | 238, 737 |
| BssAI | RCCGGY | 1 cut(s) | 150 |
| BssECI | CCNNGG | 1 cut(s) | 945 |
| BssMI | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| BssT1I | CCWWGG | 1 cut(s) | 945 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 1120 |
| Bst6I | CTCTTC | 2 cut(s) | 523, 1071 |
| BstAUI | TGTACA | 1 cut(s) | 388 |
| BstBAI | YACGTR | 1 cut(s) | 480 |
| BstBI | TTCGAA | 1 cut(s) | 428 |
| BstC8I | GCNNGC | 3 cut(s) | 405, 1092, 1152 |
| BstDEI | CTNAG | 5 cut(s) | 107, 379, 914, 1009, 1086 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 949 |
| BstF5I | GGATG | 1 cut(s) | 706 |
| BstFNI | CGCG | 1 cut(s) | 810 |
| BstH2I | RGCGCY | 1 cut(s) | 410 |
| BstHHI | GCGC | 3 cut(s) | 409, 801, 810 |
| BstKTI | GATC | 5 cut(s) | 91, 267, 373, 559, 1138 |
| BstMAI | GTCTC | 4 cut(s) | 313, 520, 566, 731 |
| BstMBI | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 805, 807, 854, 1055, 1091, 1112 |
| BstNSI | RCATGY | 1 cut(s) | 1094 |
| BstUI | CGCG | 1 cut(s) | 810 |
| BstV1I | GCAGC | 1 cut(s) | 571 |
| BstV2I | GAAGAC | 1 cut(s) | 215 |
| BsuI | GTATCC | 3 cut(s) | 298, 687, 948 |
| BsuRI | GGCC | 3 cut(s) | 395, 697, 1106 |
| BtsCI | GGATG | 1 cut(s) | 706 |
| BtsIMutI | CAGTG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 3 cut(s) | 405, 1092, 1152 |
| CciI | TCATGA | 1 cut(s) | 559 |
| CfoI | GCGC | 3 cut(s) | 409, 801, 810 |
| Cfr10I | RCCGGY | 1 cut(s) | 150 |
| Cfr13I | GGNCC | 1 cut(s) | 695 |
| Csp6I | GTAC | 4 cut(s) | 389, 477, 772, 861 |
| CspAI | ACCGGT | 1 cut(s) | 150 |
| CviAII | CATG | 5 cut(s) | 331, 560, 1042, 1091, 1144 |
| CviQI | GTAC | 4 cut(s) | 389, 477, 772, 861 |
| DdeI | CTNAG | 5 cut(s) | 107, 379, 914, 1009, 1086 |
| DpnI | GATC | 5 cut(s) | 90, 266, 372, 558, 1137 |
| DpnII | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| Eam1104I | CTCTTC | 2 cut(s) | 523, 1071 |
| EarI | CTCTTC | 2 cut(s) | 523, 1071 |
| Eco130I | CCWWGG | 1 cut(s) | 945 |
| Eco31I | GGTCTC | 1 cut(s) | 520 |
| Eco47III | AGCGCT | 1 cut(s) | 408 |
| Eco88I | CYCGRG | 2 cut(s) | 608, 692 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 949 |
| EcoRI | GAATTC | 1 cut(s) | 875 |
| EcoT14I | CCWWGG | 1 cut(s) | 945 |
| ErhI | CCWWGG | 1 cut(s) | 945 |
| FaeI | CATG | 5 cut(s) | 334, 563, 1045, 1094, 1147 |
| FaqI | GGGAC | 2 cut(s) | 224, 927 |
| FatI | CATG | 5 cut(s) | 330, 559, 1041, 1090, 1143 |
| FblI | GTMKAC | 1 cut(s) | 631 |
| Fnu4HI | GCNGC | 1 cut(s) | 585 |
| FokI | GGATG | 1 cut(s) | 713 |
| Fsp4HI | GCNGC | 1 cut(s) | 585 |
| FspBI | CTAG | 5 cut(s) | 276, 353, 858, 1032, 1050 |
| GlaI | GCGC | 3 cut(s) | 408, 800, 809 |
| GluI | GCNGC | 1 cut(s) | 585 |
| HaeII | RGCGCY | 1 cut(s) | 410 |
| HaeIII | GGCC | 3 cut(s) | 395, 697, 1106 |
| HapII | CCGG | 2 cut(s) | 151, 698 |
| HhaI | GCGC | 3 cut(s) | 409, 801, 810 |
| Hin1II | CATG | 5 cut(s) | 334, 563, 1045, 1094, 1147 |
| Hin6I | GCGC | 3 cut(s) | 407, 799, 808 |
| HinP1I | GCGC | 3 cut(s) | 407, 799, 808 |
| HindIII | AAGCTT | 3 cut(s) | 165, 423, 834 |
| HinfI | GANTC | 3 cut(s) | 83, 445, 1028 |
| HpaII | CCGG | 2 cut(s) | 151, 698 |
| HphI | GGTGA | 3 cut(s) | 124, 140, 597 |
| Hpy166II | GTNNAC | 4 cut(s) | 115, 389, 632, 886 |
| Hpy188I | TCNGA | 5 cut(s) | 88, 450, 550, 841, 915 |
| Hpy188III | TCNNGA | 3 cut(s) | 560, 642, 1133 |
| Hpy8I | GTNNAC | 4 cut(s) | 115, 389, 632, 886 |
| HpyAV | CCTTC | 4 cut(s) | 52, 295, 787, 991 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 1120 |
| HpyCH4IV | ACGT | 2 cut(s) | 439, 479 |
| HpyCH4V | TGCA | 3 cut(s) | 67, 587, 1094 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 805, 807, 854, 1055, 1091, 1112 |
| HpyF3I | CTNAG | 5 cut(s) | 107, 379, 914, 1009, 1086 |
| HpySE526I | ACGT | 2 cut(s) | 439, 479 |
| Hsp92II | CATG | 5 cut(s) | 334, 563, 1045, 1094, 1147 |
| HspAI | GCGC | 3 cut(s) | 407, 799, 808 |
| Kzo9I | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| LmnI | GCTCC | 1 cut(s) | 796 |
| Lsp1109I | GCAGC | 1 cut(s) | 571 |
| LweI | GCATC | 1 cut(s) | 76 |
| MaeI | CTAG | 5 cut(s) | 276, 353, 858, 1032, 1050 |
| MaeII | ACGT | 2 cut(s) | 439, 479 |
| MaeIII | GTNAC | 3 cut(s) | 229, 253, 917 |
| MalI | GATC | 5 cut(s) | 90, 266, 372, 558, 1137 |
| MboI | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| MboII | GAAGA | 6 cut(s) | 220, 274, 368, 500, 510, 1058 |
| MluCI | AATT | 7 cut(s) | 187, 196, 339, 359, 624, 686, 875 |
| MmeI | TCCRAC | 3 cut(s) | 483, 534, 748 |
| MseI | TTAA | 3 cut(s) | 362, 654, 966 |
| MspA1I | CMGCKG | 1 cut(s) | 1154 |
| MspI | CCGG | 2 cut(s) | 151, 698 |
| MvnI | CGCG | 1 cut(s) | 810 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 805, 807, 854, 1055, 1091, 1112 |
| NdeII | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| NlaIII | CATG | 5 cut(s) | 334, 563, 1045, 1094, 1147 |
| NlaIV | GGNNCC | 2 cut(s) | 979, 1039 |
| NmuCI | GTSAC | 1 cut(s) | 917 |
| NspI | RCATGY | 1 cut(s) | 1094 |
| NspV | TTCGAA | 1 cut(s) | 428 |
| PaeI | GCATGC | 1 cut(s) | 1094 |
| PagI | TCATGA | 1 cut(s) | 559 |
| PfeI | GAWTC | 3 cut(s) | 83, 445, 1028 |
| PinAI | ACCGGT | 1 cut(s) | 150 |
| PkrI | GCNGC | 1 cut(s) | 586 |
| Ppu21I | YACGTR | 1 cut(s) | 480 |
| PshBI | ATTAAT | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 2 cut(s) | 979, 1039 |
| PspPI | GGNCC | 1 cut(s) | 695 |
| PvuII | CAGCTG | 1 cut(s) | 1154 |
| RsaI | GTAC | 4 cut(s) | 390, 478, 773, 862 |
| RsaNI | GTAC | 4 cut(s) | 389, 477, 772, 861 |
| SaqAI | TTAA | 3 cut(s) | 362, 654, 966 |
| SatI | GCNGC | 1 cut(s) | 585 |
| Sau3AI | GATC | 5 cut(s) | 88, 264, 370, 556, 1135 |
| Sau96I | GGNCC | 1 cut(s) | 695 |
| SfaNI | GCATC | 1 cut(s) | 76 |
| SfuI | TTCGAA | 1 cut(s) | 428 |
| SmlI | CTYRAG | 2 cut(s) | 831, 959 |
| SmoI | CTYRAG | 2 cut(s) | 831, 959 |
| SphI | GCATGC | 1 cut(s) | 1094 |
| Sse9I | AATT | 7 cut(s) | 187, 196, 339, 359, 624, 686, 875 |
| SsiI | CCGC | 2 cut(s) | 4, 931 |
| SspMI | CTAG | 5 cut(s) | 276, 353, 858, 1032, 1050 |
| StyI | CCWWGG | 1 cut(s) | 945 |
| TaaI | ACNGT | 2 cut(s) | 121, 1120 |
| TaiI | ACGT | 2 cut(s) | 442, 482 |
| TaqI | TCGA | 1 cut(s) | 428 |
| TasI | AATT | 7 cut(s) | 187, 196, 339, 359, 624, 686, 875 |
| TatI | WGTACW | 3 cut(s) | 388, 771, 860 |
| TfiI | GAWTC | 3 cut(s) | 83, 445, 1028 |
| Tru1I | TTAA | 3 cut(s) | 362, 654, 966 |
| Tru9I | TTAA | 3 cut(s) | 362, 654, 966 |
| TscAI | CASTG | 1 cut(s) | 229 |
| TseFI | GTSAC | 1 cut(s) | 917 |
| TseI | GCWGC | 1 cut(s) | 584 |
| Tsp45I | GTSAC | 1 cut(s) | 917 |
| TspDTI | ATGAA | 3 cut(s) | 510, 629, 1160 |
| TspGWI | ACGGA | 3 cut(s) | 151, 302, 869 |
| TspRI | CASTG | 1 cut(s) | 229 |
| VspI | ATTAAT | 1 cut(s) | 362 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 949 |
| XapI | RAATTY | 2 cut(s) | 624, 875 |
| XceI | RCATGY | 1 cut(s) | 1094 |
| XmiI | GTMKAC | 1 cut(s) | 631 |
| XspI | CTAG | 5 cut(s) | 276, 353, 858, 1032, 1050 |