ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 367 |
| AciI | CCGC | 1 cut(s) | 170 |
| AclI | AACGTT | 1 cut(s) | 238 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AfaI | GTAC | 2 cut(s) | 227, 284 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AflIII | ACRYGT | 1 cut(s) | 50 |
| AgsI | TTSAA | 2 cut(s) | 64, 110 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 223, 255 |
| AluBI | AGCT | 1 cut(s) | 299 |
| AluI | AGCT | 1 cut(s) | 299 |
| Alw21I | GWGCWC | 1 cut(s) | 508 |
| Alw26I | GTCTC | 1 cut(s) | 338 |
| Alw44I | GTGCAC | 1 cut(s) | 504 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 136 |
| Aor13HI | TCCGGA | 1 cut(s) | 367 |
| AoxI | GGCC | 2 cut(s) | 14, 97 |
| ApaLI | GTGCAC | 1 cut(s) | 504 |
| ApeKI | GCWGC | 1 cut(s) | 533 |
| AspA2I | CCTAGG | 1 cut(s) | 470 |
| AspS9I | GGNCC | 1 cut(s) | 142 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 2 cut(s) | 278, 487 |
| AsuII | TTCGAA | 1 cut(s) | 242 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| AvrII | CCTAGG | 1 cut(s) | 470 |
| BaeGI | GKGCMC | 1 cut(s) | 508 |
| Bbv12I | GWGCWC | 1 cut(s) | 508 |
| BbvI | GCAGC | 1 cut(s) | 520 |
| BccI | CCATC | 2 cut(s) | 194, 257 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 1 cut(s) | 338 |
| BfaI | CTAG | 4 cut(s) | 123, 326, 471, 544 |
| BfmI | CTRYAG | 1 cut(s) | 516 |
| BisI | GCNGC | 1 cut(s) | 534 |
| BlnI | CCTAGG | 1 cut(s) | 470 |
| BlsI | GCNGC | 1 cut(s) | 535 |
| BmcAI | AGTACT | 1 cut(s) | 284 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmgT120I | GGNCC | 1 cut(s) | 142 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BmsI | GCATC | 1 cut(s) | 384 |
| Bpu14I | TTCGAA | 1 cut(s) | 242 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaI | GGTCTC | 1 cut(s) | 338 |
| BsaJI | CCNNGG | 1 cut(s) | 470 |
| BsaWI | WCCGGW | 1 cut(s) | 367 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse118I | RCCGGY | 1 cut(s) | 321 |
| Bse1I | ACTGG | 1 cut(s) | 233 |
| BseAI | TCCGGA | 1 cut(s) | 367 |
| BseDI | CCNNGG | 1 cut(s) | 470 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseMII | CTCAG | 2 cut(s) | 147, 494 |
| BseNI | ACTGG | 1 cut(s) | 233 |
| BseSI | GKGCMC | 1 cut(s) | 508 |
| BseXI | GCAGC | 1 cut(s) | 520 |
| BshFI | GGCC | 2 cut(s) | 16, 99 |
| BsiHKAI | GWGCWC | 1 cut(s) | 508 |
| BsiSI | CCGG | 3 cut(s) | 100, 322, 368 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsmAI | GTCTC | 1 cut(s) | 338 |
| BsnI | GGCC | 2 cut(s) | 16, 99 |
| Bso31I | GGTCTC | 1 cut(s) | 338 |
| Bsp119I | TTCGAA | 1 cut(s) | 242 |
| Bsp1286I | GDGCHC | 1 cut(s) | 508 |
| Bsp13I | TCCGGA | 1 cut(s) | 367 |
| BspACI | CCGC | 1 cut(s) | 170 |
| BspANI | GGCC | 2 cut(s) | 16, 99 |
| BspCNI | CTCAG | 2 cut(s) | 148, 493 |
| BspEI | TCCGGA | 1 cut(s) | 367 |
| BspMAI | CTGCAG | 1 cut(s) | 520 |
| BspQI | GCTCTTC | 1 cut(s) | 427 |
| BspT104I | TTCGAA | 1 cut(s) | 242 |
| BspTNI | GGTCTC | 1 cut(s) | 338 |
| BsrFI | RCCGGY | 1 cut(s) | 321 |
| BsrI | ACTGG | 1 cut(s) | 233 |
| BssAI | RCCGGY | 1 cut(s) | 321 |
| BssECI | CCNNGG | 1 cut(s) | 470 |
| BssT1I | CCWWGG | 1 cut(s) | 470 |
| Bst4CI | ACNGT | 2 cut(s) | 440, 510 |
| Bst6I | CTCTTC | 1 cut(s) | 427 |
| BstBI | TTCGAA | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 4 cut(s) | 156, 279, 315, 480 |
| BstMAI | GTCTC | 1 cut(s) | 338 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 167 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BstSFI | CTRYAG | 1 cut(s) | 516 |
| BstSLI | GKGCMC | 1 cut(s) | 508 |
| BstV1I | GCAGC | 1 cut(s) | 520 |
| BsuRI | GGCC | 2 cut(s) | 16, 99 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| CaiI | CAGNNNCTG | 1 cut(s) | 136 |
| Cfr10I | RCCGGY | 1 cut(s) | 321 |
| Cfr13I | GGNCC | 1 cut(s) | 142 |
| Csp6I | GTAC | 2 cut(s) | 226, 283 |
| CviAII | CATG | 3 cut(s) | 212, 252, 446 |
| CviQI | GTAC | 2 cut(s) | 226, 283 |
| DdeI | CTNAG | 4 cut(s) | 156, 279, 315, 480 |
| Eam1104I | CTCTTC | 1 cut(s) | 427 |
| EarI | CTCTTC | 1 cut(s) | 427 |
| EciI | GGCGGA | 1 cut(s) | 185 |
| Eco130I | CCWWGG | 1 cut(s) | 470 |
| Eco31I | GGTCTC | 1 cut(s) | 338 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| EcoT14I | CCWWGG | 1 cut(s) | 470 |
| ErhI | CCWWGG | 1 cut(s) | 470 |
| FaeI | CATG | 3 cut(s) | 215, 255, 449 |
| FaiI | YATR | 7 cut(s) | 213, 222, 253, 291, 447, 464, 488 |
| FatI | CATG | 3 cut(s) | 211, 251, 445 |
| Fnu4HI | GCNGC | 1 cut(s) | 534 |
| Fsp4HI | GCNGC | 1 cut(s) | 534 |
| FspBI | CTAG | 4 cut(s) | 123, 326, 471, 544 |
| GluI | GCNGC | 1 cut(s) | 534 |
| HaeIII | GGCC | 2 cut(s) | 16, 99 |
| HapII | CCGG | 3 cut(s) | 100, 322, 368 |
| Hin1II | CATG | 3 cut(s) | 215, 255, 449 |
| HindIII | AAGCTT | 1 cut(s) | 297 |
| HinfI | GANTC | 2 cut(s) | 478, 494 |
| HpaII | CCGG | 3 cut(s) | 100, 322, 368 |
| HphI | GGTGA | 2 cut(s) | 278, 487 |
| Hpy166II | GTNNAC | 2 cut(s) | 226, 506 |
| Hpy188I | TCNGA | 3 cut(s) | 262, 416, 430 |
| Hpy188III | TCNNGA | 2 cut(s) | 368, 482 |
| Hpy8I | GTNNAC | 2 cut(s) | 226, 506 |
| HpyAV | CCTTC | 2 cut(s) | 160, 238 |
| HpyCH4III | ACNGT | 2 cut(s) | 440, 510 |
| HpyCH4IV | ACGT | 2 cut(s) | 52, 238 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 211, 445, 506, 518 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 167 |
| HpyF3I | CTNAG | 4 cut(s) | 156, 279, 315, 480 |
| HpySE526I | ACGT | 2 cut(s) | 52, 238 |
| Hsp92II | CATG | 3 cut(s) | 215, 255, 449 |
| Kpn2I | TCCGGA | 1 cut(s) | 367 |
| LguI | GCTCTTC | 1 cut(s) | 427 |
| Lsp1109I | GCAGC | 1 cut(s) | 520 |
| LweI | GCATC | 1 cut(s) | 384 |
| MaeI | CTAG | 4 cut(s) | 123, 326, 471, 544 |
| MaeII | ACGT | 2 cut(s) | 52, 238 |
| MaeIII | GTNAC | 2 cut(s) | 266, 475 |
| MboII | GAAGA | 2 cut(s) | 414, 417 |
| MfeI | CAATTG | 1 cut(s) | 67 |
| MhlI | GDGCHC | 1 cut(s) | 508 |
| MluCI | AATT | 2 cut(s) | 67, 110 |
| MlyI | GAGTC | 2 cut(s) | 472, 503 |
| MmeI | TCCRAC | 1 cut(s) | 120 |
| MnlI | CCTC | 8 cut(s) | 27, 89, 111, 151, 364, 373, 373, 410 |
| MroI | TCCGGA | 1 cut(s) | 367 |
| MseI | TTAA | 1 cut(s) | 456 |
| MspI | CCGG | 3 cut(s) | 100, 322, 368 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MunI | CAATTG | 1 cut(s) | 67 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 167 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NlaIII | CATG | 3 cut(s) | 215, 255, 449 |
| NmuCI | GTSAC | 2 cut(s) | 266, 475 |
| NspV | TTCGAA | 1 cut(s) | 242 |
| PciSI | GCTCTTC | 1 cut(s) | 427 |
| PkrI | GCNGC | 1 cut(s) | 535 |
| PleI | GAGTC | 2 cut(s) | 472, 502 |
| PpsI | GAGTC | 2 cut(s) | 472, 502 |
| Psp1406I | AACGTT | 1 cut(s) | 238 |
| PspPI | GGNCC | 1 cut(s) | 142 |
| PstI | CTGCAG | 1 cut(s) | 520 |
| PstNI | CAGNNNCTG | 1 cut(s) | 136 |
| RsaI | GTAC | 2 cut(s) | 227, 284 |
| RsaNI | GTAC | 2 cut(s) | 226, 283 |
| SapI | GCTCTTC | 1 cut(s) | 427 |
| SaqAI | TTAA | 1 cut(s) | 456 |
| SatI | GCNGC | 1 cut(s) | 534 |
| Sau96I | GGNCC | 1 cut(s) | 142 |
| ScaI | AGTACT | 1 cut(s) | 284 |
| SchI | GAGTC | 2 cut(s) | 472, 503 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SduI | GDGCHC | 1 cut(s) | 508 |
| SetI | ASST | 4 cut(s) | 55, 241, 249, 301 |
| SfaNI | GCATC | 1 cut(s) | 384 |
| SfcI | CTRYAG | 1 cut(s) | 516 |
| SfuI | TTCGAA | 1 cut(s) | 242 |
| SinI | GGWCC | 1 cut(s) | 142 |
| Sse9I | AATT | 2 cut(s) | 67, 110 |
| SsiI | CCGC | 1 cut(s) | 170 |
| SspMI | CTAG | 4 cut(s) | 123, 326, 471, 544 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| StyI | CCWWGG | 1 cut(s) | 470 |
| TaaI | ACNGT | 2 cut(s) | 440, 510 |
| TaiI | ACGT | 2 cut(s) | 55, 241 |
| TaqI | TCGA | 3 cut(s) | 94, 242, 378 |
| TasI | AATT | 2 cut(s) | 67, 110 |
| TatI | WGTACW | 2 cut(s) | 225, 282 |
| Tru1I | TTAA | 1 cut(s) | 456 |
| Tru9I | TTAA | 1 cut(s) | 456 |
| TscAI | CASTG | 1 cut(s) | 160 |
| TseFI | GTSAC | 2 cut(s) | 266, 475 |
| TseI | GCWGC | 1 cut(s) | 533 |
| Tsp45I | GTSAC | 2 cut(s) | 266, 475 |
| TspDTI | ATGAA | 3 cut(s) | 278, 503, 537 |
| TspRI | CASTG | 1 cut(s) | 160 |
| VneI | GTGCAC | 1 cut(s) | 504 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XmaJI | CCTAGG | 1 cut(s) | 470 |
| XspI | CTAG | 4 cut(s) | 123, 326, 471, 544 |
| ZrmI | AGTACT | 1 cut(s) | 284 |