Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 942 |
| Acc36I | ACCTGC | 1 cut(s) | 976 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1556 |
| AciI | CCGC | 1 cut(s) | 94 |
| AclWI | GGATC | 2 cut(s) | 214, 1895 |
| AcsI | RAATTY | 2 cut(s) | 784, 1401 |
| AcuI | CTGAAG | 1 cut(s) | 1976 |
| AdeI | CACNNNGTG | 1 cut(s) | 1607 |
| AfaI | GTAC | 2 cut(s) | 1207, 1334 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 360, 622, 1181, 1556 |
| AjnI | CCWGG | 1 cut(s) | 420 |
| AleI | CACNNNNGTG | 1 cut(s) | 137 |
| AluBI | AGCT | 8 cut(s) | 113, 671, 845, 885, 1235, 1430, 1539, 1817 |
| AluI | AGCT | 8 cut(s) | 113, 671, 845, 885, 1235, 1430, 1539, 1817 |
| Alw21I | GWGCWC | 3 cut(s) | 144, 1111, 1141 |
| Alw26I | GTCTC | 3 cut(s) | 446, 864, 1514 |
| AlwI | GGATC | 2 cut(s) | 214, 1895 |
| AoxI | GGCC | 3 cut(s) | 164, 290, 425 |
| ApeKI | GCWGC | 1 cut(s) | 1241 |
| ApoI | RAATTY | 2 cut(s) | 784, 1401 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 12 |
| AspA2I | CCTAGG | 1 cut(s) | 73 |
| AspLEI | GCGC | 1 cut(s) | 1672 |
| AspS9I | GGNCC | 3 cut(s) | 164, 248, 425 |
| AsuC2I | CCSGG | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 3 cut(s) | 862, 965, 1158 |
| AsuII | TTCGAA | 1 cut(s) | 1121 |
| AsuNHI | GCTAGC | 3 cut(s) | 109, 572, 1535 |
| AvaII | GGWCC | 1 cut(s) | 248 |
| AvrII | CCTAGG | 1 cut(s) | 73 |
| BbsI | GAAGAC | 1 cut(s) | 1843 |
| Bbv12I | GWGCWC | 3 cut(s) | 144, 1111, 1141 |
| BbvCI | CCTCAGC | 1 cut(s) | 1221 |
| BbvI | GCAGC | 1 cut(s) | 1228 |
| BccI | CCATC | 9 cut(s) | 236, 587, 612, 860, 1172, 1454, 1574, 1818, 1924 |
| BceAI | ACGGC | 1 cut(s) | 1891 |
| BciT130I | CCWGG | 1 cut(s) | 422 |
| BciVI | GTATCC | 1 cut(s) | 1164 |
| BclI | TGATCA | 1 cut(s) | 547 |
| BcnI | CCSGG | 1 cut(s) | 168 |
| BcoDI | GTCTC | 3 cut(s) | 446, 864, 1514 |
| BfmI | CTRYAG | 3 cut(s) | 763, 1020, 1230 |
| BfuAI | ACCTGC | 1 cut(s) | 976 |
| BfuI | GTATCC | 1 cut(s) | 1164 |
| BglII | AGATCT | 4 cut(s) | 64, 343, 387, 1904 |
| BisI | GCNGC | 1 cut(s) | 1242 |
| BlnI | CCTAGG | 1 cut(s) | 73 |
| BlpI | GCTNAGC | 1 cut(s) | 1692 |
| BlsI | GCNGC | 1 cut(s) | 1243 |
| Bme1390I | CCNGG | 2 cut(s) | 168, 422 |
| Bme18I | GGWCC | 1 cut(s) | 248 |
| BmgT120I | GGNCC | 3 cut(s) | 164, 248, 425 |
| BmiI | GGNNCC | 2 cut(s) | 426, 696 |
| BmrFI | CCNGG | 2 cut(s) | 168, 422 |
| BmrI | ACTGGG | 1 cut(s) | 62 |
| BmsI | GCATC | 2 cut(s) | 1216, 1765 |
| BmtI | GCTAGC | 3 cut(s) | 113, 576, 1539 |
| BmuI | ACTGGG | 1 cut(s) | 62 |
| BpiI | GAAGAC | 1 cut(s) | 1843 |
| Bpu10I | CCTNAGC | 3 cut(s) | 516, 846, 1221 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1692 |
| Bpu14I | TTCGAA | 1 cut(s) | 1121 |
| BpuMI | CCSGG | 1 cut(s) | 168 |
| BsaBI | GATNNNNATC | 1 cut(s) | 211 |
| BsaJI | CCNNGG | 3 cut(s) | 73, 359, 421 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 360, 622, 1181, 1556 |
| Bse1I | ACTGG | 3 cut(s) | 57, 280, 635 |
| Bse3DI | GCAATG | 1 cut(s) | 658 |
| Bse8I | GATNNNNATC | 1 cut(s) | 211 |
| BseBI | CCWGG | 1 cut(s) | 422 |
| BseDI | CCNNGG | 3 cut(s) | 73, 359, 421 |
| BseGI | GGATG | 3 cut(s) | 579, 1231, 1585 |
| BseJI | GATNNNNATC | 1 cut(s) | 211 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 360, 622, 1181, 1556 |
| BseMI | GCAATG | 1 cut(s) | 658 |
| BseMII | CTCAG | 6 cut(s) | 157, 462, 1124, 1212, 1518, 1683 |
| BseNI | ACTGG | 3 cut(s) | 57, 280, 635 |
| BseXI | GCAGC | 1 cut(s) | 1228 |
| BsgI | GTGCAG | 1 cut(s) | 53 |
| BshFI | GGCC | 3 cut(s) | 166, 292, 427 |
| BsiHKAI | GWGCWC | 3 cut(s) | 144, 1111, 1141 |
| BsiSI | CCGG | 1 cut(s) | 167 |
| BslFI | GGGAC | 2 cut(s) | 323, 1646 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 360, 622, 1181, 1556 |
| BsmAI | GTCTC | 3 cut(s) | 446, 864, 1514 |
| BsmBI | CGTCTC | 1 cut(s) | 1514 |
| BsmFI | GGGAC | 2 cut(s) | 323, 1646 |
| BsmI | GAATGC | 1 cut(s) | 1066 |
| BsnI | GGCC | 3 cut(s) | 166, 292, 427 |
| Bsp119I | TTCGAA | 1 cut(s) | 1121 |
| Bsp1286I | GDGCHC | 3 cut(s) | 144, 1111, 1141 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1692 |
| BspACI | CCGC | 1 cut(s) | 94 |
| BspANI | GGCC | 3 cut(s) | 166, 292, 427 |
| BspCNI | CTCAG | 6 cut(s) | 156, 461, 1123, 1213, 1517, 1684 |
| BspHI | TCATGA | 1 cut(s) | 1261 |
| BspLI | GGNNCC | 2 cut(s) | 426, 696 |
| BspMAI | CTGCAG | 2 cut(s) | 767, 1024 |
| BspMI | ACCTGC | 1 cut(s) | 976 |
| BspOI | GCTAGC | 3 cut(s) | 113, 576, 1539 |
| BspPI | GGATC | 2 cut(s) | 214, 1895 |
| BspT104I | TTCGAA | 1 cut(s) | 1121 |
| BsrDI | GCAATG | 1 cut(s) | 658 |
| BsrI | ACTGG | 3 cut(s) | 57, 280, 635 |
| BssECI | CCNNGG | 3 cut(s) | 73, 359, 421 |
| BssT1I | CCWWGG | 2 cut(s) | 73, 359 |
| Bst2UI | CCWGG | 1 cut(s) | 422 |
| Bst4CI | ACNGT | 4 cut(s) | 1378, 1462, 1486, 1607 |
| Bst6I | CTCTTC | 2 cut(s) | 1292, 1510 |
| BstBI | TTCGAA | 1 cut(s) | 1121 |
| BstC8I | GCNNGC | 8 cut(s) | 111, 429, 574, 1107, 1537, 1668, 1714, 1758 |
| BstDEI | CTNAG | 9 cut(s) | 143, 448, 516, 846, 1110, 1221, 1431, 1504, 1692 |
| BstF5I | GGATG | 3 cut(s) | 579, 1231, 1585 |
| BstHHI | GCGC | 1 cut(s) | 1672 |
| BstMAI | GTCTC | 3 cut(s) | 446, 864, 1514 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1226, 1241, 1676 |
| BstNI | CCWGG | 1 cut(s) | 422 |
| BstNSI | RCATGY | 4 cut(s) | 175, 1015, 1700, 1716 |
| BstSCI | CCNGG | 2 cut(s) | 166, 420 |
| BstSFI | CTRYAG | 3 cut(s) | 763, 1020, 1230 |
| BstV1I | GCAGC | 1 cut(s) | 1228 |
| BstV2I | GAAGAC | 1 cut(s) | 1843 |
| BstX2I | RGATCY | 4 cut(s) | 64, 343, 387, 1904 |
| BstYI | RGATCY | 4 cut(s) | 64, 343, 387, 1904 |
| BsuI | GTATCC | 1 cut(s) | 1164 |
| BsuRI | GGCC | 3 cut(s) | 166, 292, 427 |
| BtgZI | GCGATG | 1 cut(s) | 878 |
| BtsCI | GGATG | 3 cut(s) | 579, 1231, 1585 |
| BtsIMutI | CAGTG | 2 cut(s) | 151, 1612 |
| BveI | ACCTGC | 1 cut(s) | 976 |
| Cac8I | GCNNGC | 8 cut(s) | 111, 429, 574, 1107, 1537, 1668, 1714, 1758 |
| CciI | TCATGA | 1 cut(s) | 1261 |
| CfoI | GCGC | 1 cut(s) | 1672 |
| Cfr13I | GGNCC | 3 cut(s) | 164, 248, 425 |
| Csp6I | GTAC | 2 cut(s) | 1206, 1333 |
| CviQI | GTAC | 2 cut(s) | 1206, 1333 |
| DdeI | CTNAG | 9 cut(s) | 143, 448, 516, 846, 1110, 1221, 1431, 1504, 1692 |
| DraIII | CACNNNGTG | 1 cut(s) | 1607 |
| Eam1104I | CTCTTC | 2 cut(s) | 1292, 1510 |
| EarI | CTCTTC | 2 cut(s) | 1292, 1510 |
| Eco130I | CCWWGG | 2 cut(s) | 73, 359 |
| Eco32I | GATATC | 1 cut(s) | 502 |
| Eco47I | GGWCC | 1 cut(s) | 248 |
| Eco57I | CTGAAG | 1 cut(s) | 1976 |
| EcoO109I | RGGNCCY | 2 cut(s) | 248, 425 |
| EcoRII | CCWGG | 1 cut(s) | 420 |
| EcoRV | GATATC | 1 cut(s) | 502 |
| EcoT14I | CCWWGG | 2 cut(s) | 73, 359 |
| EcoT22I | ATGCAT | 1 cut(s) | 1896 |
| ErhI | CCWWGG | 2 cut(s) | 73, 359 |
| Esp3I | CGTCTC | 1 cut(s) | 1514 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1806, 1838 |
| FaqI | GGGAC | 2 cut(s) | 323, 1646 |
| FbaI | TGATCA | 1 cut(s) | 547 |
| Fnu4HI | GCNGC | 1 cut(s) | 1242 |
| FokI | GGATG | 3 cut(s) | 566, 1238, 1592 |
| Fsp4HI | GCNGC | 1 cut(s) | 1242 |
| GlaI | GCGC | 1 cut(s) | 1671 |
| GluI | GCNGC | 1 cut(s) | 1242 |
| HaeIII | GGCC | 3 cut(s) | 166, 292, 427 |
| HapII | CCGG | 1 cut(s) | 167 |
| HhaI | GCGC | 1 cut(s) | 1672 |
| Hin6I | GCGC | 1 cut(s) | 1670 |
| HinP1I | GCGC | 1 cut(s) | 1670 |
| HincII | GTYRAC | 2 cut(s) | 273, 1414 |
| HindII | GTYRAC | 2 cut(s) | 273, 1414 |
| HinfI | GANTC | 6 cut(s) | 350, 454, 542, 612, 1435, 1864 |
| HpaI | GTTAAC | 1 cut(s) | 1414 |
| HpaII | CCGG | 1 cut(s) | 167 |
| HphI | GGTGA | 3 cut(s) | 862, 965, 1158 |
| Hpy166II | GTNNAC | 4 cut(s) | 273, 678, 1017, 1414 |
| Hpy188I | TCNGA | 9 cut(s) | 7, 297, 304, 451, 547, 912, 1149, 1929, 1995 |
| Hpy188III | TCNNGA | 9 cut(s) | 235, 347, 391, 863, 1175, 1262, 1456, 1596, 1868 |
| Hpy8I | GTNNAC | 4 cut(s) | 273, 678, 1017, 1414 |
| HpyAV | CCTTC | 5 cut(s) | 261, 325, 403, 1266, 1402 |
| HpyCH4III | ACNGT | 4 cut(s) | 1378, 1462, 1486, 1607 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1226, 1241, 1676 |
| HpyF3I | CTNAG | 9 cut(s) | 143, 448, 516, 846, 1110, 1221, 1431, 1504, 1692 |
| HspAI | GCGC | 1 cut(s) | 1670 |
| Ksp22I | TGATCA | 1 cut(s) | 547 |
| KspAI | GTTAAC | 1 cut(s) | 1414 |
| LmnI | GCTCC | 3 cut(s) | 668, 982, 1427 |
| Lsp1109I | GCAGC | 1 cut(s) | 1228 |
| LweI | GCATC | 2 cut(s) | 1216, 1765 |
| MaeIII | GTNAC | 7 cut(s) | 482, 509, 539, 685, 850, 1267, 1456 |
| MfeI | CAATTG | 3 cut(s) | 20, 323, 458 |
| MflI | RGATCY | 4 cut(s) | 64, 343, 387, 1904 |
| MhlI | GDGCHC | 3 cut(s) | 144, 1111, 1141 |
| MluCI | AATT | 9 cut(s) | 20, 152, 323, 458, 784, 1200, 1401, 1636, 1747 |
| MlyI | GAGTC | 2 cut(s) | 448, 536 |
| MmeI | TCCRAC | 4 cut(s) | 245, 320, 473, 1513 |
| Mph1103I | ATGCAT | 1 cut(s) | 1896 |
| MroXI | GAANNNNTTC | 1 cut(s) | 12 |
| MseI | TTAA | 6 cut(s) | 381, 930, 1199, 1317, 1413, 1799 |
| MslI | CAYNNNNRTG | 1 cut(s) | 137 |
| MspI | CCGG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 2 cut(s) | 168, 422 |
| MunI | CAATTG | 3 cut(s) | 20, 323, 458 |
| Mva1269I | GAATGC | 1 cut(s) | 1066 |
| MvaI | CCWGG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1226, 1241, 1676 |
| NciI | CCSGG | 1 cut(s) | 168 |
| NheI | GCTAGC | 3 cut(s) | 109, 572, 1535 |
| NlaIV | GGNNCC | 2 cut(s) | 426, 696 |
| NmuCI | GTSAC | 5 cut(s) | 509, 539, 850, 1267, 1456 |
| NsiI | ATGCAT | 1 cut(s) | 1896 |
| NspI | RCATGY | 4 cut(s) | 175, 1015, 1700, 1716 |
| NspV | TTCGAA | 1 cut(s) | 1121 |
| OliI | CACNNNNGTG | 1 cut(s) | 137 |
| PaeI | GCATGC | 1 cut(s) | 1716 |
| PagI | TCATGA | 1 cut(s) | 1261 |
| PctI | GAATGC | 1 cut(s) | 1066 |
| PdmI | GAANNNNTTC | 1 cut(s) | 12 |
| PfeI | GAWTC | 4 cut(s) | 350, 612, 1435, 1864 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1556 |
| PkrI | GCNGC | 1 cut(s) | 1243 |
| PleI | GAGTC | 2 cut(s) | 448, 536 |
| PpsI | GAGTC | 2 cut(s) | 448, 536 |
| PpuMI | RGGWCCY | 1 cut(s) | 248 |
| PsiI | TTATAA | 1 cut(s) | 942 |
| Psp5II | RGGWCCY | 1 cut(s) | 248 |
| Psp6I | CCWGG | 1 cut(s) | 420 |
| PspGI | CCWGG | 1 cut(s) | 420 |
| PspN4I | GGNNCC | 2 cut(s) | 426, 696 |
| PspPI | GGNCC | 3 cut(s) | 164, 248, 425 |
| PspPPI | RGGWCCY | 1 cut(s) | 248 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 678, 710 |
| PstI | CTGCAG | 2 cut(s) | 767, 1024 |
| PsuI | RGATCY | 4 cut(s) | 64, 343, 387, 1904 |
| RsaI | GTAC | 2 cut(s) | 1207, 1334 |
| RsaNI | GTAC | 2 cut(s) | 1206, 1333 |
| RseI | CAYNNNNRTG | 1 cut(s) | 137 |
| SaqAI | TTAA | 6 cut(s) | 381, 930, 1199, 1317, 1413, 1799 |
| SatI | GCNGC | 1 cut(s) | 1242 |
| Sau96I | GGNCC | 3 cut(s) | 164, 248, 425 |
| SchI | GAGTC | 2 cut(s) | 448, 536 |
| ScrFI | CCNGG | 2 cut(s) | 168, 422 |
| SduI | GDGCHC | 3 cut(s) | 144, 1111, 1141 |
| SfaNI | GCATC | 2 cut(s) | 1216, 1765 |
| SfcI | CTRYAG | 3 cut(s) | 763, 1020, 1230 |
| SfuI | TTCGAA | 1 cut(s) | 1121 |
| SinI | GGWCC | 1 cut(s) | 248 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 137 |
| SphI | GCATGC | 1 cut(s) | 1716 |
| Sse9I | AATT | 9 cut(s) | 20, 152, 323, 458, 784, 1200, 1401, 1636, 1747 |
| SsiI | CCGC | 1 cut(s) | 94 |
| StyD4I | CCNGG | 2 cut(s) | 166, 420 |
| StyI | CCWWGG | 2 cut(s) | 73, 359 |
| TaaI | ACNGT | 4 cut(s) | 1378, 1462, 1486, 1607 |
| TaqI | TCGA | 4 cut(s) | 234, 797, 862, 1121 |
| TasI | AATT | 9 cut(s) | 20, 152, 323, 458, 784, 1200, 1401, 1636, 1747 |
| TatI | WGTACW | 1 cut(s) | 1205 |
| TfiI | GAWTC | 4 cut(s) | 350, 612, 1435, 1864 |
| Tru1I | TTAA | 6 cut(s) | 381, 930, 1199, 1317, 1413, 1799 |
| Tru9I | TTAA | 6 cut(s) | 381, 930, 1199, 1317, 1413, 1799 |
| TscAI | CASTG | 2 cut(s) | 151, 1612 |
| TseFI | GTSAC | 5 cut(s) | 509, 539, 850, 1267, 1456 |
| TseI | GCWGC | 1 cut(s) | 1241 |
| Tsp45I | GTSAC | 5 cut(s) | 509, 539, 850, 1267, 1456 |
| TspGWI | ACGGA | 1 cut(s) | 557 |
| TspRI | CASTG | 2 cut(s) | 151, 1612 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1556 |
| VpaK11BI | GGWCC | 1 cut(s) | 248 |
| XapI | RAATTY | 2 cut(s) | 784, 1401 |
| XbaI | TCTAGA | 1 cut(s) | 346 |
| XceI | RCATGY | 4 cut(s) | 175, 1015, 1700, 1716 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1182 |
| XmaJI | CCTAGG | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 12 |
| Zsp2I | ATGCAT | 1 cut(s) | 1896 |