Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC2_membrane_3 | PF12698 | 262 - 518 | 1.9e-09 | ABC-2 family transporter protein |
| ABC_tran | PF00005 | 652 - 796 | 5.3e-23 | ABC transporter |
| AAA_21 | PF13304 | 765 - 828 | 1e-07 | AAA domain, putative AbiEii toxin, Type IV TA system |
| ABCA12_C | PF24526 | 862 - 912 | 2.4e-27 | ABCA12-like, C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2066, 2743 |
| AccBSI | CCGCTC | 2 cut(s) | 90, 873 |
| AccI | GTMKAC | 1 cut(s) | 2670 |
| AccII | CGCG | 1 cut(s) | 1886 |
| AclI | AACGTT | 1 cut(s) | 1359 |
| AcsI | RAATTY | 8 cut(s) | 445, 601, 739, 1257, 1312, 1529, 1579, 2514 |
| AcuI | CTGAAG | 3 cut(s) | 186, 1560, 2582 |
| AcvI | CACGTG | 1 cut(s) | 911 |
| AcyI | GRCGYC | 2 cut(s) | 5, 1769 |
| AfaI | GTAC | 7 cut(s) | 765, 824, 1109, 1214, 1549, 1876, 2389 |
| AfeI | AGCGCT | 1 cut(s) | 2559 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 136, 194, 1909, 2066, 2390, 2607, 2743 |
| AflII | CTTAAG | 1 cut(s) | 2204 |
| AflIII | ACRYGT | 1 cut(s) | 531 |
| AjnI | CCWGG | 2 cut(s) | 1489, 1918 |
| Alw21I | GWGCWC | 1 cut(s) | 1780 |
| Alw26I | GTCTC | 3 cut(s) | 1503, 1579, 2789 |
| Alw44I | GTGCAC | 1 cut(s) | 1776 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1205 |
| Ama87I | CYCGRG | 1 cut(s) | 279 |
| Aor51HI | AGCGCT | 1 cut(s) | 2559 |
| AoxI | GGCC | 1 cut(s) | 924 |
| ApaLI | GTGCAC | 1 cut(s) | 1776 |
| ApeKI | GCWGC | 9 cut(s) | 20, 140, 583, 973, 1340, 1343, 1722, 2701, 2750 |
| ApoI | RAATTY | 8 cut(s) | 445, 601, 739, 1257, 1312, 1529, 1579, 2514 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2700, 2732 |
| AseI | ATTAAT | 1 cut(s) | 756 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 803, 886, 1425, 2267 |
| AspLEI | GCGC | 5 cut(s) | 7, 493, 588, 687, 2560 |
| AspS9I | GGNCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| AsuC2I | CCSGG | 2 cut(s) | 377, 1405 |
| AsuHPI | GGTGA | 6 cut(s) | 482, 510, 588, 1169, 1525, 2643 |
| AvaI | CYCGRG | 1 cut(s) | 279 |
| AvaII | GGWCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| BaeGI | GKGCMC | 1 cut(s) | 1780 |
| BamHI | GGATCC | 1 cut(s) | 2356 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 259 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 372, 404, 2354, 2386 |
| BauI | CACGAG | 1 cut(s) | 1977 |
| BbrPI | CACGTG | 1 cut(s) | 911 |
| BbsI | GAAGAC | 3 cut(s) | 2027, 2725, 2803 |
| Bbv12I | GWGCWC | 1 cut(s) | 1780 |
| BbvCI | CCTCAGC | 1 cut(s) | 240 |
| BbvI | GCAGC | 9 cut(s) | 7, 127, 595, 960, 1330, 1352, 1709, 2688, 2737 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1968, 2002 |
| BciT130I | CCWGG | 2 cut(s) | 1491, 1920 |
| BciVI | GTATCC | 2 cut(s) | 1497, 1926 |
| BcnI | CCSGG | 2 cut(s) | 377, 1405 |
| BcoDI | GTCTC | 3 cut(s) | 1503, 1579, 2789 |
| BfaI | CTAG | 7 cut(s) | 1337, 1458, 1773, 2385, 2396, 2510, 2568 |
| BfmI | CTRYAG | 5 cut(s) | 155, 941, 1001, 1206, 1794 |
| BfoI | RGCGCY | 3 cut(s) | 8, 589, 2561 |
| BfrI | CTTAAG | 1 cut(s) | 2204 |
| BfuI | GTATCC | 2 cut(s) | 1497, 1926 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 682 |
| BlpI | GCTNAGC | 2 cut(s) | 869, 2330 |
| BmcAI | AGTACT | 3 cut(s) | 765, 1549, 2389 |
| Bme1390I | CCNGG | 4 cut(s) | 377, 1405, 1491, 1920 |
| Bme18I | GGWCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| BmeT110I | CYCGRG | 1 cut(s) | 279 |
| BmgT120I | GGNCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| BmiI | GGNNCC | 6 cut(s) | 6, 258, 772, 1165, 2005, 2358 |
| BmrFI | CCNGG | 4 cut(s) | 377, 1405, 1491, 1920 |
| BmrI | ACTGGG | 1 cut(s) | 405 |
| BmsI | GCATC | 2 cut(s) | 1011, 1557 |
| BmuI | ACTGGG | 1 cut(s) | 405 |
| BpiI | GAAGAC | 3 cut(s) | 2027, 2725, 2803 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2445, 2477 |
| BpmI | CTGGAG | 2 cut(s) | 864, 913 |
| Bpu10I | CCTNAGC | 1 cut(s) | 240 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 869, 2330 |
| BpuEI | CTTGAG | 4 cut(s) | 231, 507, 1499, 1815 |
| BpuMI | CCSGG | 2 cut(s) | 377, 1405 |
| BsaAI | YACGTR | 1 cut(s) | 911 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 1769 |
| BsaI | GGTCTC | 1 cut(s) | 2789 |
| BsaJI | CCNNGG | 1 cut(s) | 2478 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 74, 104 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 136, 194, 1909, 2066, 2390, 2607, 2743 |
| Bse1I | ACTGG | 8 cut(s) | 400, 554, 620, 930, 1285, 1469, 2176, 2395 |
| BseBI | CCWGG | 2 cut(s) | 1491, 1920 |
| BseDI | CCNNGG | 1 cut(s) | 2478 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 136, 194, 1909, 2066, 2390, 2607, 2743 |
| BseMII | CTCAG | 9 cut(s) | 50, 67, 254, 804, 860, 1141, 1929, 2117, 2694 |
| BseNI | ACTGG | 8 cut(s) | 400, 554, 620, 930, 1285, 1469, 2176, 2395 |
| BseRI | GAGGAG | 1 cut(s) | 358 |
| BseSI | GKGCMC | 1 cut(s) | 1780 |
| BseXI | GCAGC | 9 cut(s) | 7, 127, 595, 960, 1330, 1352, 1709, 2688, 2737 |
| BseYI | CCCAGC | 1 cut(s) | 2297 |
| BsgI | GTGCAG | 4 cut(s) | 312, 602, 933, 2034 |
| Bsh1236I | CGCG | 1 cut(s) | 1886 |
| BshFI | GGCC | 1 cut(s) | 926 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1780 |
| BsiHKCI | CYCGRG | 1 cut(s) | 279 |
| BsiSI | CCGG | 4 cut(s) | 8, 340, 377, 1404 |
| BslFI | GGGAC | 5 cut(s) | 216, 1570, 1780, 1989, 2698 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 136, 194, 1909, 2066, 2390, 2607, 2743 |
| BsmAI | GTCTC | 3 cut(s) | 1503, 1579, 2789 |
| BsmFI | GGGAC | 5 cut(s) | 216, 1570, 1780, 1989, 2698 |
| BsmI | GAATGC | 2 cut(s) | 665, 1991 |
| BsnI | GGCC | 1 cut(s) | 926 |
| Bso31I | GGTCTC | 1 cut(s) | 2789 |
| BsoBI | CYCGRG | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 2 cut(s) | 259, 1780 |
| Bsp1407I | TGTACA | 1 cut(s) | 1212 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 869, 2330 |
| Bsp19I | CCATGG | 1 cut(s) | 2478 |
| BspANI | GGCC | 1 cut(s) | 926 |
| BspCNI | CTCAG | 9 cut(s) | 49, 66, 253, 803, 861, 1140, 1930, 2116, 2693 |
| BspFNI | CGCG | 1 cut(s) | 1886 |
| BspHI | TCATGA | 3 cut(s) | 538, 1134, 2614 |
| BspLI | GGNNCC | 6 cut(s) | 6, 258, 772, 1165, 2005, 2358 |
| BspMAI | CTGCAG | 2 cut(s) | 159, 1005 |
| BspQI | GCTCTTC | 1 cut(s) | 1085 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTI | CTTAAG | 1 cut(s) | 2204 |
| BspTNI | GGTCTC | 1 cut(s) | 2789 |
| BsrBI | CCGCTC | 2 cut(s) | 90, 873 |
| BsrGI | TGTACA | 1 cut(s) | 1212 |
| BsrI | ACTGG | 8 cut(s) | 400, 554, 620, 930, 1285, 1469, 2176, 2395 |
| BssECI | CCNNGG | 1 cut(s) | 2478 |
| BssNAI | GTATAC | 1 cut(s) | 2671 |
| BssNI | GRCGYC | 2 cut(s) | 5, 1769 |
| BssSI | CACGAG | 1 cut(s) | 1977 |
| BssT1I | CCWWGG | 1 cut(s) | 2478 |
| Bst1107I | GTATAC | 1 cut(s) | 2671 |
| Bst2BI | CACGAG | 1 cut(s) | 1977 |
| Bst2UI | CCWGG | 2 cut(s) | 1491, 1920 |
| Bst4CI | ACNGT | 9 cut(s) | 177, 290, 945, 1201, 1552, 1561, 1798, 2770, 2841 |
| Bst6I | CTCTTC | 7 cut(s) | 1058, 1085, 1918, 2238, 2249, 2315, 2478 |
| BstACI | GRCGYC | 2 cut(s) | 5, 1769 |
| BstAFI | CTTAAG | 1 cut(s) | 2204 |
| BstAUI | TGTACA | 1 cut(s) | 1212 |
| BstBAI | YACGTR | 1 cut(s) | 911 |
| BstC8I | GCNNGC | 2 cut(s) | 25, 1997 |
| BstDSI | CCRYGG | 1 cut(s) | 2478 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1907 |
| BstFNI | CGCG | 1 cut(s) | 1886 |
| BstH2I | RGCGCY | 3 cut(s) | 8, 589, 2561 |
| BstHHI | GCGC | 5 cut(s) | 7, 493, 588, 687, 2560 |
| BstMAI | GTCTC | 3 cut(s) | 1503, 1579, 2789 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 682, 932, 1337, 2564, 2747, 2831 |
| BstNI | CCWGG | 2 cut(s) | 1491, 1920 |
| BstNSI | RCATGY | 3 cut(s) | 535, 1219, 1999 |
| BstSCI | CCNGG | 4 cut(s) | 375, 1403, 1489, 1918 |
| BstSFI | CTRYAG | 5 cut(s) | 155, 941, 1001, 1206, 1794 |
| BstSLI | GKGCMC | 1 cut(s) | 1780 |
| BstUI | CGCG | 1 cut(s) | 1886 |
| BstV1I | GCAGC | 9 cut(s) | 7, 127, 595, 960, 1330, 1352, 1709, 2688, 2737 |
| BstV2I | GAAGAC | 3 cut(s) | 2027, 2725, 2803 |
| BstX2I | RGATCY | 5 cut(s) | 197, 1444, 1790, 2356, 2398 |
| BstYI | RGATCY | 5 cut(s) | 197, 1444, 1790, 2356, 2398 |
| BstZ17I | GTATAC | 1 cut(s) | 2671 |
| BsuI | GTATCC | 2 cut(s) | 1497, 1926 |
| BsuRI | GGCC | 1 cut(s) | 926 |
| BtgI | CCRYGG | 1 cut(s) | 2478 |
| BtgZI | GCGATG | 2 cut(s) | 1340, 1585 |
| BtsI | GCAGTG | 4 cut(s) | 589, 921, 1956, 2543 |
| BtsIMutI | CAGTG | 7 cut(s) | 589, 921, 937, 1956, 2543, 2775, 2787 |
| Cac8I | GCNNGC | 2 cut(s) | 25, 1997 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1205 |
| CciI | TCATGA | 3 cut(s) | 538, 1134, 2614 |
| CfoI | GCGC | 5 cut(s) | 7, 493, 588, 687, 2560 |
| Cfr13I | GGNCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| CseI | GACGC | 1 cut(s) | 1777 |
| Csp6I | GTAC | 7 cut(s) | 764, 823, 1108, 1213, 1548, 1875, 2388 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1533, 1568 |
| CviQI | GTAC | 7 cut(s) | 764, 823, 1108, 1213, 1548, 1875, 2388 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 7 cut(s) | 1058, 1085, 1918, 2238, 2249, 2315, 2478 |
| EarI | CTCTTC | 7 cut(s) | 1058, 1085, 1918, 2238, 2249, 2315, 2478 |
| Eco130I | CCWWGG | 1 cut(s) | 2478 |
| Eco24I | GRGCYC | 1 cut(s) | 259 |
| Eco31I | GGTCTC | 1 cut(s) | 2789 |
| Eco47I | GGWCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| Eco47III | AGCGCT | 1 cut(s) | 2559 |
| Eco57I | CTGAAG | 3 cut(s) | 186, 1560, 2582 |
| Eco72I | CACGTG | 1 cut(s) | 911 |
| Eco88I | CYCGRG | 1 cut(s) | 279 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1907 |
| EcoRI | GAATTC | 3 cut(s) | 445, 739, 1529 |
| EcoRII | CCWGG | 2 cut(s) | 1489, 1918 |
| EcoT14I | CCWWGG | 1 cut(s) | 2478 |
| EcoT22I | ATGCAT | 1 cut(s) | 1149 |
| EcoT38I | GRGCYC | 1 cut(s) | 259 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 2478 |
| FaqI | GGGAC | 5 cut(s) | 216, 1570, 1780, 1989, 2698 |
| FauI | CCCGC | 2 cut(s) | 462, 866 |
| FauNDI | CATATG | 1 cut(s) | 2077 |
| FblI | GTMKAC | 1 cut(s) | 2670 |
| FriOI | GRGCYC | 1 cut(s) | 259 |
| FspBI | CTAG | 7 cut(s) | 1337, 1458, 1773, 2385, 2396, 2510, 2568 |
| GlaI | GCGC | 5 cut(s) | 6, 492, 587, 686, 2559 |
| GsaI | CCCAGC | 1 cut(s) | 2301 |
| GsuI | CTGGAG | 2 cut(s) | 864, 913 |
| HaeII | RGCGCY | 3 cut(s) | 8, 589, 2561 |
| HaeIII | GGCC | 1 cut(s) | 926 |
| HapII | CCGG | 4 cut(s) | 8, 340, 377, 1404 |
| HgaI | GACGC | 1 cut(s) | 1777 |
| HhaI | GCGC | 5 cut(s) | 7, 493, 588, 687, 2560 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 1769 |
| Hin6I | GCGC | 5 cut(s) | 5, 491, 586, 685, 2558 |
| HinP1I | GCGC | 5 cut(s) | 5, 491, 586, 685, 2558 |
| HindIII | AAGCTT | 1 cut(s) | 832 |
| HpaII | CCGG | 4 cut(s) | 8, 340, 377, 1404 |
| HphI | GGTGA | 6 cut(s) | 482, 510, 588, 1169, 1525, 2643 |
| Hpy166II | GTNNAC | 9 cut(s) | 169, 706, 1049, 1108, 1213, 1778, 2141, 2371, 2671 |
| Hpy8I | GTNNAC | 9 cut(s) | 169, 706, 1049, 1108, 1213, 1778, 2141, 2371, 2671 |
| HpyAV | CCTTC | 6 cut(s) | 662, 1837, 2169, 2319, 2356, 2557 |
| HpyCH4III | ACNGT | 9 cut(s) | 177, 290, 945, 1201, 1552, 1561, 1798, 2770, 2841 |
| HpyCH4IV | ACGT | 2 cut(s) | 910, 1359 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 682, 932, 1337, 2564, 2747, 2831 |
| HpySE526I | ACGT | 2 cut(s) | 910, 1359 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 1769 |
| HspAI | GCGC | 5 cut(s) | 5, 491, 586, 685, 2558 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| LguI | GCTCTTC | 1 cut(s) | 1085 |
| LmnI | GCTCC | 5 cut(s) | 10, 95, 262, 770, 2179 |
| Lsp1109I | GCAGC | 9 cut(s) | 7, 127, 595, 960, 1330, 1352, 1709, 2688, 2737 |
| LweI | GCATC | 2 cut(s) | 1011, 1557 |
| MaeI | CTAG | 7 cut(s) | 1337, 1458, 1773, 2385, 2396, 2510, 2568 |
| MaeII | ACGT | 2 cut(s) | 910, 1359 |
| MaeIII | GTNAC | 9 cut(s) | 270, 302, 379, 565, 725, 1382, 1825, 1880, 2716 |
| MbiI | CCGCTC | 2 cut(s) | 90, 873 |
| MflI | RGATCY | 5 cut(s) | 197, 1444, 1790, 2356, 2398 |
| MhlI | GDGCHC | 2 cut(s) | 259, 1780 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MlyI | GAGTC | 5 cut(s) | 28, 341, 2095, 2255, 2670 |
| MmeI | TCCRAC | 2 cut(s) | 810, 1380 |
| Mph1103I | ATGCAT | 1 cut(s) | 1149 |
| MroXI | GAANNNNTTC | 4 cut(s) | 803, 886, 1425, 2267 |
| MseI | TTAA | 8 cut(s) | 65, 110, 756, 1253, 1362, 2205, 2228, 2465 |
| MslI | CAYNNNNRTG | 2 cut(s) | 543, 1628 |
| MspA1I | CMGCKG | 3 cut(s) | 20, 467, 1343 |
| MspCI | CTTAAG | 1 cut(s) | 2204 |
| MspI | CCGG | 4 cut(s) | 8, 340, 377, 1404 |
| MspR9I | CCNGG | 4 cut(s) | 377, 1405, 1491, 1920 |
| Mva1269I | GAATGC | 2 cut(s) | 665, 1991 |
| MvaI | CCWGG | 2 cut(s) | 1491, 1920 |
| MvnI | CGCG | 1 cut(s) | 1886 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 682, 932, 1337, 2564, 2747, 2831 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NciI | CCSGG | 2 cut(s) | 377, 1405 |
| NcoI | CCATGG | 1 cut(s) | 2478 |
| NdeI | CATATG | 1 cut(s) | 2077 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 258, 772, 1165, 2005, 2358 |
| NmuCI | GTSAC | 3 cut(s) | 565, 1880, 2716 |
| NsiI | ATGCAT | 1 cut(s) | 1149 |
| NspI | RCATGY | 3 cut(s) | 535, 1219, 1999 |
| PaeI | GCATGC | 1 cut(s) | 1999 |
| PaeR7I | CTCGAG | 1 cut(s) | 279 |
| PagI | TCATGA | 3 cut(s) | 538, 1134, 2614 |
| PciI | ACATGT | 1 cut(s) | 531 |
| PciSI | GCTCTTC | 1 cut(s) | 1085 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 286 |
| PctI | GAATGC | 2 cut(s) | 665, 1991 |
| PdmI | GAANNNNTTC | 4 cut(s) | 803, 886, 1425, 2267 |
| PfeI | GAWTC | 6 cut(s) | 512, 887, 919, 1131, 2209, 2263 |
| PflFI | GACNNNGTC | 1 cut(s) | 37 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2066, 2743 |
| PfoI | TCCNGGA | 1 cut(s) | 1918 |
| PleI | GAGTC | 5 cut(s) | 28, 340, 2095, 2254, 2670 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| PmaCI | CACGTG | 1 cut(s) | 911 |
| PmlI | CACGTG | 1 cut(s) | 911 |
| PpsI | GAGTC | 5 cut(s) | 28, 340, 2095, 2254, 2670 |
| Ppu21I | YACGTR | 1 cut(s) | 911 |
| PscI | ACATGT | 1 cut(s) | 531 |
| PshBI | ATTAAT | 1 cut(s) | 756 |
| Psp1406I | AACGTT | 1 cut(s) | 1359 |
| Psp6I | CCWGG | 2 cut(s) | 1489, 1918 |
| PspCI | CACGTG | 1 cut(s) | 911 |
| PspFI | CCCAGC | 1 cut(s) | 2297 |
| PspGI | CCWGG | 2 cut(s) | 1489, 1918 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 258, 772, 1165, 2005, 2358 |
| PspPI | GGNCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| PstI | CTGCAG | 2 cut(s) | 159, 1005 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1205 |
| PsuI | RGATCY | 5 cut(s) | 197, 1444, 1790, 2356, 2398 |
| PsyI | GACNNNGTC | 1 cut(s) | 37 |
| PvuII | CAGCTG | 1 cut(s) | 1343 |
| RsaI | GTAC | 7 cut(s) | 765, 824, 1109, 1214, 1549, 1876, 2389 |
| RsaNI | GTAC | 7 cut(s) | 764, 823, 1108, 1213, 1548, 1875, 2388 |
| RseI | CAYNNNNRTG | 2 cut(s) | 543, 1628 |
| SapI | GCTCTTC | 1 cut(s) | 1085 |
| SaqAI | TTAA | 8 cut(s) | 65, 110, 756, 1253, 1362, 2205, 2228, 2465 |
| Sau96I | GGNCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| SbfI | CCTGCAGG | 1 cut(s) | 1005 |
| ScaI | AGTACT | 3 cut(s) | 765, 1549, 2389 |
| SchI | GAGTC | 5 cut(s) | 28, 341, 2095, 2255, 2670 |
| ScrFI | CCNGG | 4 cut(s) | 377, 1405, 1491, 1920 |
| SdaI | CCTGCAGG | 1 cut(s) | 1005 |
| SduI | GDGCHC | 2 cut(s) | 259, 1780 |
| SfaNI | GCATC | 2 cut(s) | 1011, 1557 |
| SfcI | CTRYAG | 5 cut(s) | 155, 941, 1001, 1206, 1794 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| Sfr274I | CTCGAG | 1 cut(s) | 279 |
| SinI | GGWCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| SlaI | CTCGAG | 1 cut(s) | 279 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 543, 1628 |
| SmlI | CTYRAG | 6 cut(s) | 246, 279, 522, 1478, 1830, 2204 |
| SmoI | CTYRAG | 6 cut(s) | 246, 279, 522, 1478, 1830, 2204 |
| SphI | GCATGC | 1 cut(s) | 1999 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1005 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspI | AATATT | 1 cut(s) | 651 |
| SspMI | CTAG | 7 cut(s) | 1337, 1458, 1773, 2385, 2396, 2510, 2568 |
| StyD4I | CCNGG | 4 cut(s) | 375, 1403, 1489, 1918 |
| StyI | CCWWGG | 1 cut(s) | 2478 |
| TaaI | ACNGT | 9 cut(s) | 177, 290, 945, 1201, 1552, 1561, 1798, 2770, 2841 |
| TaiI | ACGT | 2 cut(s) | 913, 1362 |
| TaqI | TCGA | 3 cut(s) | 280, 625, 2506 |
| TaqII | GACCGA | 1 cut(s) | 2466 |
| TatI | WGTACW | 5 cut(s) | 763, 1212, 1547, 1874, 2387 |
| TauI | GCSGC | 4 cut(s) | 904, 2075, 2441, 2761 |
| TfiI | GAWTC | 6 cut(s) | 512, 887, 919, 1131, 2209, 2263 |
| Tru1I | TTAA | 8 cut(s) | 65, 110, 756, 1253, 1362, 2205, 2228, 2465 |
| Tru9I | TTAA | 8 cut(s) | 65, 110, 756, 1253, 1362, 2205, 2228, 2465 |
| TscAI | CASTG | 7 cut(s) | 596, 921, 937, 1956, 2543, 2775, 2794 |
| TseFI | GTSAC | 3 cut(s) | 565, 1880, 2716 |
| TseI | GCWGC | 9 cut(s) | 20, 140, 583, 973, 1340, 1343, 1722, 2701, 2750 |
| Tsp45I | GTSAC | 3 cut(s) | 565, 1880, 2716 |
| TspRI | CASTG | 7 cut(s) | 596, 921, 937, 1956, 2543, 2775, 2794 |
| Tth111I | GACNNNGTC | 1 cut(s) | 37 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2066, 2743 |
| Vha464I | CTTAAG | 1 cut(s) | 2204 |
| VneI | GTGCAC | 1 cut(s) | 1776 |
| VpaK11BI | GGWCC | 4 cut(s) | 1046, 1163, 2003, 2449 |
| VspI | ATTAAT | 1 cut(s) | 756 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1907 |
| XapI | RAATTY | 8 cut(s) | 445, 601, 739, 1257, 1312, 1529, 1579, 2514 |
| XceI | RCATGY | 3 cut(s) | 535, 1219, 1999 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 100, 2476 |
| XhoI | CTCGAG | 1 cut(s) | 279 |
| XmiI | GTMKAC | 1 cut(s) | 2670 |
| XmnI | GAANNNNTTC | 4 cut(s) | 803, 886, 1425, 2267 |
| XspI | CTAG | 7 cut(s) | 1337, 1458, 1773, 2385, 2396, 2510, 2568 |
| ZrmI | AGTACT | 3 cut(s) | 765, 1549, 2389 |
| Zsp2I | ATGCAT | 1 cut(s) | 1149 |