Rmu_ssc0000064.1_g000029

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000064.1
Physical Location & Seq
Forward (+)
184038 .. 185741
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000064.1_g000029.1.cds

Sequence Viewer

Length: 1254 bp
atggaggttatctcgtggaattgccgtggcatcaacaacgatgcagcggtgcaagcgttgcgccggttggtgcagcagaaaaagccggatttcgttttcctgtgtgagacgaagatccgagattggaactatatgaataatctccgtctggaggtggggatgatgaactgtgaggcggtattctcagtcgggcagagtggtggtttggctctgttttggagggacgggctggatgttcggtttcgttcgaaatcttcacatcatatcgacgtggaggttcatgaaactgacgggtctggtatacggtggaggctaactagtttttatggccatcccaccaccgttgagcgccaccgtacttggtcaccattgcgagaattgagcgaggaagtgcagttaccgtgggtggtcatcggtgatttcaatgagctgttgaatgcccaagagaaggaaggaggtgaaatacggcgtgaaggccaaatgctgcttttcagggatgccttttcctactcagaactgttcgacttgggtttcttcgggtcgtctttcacttggaaggggccggggatgcggagcaggttggacagaggagtggcttccgcttcatggcttgatgtgtttccagcggctagggttcaacacctactgccgatccatggagatcatattcccatttttctaggggtgtaccgaaggcctgtgcgttccaattctaggcacagtcggcggttcaggtttgagagtcattggacacacacagatagcagttttgaggttgtacgtgagggttgggagcgtagttctgatgggtttcctatgttcaaaacagtgcagcaacttcgtaacactaagtttgctttagcagattggcagcgtatcacctatggcaacagaggcgacaaacctgccggcgttggacttggtgggctactgctcgatgagaacatcgccggcgactctgaaggagtttcagacgaaggaatgctcgaggaagatgctttgggcacccaatcatctttcttctctgccacaacctgcgtcgagcactggaggataatcgacgttgatgatgtcaatcgattcgaggcggcgccgttttcgatctttggttgtcgaaggcgaaaccatctaaaaccggaatcggaatcttccggtgagagatgttgtgcttctgcccgtgtttcgacgacaaccactagtccaccatcggacttccgacgacgtggaccggtcttgctcatctcctcgacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

47.52

Weight (kDa)

6.52

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 567, 913, 1043
AccB1I GGYRCC 2 cut(s) 1004, 1090
AccI GTMKAC 1 cut(s) 301
AciI CCGC 7 cut(s) 47, 176, 571, 600, 626, 727, 1088
AclWI GGATC 2 cut(s) 109, 646
AcoI YGGCCR 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 981
AcyI GRCGYC 1 cut(s) 1091
AfaI GTAC 3 cut(s) 358, 689, 780
AfiI CCNNNNNNNGG 5 cut(s) 151, 448, 606, 656, 714
AgeI ACCGGT 1 cut(s) 1228
AgsI TTSAA 4 cut(s) 424, 436, 638, 823
AhlI ACTAGT 2 cut(s) 317, 1196
AjiI CACGTC 2 cut(s) 271, 1223
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 2 cut(s) 109, 646
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 4 cut(s) 328, 475, 560, 695
ApeKI GCWGC 5 cut(s) 44, 73, 484, 832, 871
AsiGI ACCGGT 1 cut(s) 1228
AspLEI GCGC 3 cut(s) 63, 351, 1093
AspS9I GGNCC 2 cut(s) 560, 1226
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 5 cut(s) 357, 428, 470, 871, 1166
AsuII TTCGAA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 1 cut(s) 1226
BaeGI GKGCMC 1 cut(s) 1007
BalI TGGCCA 1 cut(s) 330
BanI GGYRCC 2 cut(s) 1004, 1090
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BauI CACGAG 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 5 cut(s) 56, 85, 471, 844, 883
BccI CCATC 4 cut(s) 339, 800, 1134, 1213
BceAI ACGGC 3 cut(s) 9, 482, 1078
BcgI CGANNNNNNTGC 6 cut(s) 821, 855, 887, 921, 977, 1011
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 101
BcuI ACTAGT 2 cut(s) 317, 1196
BfaI CTAG 5 cut(s) 318, 630, 680, 714, 1197
BfoI RGCGCY 2 cut(s) 352, 1094
BfuAI ACCTGC 3 cut(s) 567, 913, 1043
BisI GCNGC 7 cut(s) 45, 74, 485, 627, 833, 872, 1089
BlsI GCNGC 7 cut(s) 46, 75, 486, 628, 834, 873, 1090
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 1226
BmeT110I CYCGRG 1 cut(s) 986
BmgBI CACGTC 2 cut(s) 271, 1223
BmgT120I GGNCC 2 cut(s) 560, 1226
BmiI GGNNCC 3 cut(s) 561, 1006, 1092
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 5 cut(s) 31, 39, 487, 558, 985
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 170, 1069
Bpu14I TTCGAA 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 564
Bsa29I ATCGAT 1 cut(s) 1078
BsaAI YACGTR 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 1074
BsaHI GRCGYC 1 cut(s) 1091
BsaJI CCNNGG 4 cut(s) 25, 401, 563, 655
BsaWI WCCGGW 3 cut(s) 1135, 1151, 1228
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 448, 606, 656, 714
Bse118I RCCGGY 4 cut(s) 63, 908, 950, 1228
Bse1I ACTGG 1 cut(s) 1052
Bse3DI GCAATG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 1074
BseCI ATCGAT 1 cut(s) 1078
BseDI CCNNGG 4 cut(s) 25, 401, 563, 655
BseGI GGATG 5 cut(s) 165, 238, 331, 502, 573
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 5 cut(s) 151, 448, 606, 656, 714
BseMI GCAATG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 198, 525
BseNI ACTGG 1 cut(s) 1052
BseRI GAGGAG 2 cut(s) 603, 1234
BseSI GKGCMC 1 cut(s) 1007
BseXI GCAGC 5 cut(s) 56, 85, 471, 844, 883
BsgI GTGCAG 3 cut(s) 92, 413, 851
BshFI GGCC 4 cut(s) 330, 477, 562, 697
BshNI GGYRCC 2 cut(s) 1004, 1090
BshTI ACCGGT 1 cut(s) 1228
BshVI ATCGAT 1 cut(s) 1078
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 986
BsiSI CCGG 8 cut(s) 64, 86, 563, 909, 951, 1136, 1152, 1229
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 5 cut(s) 151, 448, 606, 656, 714
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 2 cut(s) 442, 987
BsnI GGCC 4 cut(s) 330, 477, 562, 697
BsoBI CYCGRG 1 cut(s) 986
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 1007, 1047
Bsp143I GATC 4 cut(s) 114, 651, 661, 1101
Bsp19I CCATGG 1 cut(s) 655
BspACI CCGC 7 cut(s) 47, 176, 571, 600, 626, 727, 1088
BspANI GGCC 4 cut(s) 330, 477, 562, 697
BspCNI CTCAG 2 cut(s) 197, 524
BspDI ATCGAT 1 cut(s) 1078
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 3 cut(s) 561, 1006, 1092
BspMI ACCTGC 3 cut(s) 567, 913, 1043
BspPI GGATC 2 cut(s) 109, 646
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 2 cut(s) 1004, 1090
BsrDI GCAATG 1 cut(s) 368
BsrFI RCCGGY 4 cut(s) 63, 908, 950, 1228
BsrI ACTGG 1 cut(s) 1052
BssAI RCCGGY 4 cut(s) 63, 908, 950, 1228
BssECI CCNNGG 4 cut(s) 25, 401, 563, 655
BssMI GATC 4 cut(s) 114, 651, 661, 1101
BssNAI GTATAC 1 cut(s) 302
BssNI GRCGYC 1 cut(s) 1091
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 655
Bst1107I GTATAC 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 8 cut(s) 170, 306, 343, 356, 402, 519, 722, 829
BstACI GRCGYC 1 cut(s) 1091
BstAPI GCANNNNNTGC 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 54, 910, 952
BstDEI CTNAG 3 cut(s) 184, 511, 849
BstDSI CCRYGG 3 cut(s) 25, 401, 655
BstEII GGTNACC 1 cut(s) 363
BstF5I GGATG 5 cut(s) 165, 238, 331, 502, 573
BstH2I RGCGCY 2 cut(s) 352, 1094
BstHHI GCGC 3 cut(s) 63, 351, 1093
BstKTI GATC 4 cut(s) 117, 654, 664, 1104
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 4 cut(s) 114, 651, 661, 1101
BstMWI GCNNNNNNNGC 6 cut(s) 53, 58, 82, 568, 724, 894
BstPI GGTNACC 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 562
BstSLI GKGCMC 1 cut(s) 1007
BstV1I GCAGC 5 cut(s) 56, 85, 471, 844, 883
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BstZ17I GTATAC 1 cut(s) 302
Bsu15I ATCGAT 1 cut(s) 1078
BsuRI GGCC 4 cut(s) 330, 477, 562, 697
BsuTUI ATCGAT 1 cut(s) 1078
BtgI CCRYGG 3 cut(s) 25, 401, 655
BtgZI GCGATG 1 cut(s) 931
BtrI CACGTC 2 cut(s) 271, 1223
BtsCI GGATG 5 cut(s) 165, 238, 331, 502, 573
BtsIMutI CAGTG 2 cut(s) 834, 1045
BveI ACCTGC 3 cut(s) 567, 913, 1043
Cac8I GCNNGC 3 cut(s) 54, 910, 952
CciI TCATGA 1 cut(s) 280
CfoI GCGC 3 cut(s) 63, 351, 1093
Cfr10I RCCGGY 4 cut(s) 63, 908, 950, 1228
Cfr13I GGNCC 2 cut(s) 560, 1226
ClaI ATCGAT 1 cut(s) 1078
CseI GACGC 1 cut(s) 1027
Csp6I GTAC 3 cut(s) 357, 688, 779
CspAI ACCGGT 1 cut(s) 1228
CspCI CAANNNNNGTGG 4 cut(s) 325, 341, 360, 376
CviAII CATG 3 cut(s) 281, 606, 656
CviQI GTAC 3 cut(s) 357, 688, 779
DdeI CTNAG 3 cut(s) 184, 511, 849
DinI GGCGCC 1 cut(s) 1092
DpnI GATC 4 cut(s) 116, 653, 663, 1103
DpnII GATC 4 cut(s) 114, 651, 661, 1101
EaeI YGGCCR 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 655
Eco147I AGGCCT 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 1226
Eco57I CTGAAG 1 cut(s) 981
Eco88I CYCGRG 1 cut(s) 986
Eco91I GGTNACC 1 cut(s) 363
EcoO65I GGTNACC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 655
EgeI GGCGCC 1 cut(s) 1092
EheI GGCGCC 1 cut(s) 1092
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 3 cut(s) 284, 609, 659
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 280, 605, 655
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 7 cut(s) 45, 74, 485, 627, 833, 872, 1089
FokI GGATG 5 cut(s) 172, 245, 318, 509, 580
Fsp4HI GCNGC 7 cut(s) 45, 74, 485, 627, 833, 872, 1089
FspBI CTAG 5 cut(s) 318, 630, 680, 714, 1197
GlaI GCGC 3 cut(s) 62, 350, 1092
GluI GCNGC 7 cut(s) 45, 74, 485, 627, 833, 872, 1089
GsuI CTGGAG 2 cut(s) 170, 1069
HaeII RGCGCY 2 cut(s) 352, 1094
HaeIII GGCC 4 cut(s) 330, 477, 562, 697
HapII CCGG 8 cut(s) 64, 86, 563, 909, 951, 1136, 1152, 1229
HgaI GACGC 1 cut(s) 1027
HhaI GCGC 3 cut(s) 63, 351, 1093
Hin1I GRCGYC 1 cut(s) 1091
Hin1II CATG 3 cut(s) 284, 609, 659
Hin6I GCGC 3 cut(s) 61, 349, 1091
HinP1I GCGC 3 cut(s) 61, 349, 1091
HinfI GANTC 5 cut(s) 742, 956, 1080, 1139, 1145
HpaII CCGG 8 cut(s) 64, 86, 563, 909, 951, 1136, 1152, 1229
HphI GGTGA 5 cut(s) 357, 428, 470, 871, 1166
Hpy166II GTNNAC 4 cut(s) 302, 688, 1202, 1226
Hpy188I TCNGA 8 cut(s) 119, 514, 805, 961, 973, 1144, 1210, 1217
Hpy188III TCNNGA 2 cut(s) 149, 281
Hpy8I GTNNAC 4 cut(s) 302, 688, 1202, 1226
Hpy99I CGWCG 6 cut(s) 272, 1043, 1064, 1189, 1221, 1224
HpyAV CCTTC 8 cut(s) 442, 446, 467, 550, 687, 956, 971, 1110
HpyCH4III ACNGT 8 cut(s) 170, 306, 343, 356, 402, 519, 722, 829
HpyCH4IV ACGT 4 cut(s) 270, 781, 1062, 1222
HpyCH4V TGCA 5 cut(s) 44, 52, 73, 394, 832
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 58, 82, 568, 724, 894
HpyF3I CTNAG 3 cut(s) 184, 511, 849
HpySE526I ACGT 4 cut(s) 270, 781, 1062, 1222
Hsp92I GRCGYC 1 cut(s) 1091
Hsp92II CATG 3 cut(s) 284, 609, 659
HspAI GCGC 3 cut(s) 61, 349, 1091
KasI GGCGCC 1 cut(s) 1090
KroI GCCGGC 2 cut(s) 908, 950
KroNI GCCGGC 2 cut(s) 910, 952
Kzo9I GATC 4 cut(s) 114, 651, 661, 1101
LmnI GCTCC 2 cut(s) 573, 793
Lsp1109I GCAGC 5 cut(s) 56, 85, 471, 844, 883
LweI GCATC 5 cut(s) 31, 39, 487, 558, 985
MaeI CTAG 5 cut(s) 318, 630, 680, 714, 1197
MaeII ACGT 4 cut(s) 270, 781, 1062, 1222
MaeIII GTNAC 3 cut(s) 363, 396, 842
MalI GATC 4 cut(s) 116, 653, 663, 1103
MboI GATC 4 cut(s) 114, 651, 661, 1101
MboII GAAGA 6 cut(s) 124, 246, 526, 1004, 1012, 1140
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 1007, 1047
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 3 cut(s) 19, 377, 709
MluNI TGGCCA 1 cut(s) 330
Mly113I GGCGCC 1 cut(s) 1091
MlyI GAGTC 2 cut(s) 751, 950
MmeI TCCRAC 3 cut(s) 561, 895, 1240
Mox20I TGGCCA 1 cut(s) 330
MreI CGCCGGCG 1 cut(s) 950
MroNI GCCGGC 2 cut(s) 908, 950
MscI TGGCCA 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 47, 626
MspI CCGG 8 cut(s) 64, 86, 563, 909, 951, 1136, 1152, 1229
MspR9I CCNGG 1 cut(s) 564
Mva1269I GAATGC 2 cut(s) 442, 987
MwoI GCNNNNNNNGC 6 cut(s) 53, 58, 82, 568, 724, 894
NaeI GCCGGC 2 cut(s) 910, 952
NarI GGCGCC 1 cut(s) 1091
NciI CCSGG 1 cut(s) 564
NcoI CCATGG 1 cut(s) 655
NdeII GATC 4 cut(s) 114, 651, 661, 1101
NgoMIV GCCGGC 2 cut(s) 908, 950
NlaIII CATG 3 cut(s) 284, 609, 659
NlaIV GGNNCC 3 cut(s) 561, 1006, 1092
NmuCI GTSAC 1 cut(s) 363
NspV TTCGAA 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 986
PagI TCATGA 1 cut(s) 280
PceI AGGCCT 1 cut(s) 697
PctI GAATGC 2 cut(s) 442, 987
PdiI GCCGGC 2 cut(s) 910, 952
PfeI GAWTC 3 cut(s) 1080, 1139, 1145
PinAI ACCGGT 1 cut(s) 1228
PkrI GCNGC 7 cut(s) 46, 75, 486, 628, 834, 873, 1090
PleI GAGTC 2 cut(s) 750, 950
PluTI GGCGCC 1 cut(s) 1094
PpsI GAGTC 2 cut(s) 750, 950
Ppu21I YACGTR 1 cut(s) 782
PspEI GGTNACC 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 561, 1006, 1092
PspPI GGNCC 2 cut(s) 560, 1226
PspXI VCTCGAGB 1 cut(s) 986
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 3 cut(s) 358, 689, 780
RsaNI GTAC 3 cut(s) 357, 688, 779
SatI GCNGC 7 cut(s) 45, 74, 485, 627, 833, 872, 1089
Sau3AI GATC 4 cut(s) 114, 651, 661, 1101
Sau96I GGNCC 2 cut(s) 560, 1226
SchI GAGTC 2 cut(s) 751, 950
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 2 cut(s) 1007, 1047
SfaNI GCATC 5 cut(s) 31, 39, 487, 558, 985
SfoI GGCGCC 1 cut(s) 1092
Sfr274I CTCGAG 1 cut(s) 986
SfuI TTCGAA 1 cut(s) 248
SgrAI CRCCGGYG 1 cut(s) 950
SinI GGWCC 1 cut(s) 1226
SlaI CTCGAG 1 cut(s) 986
SmlI CTYRAG 1 cut(s) 986
SmoI CTYRAG 1 cut(s) 986
SpeI ACTAGT 2 cut(s) 317, 1196
Sse9I AATT 3 cut(s) 19, 377, 709
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 7 cut(s) 47, 176, 571, 600, 626, 727, 1088
SspDI GGCGCC 1 cut(s) 1090
SspMI CTAG 5 cut(s) 318, 630, 680, 714, 1197
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 8 cut(s) 170, 306, 343, 356, 402, 519, 722, 829
TaiI ACGT 4 cut(s) 273, 784, 1065, 1225
TasI AATT 3 cut(s) 19, 377, 709
TauI GCSGC 2 cut(s) 629, 1091
TfiI GAWTC 3 cut(s) 1080, 1139, 1145
TscAI CASTG 2 cut(s) 834, 1052
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 5 cut(s) 44, 73, 484, 832, 871
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 5 cut(s) 149, 179, 269, 297, 594
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 2 cut(s) 834, 1052
VpaK11BI GGWCC 1 cut(s) 1226
XhoI CTCGAG 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 5 cut(s) 318, 630, 680, 714, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.