ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 507 |
| AccI | GTMKAC | 2 cut(s) | 160, 248 |
| AciI | CCGC | 3 cut(s) | 4, 42, 164 |
| AcoI | YGGCCR | 1 cut(s) | 115 |
| AcsI | RAATTY | 1 cut(s) | 129 |
| AcuI | CTGAAG | 2 cut(s) | 638, 654 |
| AdeI | CACNNNGTG | 1 cut(s) | 21 |
| AfaI | GTAC | 1 cut(s) | 596 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| AgeI | ACCGGT | 1 cut(s) | 769 |
| AgsI | TTSAA | 4 cut(s) | 220, 479, 539, 743 |
| AjnI | CCWGG | 2 cut(s) | 34, 225 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 263, 295 |
| AluBI | AGCT | 1 cut(s) | 318 |
| AluI | AGCT | 1 cut(s) | 318 |
| Alw26I | GTCTC | 1 cut(s) | 260 |
| AoxI | GGCC | 3 cut(s) | 39, 115, 522 |
| ApeKI | GCWGC | 1 cut(s) | 780 |
| ApoI | RAATTY | 1 cut(s) | 129 |
| AsiGI | ACCGGT | 1 cut(s) | 769 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 651 |
| AspA2I | CCTAGG | 1 cut(s) | 185 |
| AspLEI | GCGC | 1 cut(s) | 12 |
| AspS9I | GGNCC | 4 cut(s) | 39, 223, 361, 767 |
| AsuHPI | GGTGA | 1 cut(s) | 736 |
| AvaII | GGWCC | 3 cut(s) | 223, 361, 767 |
| AvrII | CCTAGG | 1 cut(s) | 185 |
| BaeGI | GKGCMC | 2 cut(s) | 510, 752 |
| BalI | TGGCCA | 1 cut(s) | 117 |
| BanI | GGYRCC | 1 cut(s) | 507 |
| BbvI | GCAGC | 1 cut(s) | 767 |
| BccI | CCATC | 2 cut(s) | 149, 623 |
| BceAI | ACGGC | 1 cut(s) | 315 |
| BciT130I | CCWGG | 2 cut(s) | 36, 227 |
| BcoDI | GTCTC | 1 cut(s) | 260 |
| BfaI | CTAG | 3 cut(s) | 186, 351, 503 |
| BfoI | RGCGCY | 1 cut(s) | 13 |
| BisI | GCNGC | 2 cut(s) | 42, 781 |
| BlnI | CCTAGG | 1 cut(s) | 185 |
| BlsI | GCNGC | 2 cut(s) | 43, 782 |
| Bme1390I | CCNGG | 2 cut(s) | 36, 227 |
| Bme18I | GGWCC | 3 cut(s) | 223, 361, 767 |
| BmgT120I | GGNCC | 4 cut(s) | 39, 223, 361, 767 |
| BmiI | GGNNCC | 2 cut(s) | 40, 509 |
| BmrFI | CCNGG | 2 cut(s) | 36, 227 |
| BmrI | ACTGGG | 2 cut(s) | 555, 700 |
| BmsI | GCATC | 1 cut(s) | 149 |
| BmuI | ACTGGG | 2 cut(s) | 555, 700 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BsaBI | GATNNNNATC | 1 cut(s) | 436 |
| BsaJI | CCNNGG | 3 cut(s) | 35, 185, 226 |
| BsaWI | WCCGGW | 2 cut(s) | 169, 769 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 722, 752 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| Bse118I | RCCGGY | 1 cut(s) | 769 |
| Bse1I | ACTGG | 2 cut(s) | 550, 706 |
| Bse8I | GATNNNNATC | 1 cut(s) | 436 |
| BseBI | CCWGG | 2 cut(s) | 36, 227 |
| BseDI | CCNNGG | 3 cut(s) | 35, 185, 226 |
| BseGI | GGATG | 3 cut(s) | 160, 321, 336 |
| BseJI | GATNNNNATC | 1 cut(s) | 436 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| BseNI | ACTGG | 2 cut(s) | 550, 706 |
| BseRI | GAGGAG | 2 cut(s) | 695, 734 |
| BseSI | GKGCMC | 2 cut(s) | 510, 752 |
| BseXI | GCAGC | 1 cut(s) | 767 |
| BsgI | GTGCAG | 1 cut(s) | 411 |
| BshFI | GGCC | 3 cut(s) | 41, 117, 524 |
| BshNI | GGYRCC | 1 cut(s) | 507 |
| BshTI | ACCGGT | 1 cut(s) | 769 |
| BsiSI | CCGG | 2 cut(s) | 170, 770 |
| BslFI | GGGAC | 1 cut(s) | 649 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| BsmAI | GTCTC | 1 cut(s) | 260 |
| BsmBI | CGTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 1 cut(s) | 649 |
| BsmI | GAATGC | 1 cut(s) | 782 |
| BsnI | GGCC | 3 cut(s) | 41, 117, 524 |
| Bsp1286I | GDGCHC | 2 cut(s) | 510, 752 |
| BspACI | CCGC | 3 cut(s) | 4, 42, 164 |
| BspANI | GGCC | 3 cut(s) | 41, 117, 524 |
| BspLI | GGNNCC | 2 cut(s) | 40, 509 |
| BspT107I | GGYRCC | 1 cut(s) | 507 |
| BsrFI | RCCGGY | 1 cut(s) | 769 |
| BsrI | ACTGG | 2 cut(s) | 550, 706 |
| BssAI | RCCGGY | 1 cut(s) | 769 |
| BssECI | CCNNGG | 3 cut(s) | 35, 185, 226 |
| BssNAI | GTATAC | 1 cut(s) | 249 |
| BssT1I | CCWWGG | 1 cut(s) | 185 |
| Bst1107I | GTATAC | 1 cut(s) | 249 |
| Bst2UI | CCWGG | 2 cut(s) | 36, 227 |
| Bst4CI | ACNGT | 5 cut(s) | 29, 95, 475, 486, 583 |
| Bst6I | CTCTTC | 1 cut(s) | 404 |
| BstF5I | GGATG | 3 cut(s) | 160, 321, 336 |
| BstH2I | RGCGCY | 1 cut(s) | 13 |
| BstHHI | GCGC | 1 cut(s) | 12 |
| BstMAI | GTCTC | 1 cut(s) | 260 |
| BstNI | CCWGG | 2 cut(s) | 36, 227 |
| BstSCI | CCNGG | 2 cut(s) | 34, 225 |
| BstSLI | GKGCMC | 2 cut(s) | 510, 752 |
| BstV1I | GCAGC | 1 cut(s) | 767 |
| BstZ17I | GTATAC | 1 cut(s) | 249 |
| BsuRI | GGCC | 3 cut(s) | 41, 117, 524 |
| BtsCI | GGATG | 3 cut(s) | 160, 321, 336 |
| BtsIMutI | CAGTG | 2 cut(s) | 491, 588 |
| CfoI | GCGC | 1 cut(s) | 12 |
| Cfr10I | RCCGGY | 1 cut(s) | 769 |
| Cfr13I | GGNCC | 4 cut(s) | 39, 223, 361, 767 |
| Csp6I | GTAC | 1 cut(s) | 595 |
| CspAI | ACCGGT | 1 cut(s) | 769 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 467, 502 |
| CviAII | CATG | 2 cut(s) | 455, 764 |
| CviQI | GTAC | 1 cut(s) | 595 |
| DraIII | CACNNNGTG | 1 cut(s) | 21 |
| EaeI | YGGCCR | 1 cut(s) | 115 |
| Eam1104I | CTCTTC | 1 cut(s) | 404 |
| EarI | CTCTTC | 1 cut(s) | 404 |
| Eco130I | CCWWGG | 1 cut(s) | 185 |
| Eco32I | GATATC | 2 cut(s) | 67, 419 |
| Eco47I | GGWCC | 3 cut(s) | 223, 361, 767 |
| Eco57I | CTGAAG | 2 cut(s) | 638, 654 |
| EcoO109I | RGGNCCY | 1 cut(s) | 223 |
| EcoRI | GAATTC | 1 cut(s) | 129 |
| EcoRII | CCWGG | 2 cut(s) | 34, 225 |
| EcoRV | GATATC | 2 cut(s) | 67, 419 |
| EcoT14I | CCWWGG | 1 cut(s) | 185 |
| ErhI | CCWWGG | 1 cut(s) | 185 |
| Esp3I | CGTCTC | 1 cut(s) | 260 |
| FaeI | CATG | 2 cut(s) | 458, 767 |
| FaqI | GGGAC | 1 cut(s) | 649 |
| FatI | CATG | 2 cut(s) | 454, 763 |
| FblI | GTMKAC | 2 cut(s) | 160, 248 |
| Fnu4HI | GCNGC | 2 cut(s) | 42, 781 |
| FokI | GGATG | 3 cut(s) | 167, 308, 323 |
| Fsp4HI | GCNGC | 2 cut(s) | 42, 781 |
| FspBI | CTAG | 3 cut(s) | 186, 351, 503 |
| GlaI | GCGC | 1 cut(s) | 11 |
| GluI | GCNGC | 2 cut(s) | 42, 781 |
| HaeII | RGCGCY | 1 cut(s) | 13 |
| HaeIII | GGCC | 3 cut(s) | 41, 117, 524 |
| HapII | CCGG | 2 cut(s) | 170, 770 |
| HhaI | GCGC | 1 cut(s) | 12 |
| Hin1II | CATG | 2 cut(s) | 458, 767 |
| Hin6I | GCGC | 1 cut(s) | 10 |
| HinP1I | GCGC | 1 cut(s) | 10 |
| HinfI | GANTC | 3 cut(s) | 197, 260, 437 |
| HpaII | CCGG | 2 cut(s) | 170, 770 |
| HphI | GGTGA | 1 cut(s) | 736 |
| Hpy166II | GTNNAC | 2 cut(s) | 161, 249 |
| Hpy188I | TCNGA | 4 cut(s) | 145, 265, 361, 372 |
| Hpy188III | TCNNGA | 2 cut(s) | 194, 406 |
| Hpy8I | GTNNAC | 2 cut(s) | 161, 249 |
| HpyAV | CCTTC | 4 cut(s) | 214, 265, 678, 721 |
| HpyCH4III | ACNGT | 5 cut(s) | 29, 95, 475, 486, 583 |
| HpyCH4IV | ACGT | 1 cut(s) | 493 |
| HpyCH4V | TGCA | 3 cut(s) | 212, 392, 763 |
| HpySE526I | ACGT | 1 cut(s) | 493 |
| Hsp92II | CATG | 2 cut(s) | 458, 767 |
| HspAI | GCGC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 1 cut(s) | 767 |
| LweI | GCATC | 1 cut(s) | 149 |
| MaeI | CTAG | 3 cut(s) | 186, 351, 503 |
| MaeII | ACGT | 1 cut(s) | 493 |
| MaeIII | GTNAC | 2 cut(s) | 23, 447 |
| MboII | GAAGA | 6 cut(s) | 421, 541, 544, 572, 616, 644 |
| MhlI | GDGCHC | 2 cut(s) | 510, 752 |
| MlsI | TGGCCA | 1 cut(s) | 117 |
| MluCI | AATT | 3 cut(s) | 129, 149, 215 |
| MluNI | TGGCCA | 1 cut(s) | 117 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MmeI | TCCRAC | 2 cut(s) | 261, 339 |
| Mox20I | TGGCCA | 1 cut(s) | 117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 651 |
| MscI | TGGCCA | 1 cut(s) | 117 |
| MseI | TTAA | 1 cut(s) | 123 |
| Msp20I | TGGCCA | 1 cut(s) | 117 |
| MspI | CCGG | 2 cut(s) | 170, 770 |
| MspR9I | CCNGG | 2 cut(s) | 36, 227 |
| Mva1269I | GAATGC | 1 cut(s) | 782 |
| MvaI | CCWGG | 2 cut(s) | 36, 227 |
| NlaIII | CATG | 2 cut(s) | 458, 767 |
| NlaIV | GGNNCC | 2 cut(s) | 40, 509 |
| PctI | GAATGC | 1 cut(s) | 782 |
| PdmI | GAANNNNTTC | 1 cut(s) | 651 |
| PfeI | GAWTC | 2 cut(s) | 260, 437 |
| PinAI | ACCGGT | 1 cut(s) | 769 |
| PkrI | GCNGC | 2 cut(s) | 43, 782 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| PpuMI | RGGWCCY | 1 cut(s) | 223 |
| Psp5II | RGGWCCY | 1 cut(s) | 223 |
| Psp6I | CCWGG | 2 cut(s) | 34, 225 |
| PspGI | CCWGG | 2 cut(s) | 34, 225 |
| PspN4I | GGNNCC | 2 cut(s) | 40, 509 |
| PspPI | GGNCC | 4 cut(s) | 39, 223, 361, 767 |
| PspPPI | RGGWCCY | 1 cut(s) | 223 |
| RsaI | GTAC | 1 cut(s) | 596 |
| RsaNI | GTAC | 1 cut(s) | 595 |
| SaqAI | TTAA | 1 cut(s) | 123 |
| SatI | GCNGC | 2 cut(s) | 42, 781 |
| Sau96I | GGNCC | 4 cut(s) | 39, 223, 361, 767 |
| SchI | GAGTC | 1 cut(s) | 206 |
| ScrFI | CCNGG | 2 cut(s) | 36, 227 |
| SduI | GDGCHC | 2 cut(s) | 510, 752 |
| SfaNI | GCATC | 1 cut(s) | 149 |
| SinI | GGWCC | 3 cut(s) | 223, 361, 767 |
| SmlI | CTYRAG | 1 cut(s) | 71 |
| SmoI | CTYRAG | 1 cut(s) | 71 |
| Sse9I | AATT | 3 cut(s) | 129, 149, 215 |
| SsiI | CCGC | 3 cut(s) | 4, 42, 164 |
| SspMI | CTAG | 3 cut(s) | 186, 351, 503 |
| StyD4I | CCNGG | 2 cut(s) | 34, 225 |
| StyI | CCWWGG | 1 cut(s) | 185 |
| TaaI | ACNGT | 5 cut(s) | 29, 95, 475, 486, 583 |
| TaiI | ACGT | 1 cut(s) | 496 |
| TaqI | TCGA | 2 cut(s) | 430, 527 |
| TasI | AATT | 3 cut(s) | 129, 149, 215 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 2 cut(s) | 260, 437 |
| Tru1I | TTAA | 1 cut(s) | 123 |
| Tru9I | TTAA | 1 cut(s) | 123 |
| TscAI | CASTG | 2 cut(s) | 491, 588 |
| TseI | GCWGC | 1 cut(s) | 780 |
| TspDTI | ATGAA | 2 cut(s) | 310, 701 |
| TspGWI | ACGGA | 1 cut(s) | 234 |
| TspRI | CASTG | 2 cut(s) | 491, 588 |
| VpaK11BI | GGWCC | 3 cut(s) | 223, 361, 767 |
| XapI | RAATTY | 1 cut(s) | 129 |
| XmaJI | CCTAGG | 1 cut(s) | 185 |
| XmiI | GTMKAC | 2 cut(s) | 160, 248 |
| XmnI | GAANNNNTTC | 1 cut(s) | 651 |
| XspI | CTAG | 3 cut(s) | 186, 351, 503 |