ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 30 - 154 | 3.4e-06 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 407 |
| AciI | CCGC | 5 cut(s) | 35, 200, 203, 420, 430 |
| AclWI | GGATC | 2 cut(s) | 213, 272 |
| AcyI | GRCGYC | 1 cut(s) | 458 |
| AfaI | GTAC | 1 cut(s) | 96 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 199 |
| AluBI | AGCT | 1 cut(s) | 68 |
| AluI | AGCT | 1 cut(s) | 68 |
| Alw21I | GWGCWC | 1 cut(s) | 403 |
| Alw26I | GTCTC | 3 cut(s) | 163, 222, 253 |
| AlwI | GGATC | 2 cut(s) | 213, 272 |
| AoxI | GGCC | 1 cut(s) | 61 |
| AspLEI | GCGC | 2 cut(s) | 226, 345 |
| AspS9I | GGNCC | 1 cut(s) | 382 |
| AsuHPI | GGTGA | 3 cut(s) | 254, 287, 331 |
| AvaII | GGWCC | 1 cut(s) | 382 |
| Bbv12I | GWGCWC | 1 cut(s) | 403 |
| BccI | CCATC | 3 cut(s) | 143, 202, 305 |
| BcoDI | GTCTC | 3 cut(s) | 163, 222, 253 |
| BfaI | CTAG | 3 cut(s) | 65, 239, 362 |
| BfoI | RGCGCY | 1 cut(s) | 227 |
| BisI | GCNGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 1 cut(s) | 202 |
| Bme18I | GGWCC | 1 cut(s) | 382 |
| BmgT120I | GGNCC | 1 cut(s) | 382 |
| BmsI | GCATC | 1 cut(s) | 330 |
| BoxI | GACNNNNGTC | 1 cut(s) | 103 |
| BsaBI | GATNNNNATC | 1 cut(s) | 352 |
| BsaHI | GRCGYC | 1 cut(s) | 458 |
| BsaJI | CCNNGG | 2 cut(s) | 260, 385 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 199 |
| Bse8I | GATNNNNATC | 1 cut(s) | 352 |
| BseDI | CCNNGG | 2 cut(s) | 260, 385 |
| BseGI | GGATG | 2 cut(s) | 97, 316 |
| BseJI | GATNNNNATC | 1 cut(s) | 352 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 199 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseRI | GAGGAG | 2 cut(s) | 241, 438 |
| BshFI | GGCC | 1 cut(s) | 63 |
| BsiHKAI | GWGCWC | 1 cut(s) | 403 |
| BsiSI | CCGG | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 199 |
| BsmAI | GTCTC | 3 cut(s) | 163, 222, 253 |
| BsnI | GGCC | 1 cut(s) | 63 |
| Bsp1286I | GDGCHC | 1 cut(s) | 403 |
| Bsp143I | GATC | 3 cut(s) | 205, 235, 264 |
| Bsp19I | CCATGG | 1 cut(s) | 260 |
| BspACI | CCGC | 5 cut(s) | 35, 200, 203, 420, 430 |
| BspANI | GGCC | 1 cut(s) | 63 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspPI | GGATC | 2 cut(s) | 213, 272 |
| BssECI | CCNNGG | 2 cut(s) | 260, 385 |
| BssMI | GATC | 3 cut(s) | 205, 235, 264 |
| BssNI | GRCGYC | 1 cut(s) | 458 |
| BssT1I | CCWWGG | 2 cut(s) | 260, 385 |
| Bst4CI | ACNGT | 2 cut(s) | 29, 86 |
| BstACI | GRCGYC | 1 cut(s) | 458 |
| BstC8I | GCNNGC | 1 cut(s) | 43 |
| BstDEI | CTNAG | 2 cut(s) | 108, 219 |
| BstDSI | CCRYGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 2 cut(s) | 97, 316 |
| BstH2I | RGCGCY | 1 cut(s) | 227 |
| BstHHI | GCGC | 2 cut(s) | 226, 345 |
| BstKTI | GATC | 3 cut(s) | 208, 238, 267 |
| BstMAI | GTCTC | 3 cut(s) | 163, 222, 253 |
| BstMBI | GATC | 3 cut(s) | 205, 235, 264 |
| BstNSI | RCATGY | 1 cut(s) | 143 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 63 |
| BtgI | CCRYGG | 1 cut(s) | 260 |
| BtsCI | GGATG | 2 cut(s) | 97, 316 |
| BtsI | GCAGTG | 1 cut(s) | 456 |
| BtsIMutI | CAGTG | 1 cut(s) | 456 |
| Cac8I | GCNNGC | 1 cut(s) | 43 |
| CfoI | GCGC | 2 cut(s) | 226, 345 |
| Cfr13I | GGNCC | 1 cut(s) | 382 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CviAII | CATG | 2 cut(s) | 140, 261 |
| CviJI | RGCY | 5 cut(s) | 18, 63, 68, 324, 359 |
| CviKI_1 | RGCY | 5 cut(s) | 18, 63, 68, 324, 359 |
| CviQI | GTAC | 1 cut(s) | 95 |
| DdeI | CTNAG | 2 cut(s) | 108, 219 |
| DpnI | GATC | 3 cut(s) | 207, 237, 266 |
| DpnII | GATC | 3 cut(s) | 205, 235, 264 |
| EciI | GGCGGA | 2 cut(s) | 218, 435 |
| Eco130I | CCWWGG | 2 cut(s) | 260, 385 |
| Eco32I | GATATC | 1 cut(s) | 119 |
| Eco47I | GGWCC | 1 cut(s) | 382 |
| EcoRV | GATATC | 1 cut(s) | 119 |
| EcoT14I | CCWWGG | 2 cut(s) | 260, 385 |
| ErhI | CCWWGG | 2 cut(s) | 260, 385 |
| FaeI | CATG | 2 cut(s) | 143, 264 |
| FaiI | YATR | 5 cut(s) | 123, 125, 141, 262, 466 |
| FatI | CATG | 2 cut(s) | 139, 260 |
| FblI | GTMKAC | 1 cut(s) | 407 |
| Fnu4HI | GCNGC | 1 cut(s) | 201 |
| FokI | GGATG | 2 cut(s) | 104, 323 |
| Fsp4HI | GCNGC | 1 cut(s) | 201 |
| FspBI | CTAG | 3 cut(s) | 65, 239, 362 |
| GlaI | GCGC | 2 cut(s) | 225, 344 |
| GluI | GCNGC | 1 cut(s) | 201 |
| HaeII | RGCGCY | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 63 |
| HapII | CCGG | 1 cut(s) | 325 |
| HhaI | GCGC | 2 cut(s) | 226, 345 |
| Hin1I | GRCGYC | 1 cut(s) | 458 |
| Hin1II | CATG | 2 cut(s) | 143, 264 |
| Hin6I | GCGC | 2 cut(s) | 224, 343 |
| HinP1I | GCGC | 2 cut(s) | 224, 343 |
| HinfI | GANTC | 3 cut(s) | 99, 332, 348 |
| HpaII | CCGG | 1 cut(s) | 325 |
| HphI | GGTGA | 3 cut(s) | 254, 287, 331 |
| Hpy166II | GTNNAC | 2 cut(s) | 295, 408 |
| Hpy188III | TCNNGA | 3 cut(s) | 156, 209, 362 |
| Hpy8I | GTNNAC | 2 cut(s) | 295, 408 |
| Hpy99I | CGWCG | 2 cut(s) | 272, 460 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4III | ACNGT | 2 cut(s) | 29, 86 |
| HpyCH4V | TGCA | 2 cut(s) | 10, 143 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 219 |
| Hsp92I | GRCGYC | 1 cut(s) | 458 |
| Hsp92II | CATG | 2 cut(s) | 143, 264 |
| HspAI | GCGC | 2 cut(s) | 224, 343 |
| Kzo9I | GATC | 3 cut(s) | 205, 235, 264 |
| LpnPI | CCDG | 6 cut(s) | 42, 141, 162, 206, 338, 365 |
| LweI | GCATC | 1 cut(s) | 330 |
| MaeI | CTAG | 3 cut(s) | 65, 239, 362 |
| MaeIII | GTNAC | 1 cut(s) | 275 |
| MalI | GATC | 3 cut(s) | 207, 237, 266 |
| MboI | GATC | 3 cut(s) | 205, 235, 264 |
| MhlI | GDGCHC | 1 cut(s) | 403 |
| MluCI | AATT | 1 cut(s) | 163 |
| MlyI | GAGTC | 1 cut(s) | 93 |
| MnlI | CCTC | 8 cut(s) | 25, 32, 40, 73, 205, 262, 308, 416 |
| MseI | TTAA | 1 cut(s) | 282 |
| MslI | CAYNNNNRTG | 1 cut(s) | 126 |
| MspI | CCGG | 1 cut(s) | 325 |
| NcoI | CCATGG | 1 cut(s) | 260 |
| NdeII | GATC | 3 cut(s) | 205, 235, 264 |
| NlaIII | CATG | 2 cut(s) | 143, 264 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| NspI | RCATGY | 1 cut(s) | 143 |
| PfeI | GAWTC | 2 cut(s) | 332, 348 |
| PkrI | GCNGC | 1 cut(s) | 202 |
| PleI | GAGTC | 1 cut(s) | 93 |
| PpsI | GAGTC | 1 cut(s) | 93 |
| PshAI | GACNNNNGTC | 1 cut(s) | 103 |
| PspPI | GGNCC | 1 cut(s) | 382 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| RseI | CAYNNNNRTG | 1 cut(s) | 126 |
| SaqAI | TTAA | 1 cut(s) | 282 |
| SatI | GCNGC | 1 cut(s) | 201 |
| Sau3AI | GATC | 3 cut(s) | 205, 235, 264 |
| Sau96I | GGNCC | 1 cut(s) | 382 |
| SchI | GAGTC | 1 cut(s) | 93 |
| SduI | GDGCHC | 1 cut(s) | 403 |
| SetI | ASST | 5 cut(s) | 24, 70, 216, 244, 387 |
| SfaNI | GCATC | 1 cut(s) | 330 |
| SinI | GGWCC | 1 cut(s) | 382 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 126 |
| Sse9I | AATT | 1 cut(s) | 163 |
| SsiI | CCGC | 5 cut(s) | 35, 200, 203, 420, 430 |
| SspMI | CTAG | 3 cut(s) | 65, 239, 362 |
| StyI | CCWWGG | 2 cut(s) | 260, 385 |
| TaaI | ACNGT | 2 cut(s) | 29, 86 |
| TaqI | TCGA | 1 cut(s) | 115 |
| TasI | AATT | 1 cut(s) | 163 |
| TauI | GCSGC | 1 cut(s) | 203 |
| TfiI | GAWTC | 2 cut(s) | 332, 348 |
| Tru1I | TTAA | 1 cut(s) | 282 |
| Tru9I | TTAA | 1 cut(s) | 282 |
| TscAI | CASTG | 1 cut(s) | 456 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 2 cut(s) | 176, 345 |
| TspGWI | ACGGA | 2 cut(s) | 201, 221 |
| TspRI | CASTG | 1 cut(s) | 456 |
| VpaK11BI | GGWCC | 1 cut(s) | 382 |
| XbaI | TCTAGA | 1 cut(s) | 361 |
| XceI | RCATGY | 1 cut(s) | 143 |
| XmiI | GTMKAC | 1 cut(s) | 407 |
| XspI | CTAG | 3 cut(s) | 65, 239, 362 |