ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1439 |
| AarI | CACCTGC | 1 cut(s) | 1408 |
| Acc36I | ACCTGC | 1 cut(s) | 1408 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 342, 1403, 1679 |
| AccI | GTMKAC | 1 cut(s) | 1528 |
| AclWI | GGATC | 4 cut(s) | 171, 1438, 1694, 1729 |
| AcsI | RAATTY | 4 cut(s) | 216, 346, 1168, 1331 |
| AcuI | CTGAAG | 2 cut(s) | 834, 1823 |
| AdeI | CACNNNGTG | 2 cut(s) | 342, 1243 |
| AfaI | GTAC | 7 cut(s) | 37, 478, 564, 605, 670, 745, 1149 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 342, 721, 1188, 1403, 1679 |
| AgsI | TTSAA | 6 cut(s) | 211, 517, 773, 861, 1616, 1785 |
| AjnI | CCWGG | 2 cut(s) | 572, 606 |
| Alw21I | GWGCWC | 1 cut(s) | 897 |
| Alw26I | GTCTC | 4 cut(s) | 165, 198, 986, 1012 |
| AlwI | GGATC | 4 cut(s) | 171, 1438, 1694, 1729 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 329 |
| AoxI | GGCC | 3 cut(s) | 119, 254, 285 |
| ApeKI | GCWGC | 5 cut(s) | 151, 466, 1310, 1458, 1853 |
| ApoI | RAATTY | 4 cut(s) | 216, 346, 1168, 1331 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 219, 357 |
| AspS9I | GGNCC | 3 cut(s) | 120, 245, 326 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 311 |
| AvaII | GGWCC | 2 cut(s) | 245, 326 |
| AxyI | CCTNAGG | 1 cut(s) | 289 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 735, 768 |
| BanII | GRGCYC | 1 cut(s) | 897 |
| Bbv12I | GWGCWC | 1 cut(s) | 897 |
| BbvI | GCAGC | 5 cut(s) | 163, 453, 1322, 1470, 1865 |
| BccI | CCATC | 8 cut(s) | 87, 111, 514, 650, 909, 1421, 1549, 1771 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1316, 1350 |
| BciT130I | CCWGG | 2 cut(s) | 574, 608 |
| BciVI | GTATCC | 2 cut(s) | 1291, 1698 |
| BclI | TGATCA | 1 cut(s) | 448 |
| BcoDI | GTCTC | 4 cut(s) | 165, 198, 986, 1012 |
| BfaI | CTAG | 6 cut(s) | 90, 417, 474, 693, 1205, 1320 |
| BfmI | CTRYAG | 1 cut(s) | 1845 |
| BfuAI | ACCTGC | 1 cut(s) | 1408 |
| BfuI | GTATCC | 2 cut(s) | 1291, 1698 |
| BisI | GCNGC | 5 cut(s) | 152, 467, 1311, 1459, 1854 |
| BlpI | GCTNAGC | 1 cut(s) | 1539 |
| BlsI | GCNGC | 5 cut(s) | 153, 468, 1312, 1460, 1855 |
| Bme1390I | CCNGG | 2 cut(s) | 574, 608 |
| Bme18I | GGWCC | 2 cut(s) | 245, 326 |
| BmgT120I | GGNCC | 3 cut(s) | 120, 245, 326 |
| BmiI | GGNNCC | 1 cut(s) | 122 |
| BmrFI | CCNGG | 2 cut(s) | 574, 608 |
| BmsI | GCATC | 5 cut(s) | 436, 559, 844, 1044, 1612 |
| BpmI | CTGGAG | 1 cut(s) | 969 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1539 |
| Bsa29I | ATCGAT | 1 cut(s) | 57 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 342, 721, 1188, 1403, 1679 |
| Bse1I | ACTGG | 5 cut(s) | 952, 1026, 1057, 1159, 1738 |
| Bse21I | CCTNAGG | 1 cut(s) | 289 |
| Bse3DI | GCAATG | 1 cut(s) | 1497 |
| BseBI | CCWGG | 2 cut(s) | 574, 608 |
| BseCI | ATCGAT | 1 cut(s) | 57 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseGI | GGATG | 6 cut(s) | 122, 807, 920, 1432, 1518, 1720 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 342, 721, 1188, 1403, 1679 |
| BseMI | GCAATG | 1 cut(s) | 1497 |
| BseMII | CTCAG | 3 cut(s) | 888, 1530, 1548 |
| BseNI | ACTGG | 5 cut(s) | 952, 1026, 1057, 1159, 1738 |
| BseXI | GCAGC | 5 cut(s) | 163, 453, 1322, 1470, 1865 |
| BseYI | CCCAGC | 2 cut(s) | 1403, 1502 |
| BshFI | GGCC | 3 cut(s) | 121, 256, 287 |
| BshVI | ATCGAT | 1 cut(s) | 57 |
| BsiHKAI | GWGCWC | 1 cut(s) | 897 |
| BslFI | GGGAC | 2 cut(s) | 1204, 1420 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 342, 721, 1188, 1403, 1679 |
| BsmAI | GTCTC | 4 cut(s) | 165, 198, 986, 1012 |
| BsmFI | GGGAC | 2 cut(s) | 1204, 1420 |
| BsnI | GGCC | 3 cut(s) | 121, 256, 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 897 |
| Bsp143I | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1539 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspANI | GGCC | 3 cut(s) | 121, 256, 287 |
| BspCNI | CTCAG | 3 cut(s) | 887, 1531, 1547 |
| BspDI | ATCGAT | 1 cut(s) | 57 |
| BspLI | GGNNCC | 1 cut(s) | 122 |
| BspMAI | CTGCAG | 1 cut(s) | 1849 |
| BspMI | ACCTGC | 1 cut(s) | 1408 |
| BspPI | GGATC | 4 cut(s) | 171, 1438, 1694, 1729 |
| BsrDI | GCAATG | 1 cut(s) | 1497 |
| BsrI | ACTGG | 5 cut(s) | 952, 1026, 1057, 1159, 1738 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssMI | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| BssNAI | GTATAC | 1 cut(s) | 1529 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| Bst1107I | GTATAC | 1 cut(s) | 1529 |
| Bst2UI | CCWGG | 2 cut(s) | 574, 608 |
| Bst4CI | ACNGT | 6 cut(s) | 481, 987, 1045, 1241, 1303, 1656 |
| Bst6I | CTCTTC | 1 cut(s) | 759 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 4 cut(s) | 414, 471, 1561, 1565 |
| BstDEI | CTNAG | 5 cut(s) | 167, 289, 874, 1534, 1539 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 6 cut(s) | 122, 807, 920, 1432, 1518, 1720 |
| BstKTI | GATC | 9 cut(s) | 136, 166, 304, 451, 1222, 1419, 1433, 1689, 1737 |
| BstMAI | GTCTC | 4 cut(s) | 165, 198, 986, 1012 |
| BstMBI | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 971, 1853 |
| BstNI | CCWGG | 2 cut(s) | 574, 608 |
| BstNSI | RCATGY | 1 cut(s) | 416 |
| BstSCI | CCNGG | 2 cut(s) | 572, 606 |
| BstSFI | CTRYAG | 1 cut(s) | 1845 |
| BstV1I | GCAGC | 5 cut(s) | 163, 453, 1322, 1470, 1865 |
| BstX2I | RGATCY | 4 cut(s) | 163, 1430, 1686, 1734 |
| BstYI | RGATCY | 4 cut(s) | 163, 1430, 1686, 1734 |
| BstZ17I | GTATAC | 1 cut(s) | 1529 |
| Bsu15I | ATCGAT | 1 cut(s) | 57 |
| Bsu36I | CCTNAGG | 1 cut(s) | 289 |
| BsuI | GTATCC | 2 cut(s) | 1291, 1698 |
| BsuRI | GGCC | 3 cut(s) | 121, 256, 287 |
| BsuTUI | ATCGAT | 1 cut(s) | 57 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| BtsCI | GGATG | 6 cut(s) | 122, 807, 920, 1432, 1518, 1720 |
| BtsIMutI | CAGTG | 4 cut(s) | 579, 1246, 1308, 1347 |
| BveI | ACCTGC | 1 cut(s) | 1408 |
| Cac8I | GCNNGC | 4 cut(s) | 414, 471, 1561, 1565 |
| CaiI | CAGNNNCTG | 1 cut(s) | 329 |
| Cfr13I | GGNCC | 3 cut(s) | 120, 245, 326 |
| ClaI | ATCGAT | 1 cut(s) | 57 |
| Csp6I | GTAC | 7 cut(s) | 36, 477, 563, 604, 669, 744, 1148 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1746, 1781 |
| CviAII | CATG | 8 cut(s) | 147, 189, 413, 542, 601, 747, 835, 1772 |
| CviQI | GTAC | 7 cut(s) | 36, 477, 563, 604, 669, 744, 1148 |
| DdeI | CTNAG | 5 cut(s) | 167, 289, 874, 1534, 1539 |
| DpnI | GATC | 9 cut(s) | 135, 165, 303, 450, 1221, 1418, 1432, 1688, 1736 |
| DpnII | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| DraIII | CACNNNGTG | 2 cut(s) | 342, 1243 |
| Eam1104I | CTCTTC | 1 cut(s) | 759 |
| EarI | CTCTTC | 1 cut(s) | 759 |
| Ecl136II | GAGCTC | 1 cut(s) | 895 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco147I | AGGCCT | 2 cut(s) | 256, 287 |
| Eco24I | GRGCYC | 1 cut(s) | 897 |
| Eco32I | GATATC | 1 cut(s) | 506 |
| Eco47I | GGWCC | 2 cut(s) | 245, 326 |
| Eco53kI | GAGCTC | 1 cut(s) | 895 |
| Eco57I | CTGAAG | 2 cut(s) | 834, 1823 |
| Eco81I | CCTNAGG | 1 cut(s) | 289 |
| EcoICRI | GAGCTC | 1 cut(s) | 895 |
| EcoO109I | RGGNCCY | 1 cut(s) | 326 |
| EcoRI | GAATTC | 1 cut(s) | 346 |
| EcoRII | CCWGG | 2 cut(s) | 572, 606 |
| EcoRV | GATATC | 1 cut(s) | 506 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| EcoT38I | GRGCYC | 1 cut(s) | 897 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| FaeI | CATG | 8 cut(s) | 150, 192, 416, 545, 604, 750, 838, 1775 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 345, 377 |
| FaqI | GGGAC | 2 cut(s) | 1204, 1420 |
| FatI | CATG | 8 cut(s) | 146, 188, 412, 541, 600, 746, 834, 1771 |
| FauNDI | CATATG | 1 cut(s) | 1545 |
| FbaI | TGATCA | 1 cut(s) | 448 |
| FblI | GTMKAC | 1 cut(s) | 1528 |
| Fnu4HI | GCNGC | 5 cut(s) | 152, 467, 1311, 1459, 1854 |
| FokI | GGATG | 6 cut(s) | 129, 814, 927, 1439, 1525, 1707 |
| FriOI | GRGCYC | 1 cut(s) | 897 |
| Fsp4HI | GCNGC | 5 cut(s) | 152, 467, 1311, 1459, 1854 |
| FspBI | CTAG | 6 cut(s) | 90, 417, 474, 693, 1205, 1320 |
| GluI | GCNGC | 5 cut(s) | 152, 467, 1311, 1459, 1854 |
| GsaI | CCCAGC | 2 cut(s) | 1407, 1506 |
| GsuI | CTGGAG | 1 cut(s) | 969 |
| HaeIII | GGCC | 3 cut(s) | 121, 256, 287 |
| Hin1II | CATG | 8 cut(s) | 150, 192, 416, 545, 604, 750, 838, 1775 |
| HinfI | GANTC | 5 cut(s) | 443, 513, 734, 901, 1008 |
| HphI | GGTGA | 2 cut(s) | 37, 311 |
| Hpy166II | GTNNAC | 5 cut(s) | 77, 321, 579, 807, 1529 |
| Hpy188I | TCNGA | 4 cut(s) | 352, 448, 853, 1842 |
| Hpy188III | TCNNGA | 6 cut(s) | 137, 281, 517, 898, 1320, 1732 |
| Hpy8I | GTNNAC | 5 cut(s) | 77, 321, 579, 807, 1529 |
| HpyAV | CCTTC | 6 cut(s) | 368, 682, 1243, 1677, 1679, 1839 |
| HpyCH4III | ACNGT | 6 cut(s) | 481, 987, 1045, 1241, 1303, 1656 |
| HpyCH4IV | ACGT | 2 cut(s) | 565, 706 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 971, 1853 |
| HpyF3I | CTNAG | 5 cut(s) | 167, 289, 874, 1534, 1539 |
| HpySE526I | ACGT | 2 cut(s) | 565, 706 |
| Hsp92II | CATG | 8 cut(s) | 150, 192, 416, 545, 604, 750, 838, 1775 |
| Ksp22I | TGATCA | 1 cut(s) | 448 |
| Kzo9I | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| Lsp1109I | GCAGC | 5 cut(s) | 163, 453, 1322, 1470, 1865 |
| LweI | GCATC | 5 cut(s) | 436, 559, 844, 1044, 1612 |
| MaeI | CTAG | 6 cut(s) | 90, 417, 474, 693, 1205, 1320 |
| MaeII | ACGT | 2 cut(s) | 565, 706 |
| MaeIII | GTNAC | 5 cut(s) | 420, 440, 695, 1342, 1585 |
| MalI | GATC | 9 cut(s) | 135, 165, 303, 450, 1221, 1418, 1432, 1688, 1736 |
| MboI | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| MflI | RGATCY | 4 cut(s) | 163, 1430, 1686, 1734 |
| MhlI | GDGCHC | 1 cut(s) | 897 |
| MluCI | AATT | 8 cut(s) | 198, 216, 239, 346, 861, 1168, 1331, 1796 |
| MlyI | GAGTC | 3 cut(s) | 437, 895, 1017 |
| MmeI | TCCRAC | 1 cut(s) | 1275 |
| MroXI | GAANNNNTTC | 2 cut(s) | 219, 357 |
| MseI | TTAA | 3 cut(s) | 888, 1413, 1665 |
| MslI | CAYNNNNRTG | 1 cut(s) | 909 |
| MspA1I | CMGCKG | 3 cut(s) | 812, 1538, 1856 |
| MspR9I | CCNGG | 2 cut(s) | 574, 608 |
| MvaI | CCWGG | 2 cut(s) | 574, 608 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 971, 1853 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeI | CATATG | 1 cut(s) | 1545 |
| NdeII | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| NlaIII | CATG | 8 cut(s) | 150, 192, 416, 545, 604, 750, 838, 1775 |
| NlaIV | GGNNCC | 1 cut(s) | 122 |
| NmuCI | GTSAC | 2 cut(s) | 440, 1342 |
| NspI | RCATGY | 1 cut(s) | 416 |
| PaeI | GCATGC | 1 cut(s) | 416 |
| PaqCI | CACCTGC | 1 cut(s) | 1408 |
| PceI | AGGCCT | 2 cut(s) | 256, 287 |
| PdmI | GAANNNNTTC | 2 cut(s) | 219, 357 |
| PfeI | GAWTC | 2 cut(s) | 513, 734 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 342, 1403, 1679 |
| PkrI | GCNGC | 5 cut(s) | 153, 468, 1312, 1460, 1855 |
| PleI | GAGTC | 3 cut(s) | 437, 895, 1016 |
| PpsI | GAGTC | 3 cut(s) | 437, 895, 1016 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| PpuMI | RGGWCCY | 1 cut(s) | 326 |
| PsiI | TTATAA | 1 cut(s) | 1439 |
| Psp124BI | GAGCTC | 1 cut(s) | 897 |
| Psp5II | RGGWCCY | 1 cut(s) | 326 |
| Psp6I | CCWGG | 2 cut(s) | 572, 606 |
| PspFI | CCCAGC | 2 cut(s) | 1403, 1502 |
| PspGI | CCWGG | 2 cut(s) | 572, 606 |
| PspN4I | GGNNCC | 1 cut(s) | 122 |
| PspPI | GGNCC | 3 cut(s) | 120, 245, 326 |
| PspPPI | RGGWCCY | 1 cut(s) | 326 |
| PstI | CTGCAG | 1 cut(s) | 1849 |
| PstNI | CAGNNNCTG | 1 cut(s) | 329 |
| PsuI | RGATCY | 4 cut(s) | 163, 1430, 1686, 1734 |
| PvuII | CAGCTG | 3 cut(s) | 812, 1538, 1856 |
| RsaI | GTAC | 7 cut(s) | 37, 478, 564, 605, 670, 745, 1149 |
| RsaNI | GTAC | 7 cut(s) | 36, 477, 563, 604, 669, 744, 1148 |
| RseI | CAYNNNNRTG | 1 cut(s) | 909 |
| SacI | GAGCTC | 1 cut(s) | 897 |
| SaqAI | TTAA | 3 cut(s) | 888, 1413, 1665 |
| SatI | GCNGC | 5 cut(s) | 152, 467, 1311, 1459, 1854 |
| Sau3AI | GATC | 9 cut(s) | 133, 163, 301, 448, 1219, 1416, 1430, 1686, 1734 |
| Sau96I | GGNCC | 3 cut(s) | 120, 245, 326 |
| SchI | GAGTC | 3 cut(s) | 437, 895, 1017 |
| ScrFI | CCNGG | 2 cut(s) | 574, 608 |
| SduI | GDGCHC | 1 cut(s) | 897 |
| SfaNI | GCATC | 5 cut(s) | 436, 559, 844, 1044, 1612 |
| SfcI | CTRYAG | 1 cut(s) | 1845 |
| SinI | GGWCC | 2 cut(s) | 245, 326 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 909 |
| SphI | GCATGC | 1 cut(s) | 416 |
| Sse9I | AATT | 8 cut(s) | 198, 216, 239, 346, 861, 1168, 1331, 1796 |
| SseBI | AGGCCT | 2 cut(s) | 256, 287 |
| SspMI | CTAG | 6 cut(s) | 90, 417, 474, 693, 1205, 1320 |
| SstI | GAGCTC | 1 cut(s) | 897 |
| StuI | AGGCCT | 2 cut(s) | 256, 287 |
| StyD4I | CCNGG | 2 cut(s) | 572, 606 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaaI | ACNGT | 6 cut(s) | 481, 987, 1045, 1241, 1303, 1656 |
| TaiI | ACGT | 2 cut(s) | 568, 709 |
| TaqI | TCGA | 4 cut(s) | 57, 136, 309, 1060 |
| TasI | AATT | 8 cut(s) | 198, 216, 239, 346, 861, 1168, 1331, 1796 |
| TatI | WGTACW | 1 cut(s) | 476 |
| TfiI | GAWTC | 2 cut(s) | 513, 734 |
| Tru1I | TTAA | 3 cut(s) | 888, 1413, 1665 |
| Tru9I | TTAA | 3 cut(s) | 888, 1413, 1665 |
| TscAI | CASTG | 4 cut(s) | 586, 1246, 1308, 1347 |
| TseFI | GTSAC | 2 cut(s) | 440, 1342 |
| TseI | GCWGC | 5 cut(s) | 151, 466, 1310, 1458, 1853 |
| Tsp45I | GTSAC | 2 cut(s) | 440, 1342 |
| TspDTI | ATGAA | 5 cut(s) | 135, 212, 228, 777, 1486 |
| TspGWI | ACGGA | 1 cut(s) | 814 |
| TspRI | CASTG | 4 cut(s) | 586, 1246, 1308, 1347 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 342, 1403, 1679 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 326 |
| XapI | RAATTY | 4 cut(s) | 216, 346, 1168, 1331 |
| XbaI | TCTAGA | 1 cut(s) | 1319 |
| XceI | RCATGY | 1 cut(s) | 416 |
| XmiI | GTMKAC | 1 cut(s) | 1528 |
| XmnI | GAANNNNTTC | 2 cut(s) | 219, 357 |
| XspI | CTAG | 6 cut(s) | 90, 417, 474, 693, 1205, 1320 |