Rmu_sc0013014.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013014.1
OG0000045
Physical Location & Seq
Reverse (-)
20967 .. 21847
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013014.1_g000009.1.cds

Sequence Viewer

Length: 693 bp
atggacgtactgttctggaattgtcgagggatttgtaatccttctacacggcgtgctttgaagattctaatttcacagcacaaaccaaaactagctttcctaatagaaaccaaaatcagagatgaagcagagtttgatagactacgacgtaacctagggttcgctcatgcggagggggtgatgagtgttggacgagcagggggcctaggacttttttggaatgaggatctgcgagtttcggtccgacagccatctacgacccgatttattgacgtggtggtggacaagggtgtagggtttgtacgttggtgtttcacggggttttatgctaaccctagtgtggcggaccgccaggaatcctgggatcttttgaaggctttgagtgatgaggatagcctgccatgggttgtattgggtgactttaatgagatcttgctagtgttggaaaagttggacagtagaccaaggtcggagaatcagatgcgaggttcggagatgcattgggtcccgattagtcagaggacgagctaccataggttcaagtttgaatcattatggctgcatcatgaggttgttcaccaacaatggggcagaccgatcagtggtcagccaatgttccttgtttcgaagaagatagagcggactagtattgcgttggatgcgtggaaacgtcgtgtctttaaggactggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.87

Weight (kDa)

9.4

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20031 FvH4_1g20032 FvH4_1g28811 FvH4_2g01463 FvH4_2g09182 FvH4_2g28261 FvH4_3g29411 FvH4_3g37471 FvH4_4g14101 FvH4_4g16371 FvH4_4g18821 FvH4_5g18832 FvH4_5g30171 FvH4_6g12302 FvH4_6g16683 FvH4_6g16753 FvH4_6g17021 FvH4_6g18902 FvH4_6g19251 FvH4_6g23332 FvH4_6g28111 FvH4_6g33201 FvH4_6g40361 FvH4_7g09171
prunus_persica Prupe.1G074300_v2.0.a1 Prupe.3G105600_v2.0.a1
pyrus_communis pycom05g10560 pycom07g05620 pycom12424g00110
rosa_chinensis RchiOBHm_Chr1g0334141 RchiOBHm_Chr5g0016671 RchiOBHm_Chr7g0208511 RchiOBHm_Chr7g0231041
rosa_laevigata RLG00000015243
rosa_multiflora Rmu_co7986832.1_g000001 Rmu_co8043772.1_g000001 Rmu_co8043774.1_g000001 Rmu_co8055874.1_g000001 Rmu_co8106278.1_g000001 Rmu_co8122148.1_g000001 Rmu_co8133260.1_g000001 Rmu_co8134318.1_g000001 Rmu_co8183860.1_g000001 Rmu_co8184294.1_g000001 Rmu_co8189556.1_g000001 Rmu_co8236577.1_g000001 Rmu_co8239421.1_g000001 Rmu_co8250871.1_g000001 Rmu_co8300345.1_g000001 Rmu_co8310915.1_g000001 Rmu_co8333321.1_g000001 Rmu_co8334427.1_g000001 Rmu_co8360619.1_g000001 Rmu_co8360619.1_g000002 Rmu_co8366931.1_g000001 Rmu_co8375289.1_g000001 Rmu_co8406881.1_g000001 Rmu_co8444187.1_g000001 Rmu_co8464563.1_g000001 Rmu_co8505097.1_g000001 Rmu_sc0000031.1_g000042 Rmu_sc0000031.1_g000043 Rmu_sc0000053.1_g000008 Rmu_sc0000104.1_g000026 Rmu_sc0000115.1_g000003 Rmu_sc0000148.1_g000077 Rmu_sc0000257.1_g000001 Rmu_sc0000311.1_g000016 Rmu_sc0000347.1_g000035 Rmu_sc0000365.1_g000048 Rmu_sc0000389.1_g000027 Rmu_sc0000399.1_g000009 Rmu_sc0000399.1_g000015 Rmu_sc0000408.1_g000016 Rmu_sc0000452.1_g000007 Rmu_sc0000458.1_g000015 Rmu_sc0000470.1_g000010 Rmu_sc0000498.1_g000067 Rmu_sc0000499.1_g000016 Rmu_sc0000536.1_g000029 Rmu_sc0000539.1_g000015 Rmu_sc0000544.1_g000005 Rmu_sc0000571.1_g000013 Rmu_sc0000573.1_g000013 Rmu_sc0000573.1_g000014 Rmu_sc0000600.1_g000043 Rmu_sc0000631.1_g000014 Rmu_sc0000657.1_g000014 Rmu_sc0000711.1_g000005 Rmu_sc0000711.1_g000059 Rmu_sc0000717.1_g000024 Rmu_sc0000717.1_g000025 Rmu_sc0000737.1_g000001 Rmu_sc0000744.1_g000081 Rmu_sc0000757.1_g000011 Rmu_sc0000784.1_g000026 Rmu_sc0000800.1_g000010 Rmu_sc0000816.1_g000017 Rmu_sc0000816.1_g000022 Rmu_sc0000870.1_g000047 Rmu_sc0000898.1_g000107 Rmu_sc0000929.1_g000011 Rmu_sc0001009.1_g000034 Rmu_sc0001059.1_g000021 Rmu_sc0001062.1_g000003 Rmu_sc0001124.1_g000027 Rmu_sc0001169.1_g000015 Rmu_sc0001169.1_g000016 Rmu_sc0001176.1_g000011 Rmu_sc0001176.1_g000012 Rmu_sc0001200.1_g000058 Rmu_sc0001200.1_g000059 Rmu_sc0001211.1_g000132 Rmu_sc0001250.1_g000019 Rmu_sc0001288.1_g000007 Rmu_sc0001416.1_g000012 Rmu_sc0001455.1_g000033 Rmu_sc0001461.1_g000077 Rmu_sc0001514.1_g000008 Rmu_sc0001531.1_g000015 Rmu_sc0001531.1_g000016 Rmu_sc0001548.1_g000037 Rmu_sc0001576.1_g000031 Rmu_sc0001615.1_g000011 Rmu_sc0001648.1_g000052 Rmu_sc0001648.1_g000053 Rmu_sc0001694.1_g000025 Rmu_sc0001696.1_g000022 Rmu_sc0001716.1_g000025 Rmu_sc0001799.1_g000003 Rmu_sc0001801.1_g000010 Rmu_sc0001801.1_g000011 Rmu_sc0001814.1_g000007 Rmu_sc0001863.1_g000030 Rmu_sc0001891.1_g000056 Rmu_sc0001891.1_g000057 Rmu_sc0001891.1_g000058 Rmu_sc0001940.1_g000032 Rmu_sc0001966.1_g000020 Rmu_sc0001982.1_g000009 Rmu_sc0001998.1_g000020 Rmu_sc0001998.1_g000021 Rmu_sc0002000.1_g000008 Rmu_sc0002023.1_g000013 Rmu_sc0002038.1_g000015 Rmu_sc0002038.1_g000016 Rmu_sc0002043.1_g000008 Rmu_sc0002063.1_g000010 Rmu_sc0002094.1_g000035 Rmu_sc0002099.1_g000007 Rmu_sc0002300.1_g000012 Rmu_sc0002316.1_g000063 Rmu_sc0002485.1_g000006 Rmu_sc0002520.1_g000010 Rmu_sc0002539.1_g000041 Rmu_sc0002665.1_g000012 Rmu_sc0002858.1_g000005 Rmu_sc0002882.1_g000038 Rmu_sc0002882.1_g000039 Rmu_sc0002890.1_g000016 Rmu_sc0002931.1_g000024 Rmu_sc0002942.1_g000022 Rmu_sc0003002.1_g000051 Rmu_sc0003012.1_g000030 Rmu_sc0003147.1_g000014 Rmu_sc0003156.1_g000006 Rmu_sc0003162.1_g000006 Rmu_sc0003261.1_g000027 Rmu_sc0003399.1_g000008 Rmu_sc0003500.1_g000004 Rmu_sc0003514.1_g000006 Rmu_sc0003764.1_g000013 Rmu_sc0003764.1_g000014 Rmu_sc0003764.1_g000015 Rmu_sc0003776.1_g000039 Rmu_sc0003829.1_g000001 Rmu_sc0003834.1_g000016 Rmu_sc0003834.1_g000017 Rmu_sc0003834.1_g000019 Rmu_sc0003834.1_g000020 Rmu_sc0003929.1_g000011 Rmu_sc0004003.1_g000002 Rmu_sc0004005.1_g000002 Rmu_sc0004240.1_g000001 Rmu_sc0004240.1_g000002 Rmu_sc0004340.1_g000023 Rmu_sc0004373.1_g000008 Rmu_sc0004373.1_g000009 Rmu_sc0004413.1_g000030 Rmu_sc0004467.1_g000011 Rmu_sc0004473.1_g000010 Rmu_sc0004577.1_g000023 Rmu_sc0004596.1_g000040 Rmu_sc0004711.1_g000024 Rmu_sc0004714.1_g000005 Rmu_sc0004720.1_g000012 Rmu_sc0004730.1_g000002 Rmu_sc0004733.1_g000004 Rmu_sc0004763.1_g000001 Rmu_sc0004768.1_g000010 Rmu_sc0004889.1_g000007 Rmu_sc0004889.1_g000008 Rmu_sc0004904.1_g000005 Rmu_sc0004961.1_g000003 Rmu_sc0004961.1_g000009 Rmu_sc0004990.1_g000007 Rmu_sc0005104.1_g000004 Rmu_sc0005122.1_g000016 Rmu_sc0005122.1_g000017 Rmu_sc0005229.1_g000013 Rmu_sc0005308.1_g000009 Rmu_sc0005363.1_g000010 Rmu_sc0005363.1_g000011 Rmu_sc0005382.1_g000001 Rmu_sc0005389.1_g000023 Rmu_sc0005514.1_g000008 Rmu_sc0005593.1_g000014 Rmu_sc0005705.1_g000010 Rmu_sc0005722.1_g000010 Rmu_sc0005745.1_g000027 Rmu_sc0005745.1_g000028 Rmu_sc0005802.1_g000023 Rmu_sc0005899.1_g000002 Rmu_sc0005952.1_g000001 Rmu_sc0005978.1_g000007 Rmu_sc0006158.1_g000001 Rmu_sc0006233.1_g000035 Rmu_sc0006343.1_g000009 Rmu_sc0006367.1_g000005 Rmu_sc0006444.1_g000007 Rmu_sc0006445.1_g000017 Rmu_sc0006493.1_g000015 Rmu_sc0006552.1_g000002 Rmu_sc0006695.1_g000054 Rmu_sc0006720.1_g000006 Rmu_sc0006722.1_g000015 Rmu_sc0007029.1_g000016 Rmu_sc0007080.1_g000001 Rmu_sc0007328.1_g000007 Rmu_sc0007341.1_g000003 Rmu_sc0007366.1_g000006 Rmu_sc0007421.1_g000003 Rmu_sc0007652.1_g000013 Rmu_sc0007716.1_g000002 Rmu_sc0007790.1_g000016 Rmu_sc0007802.1_g000002 Rmu_sc0008049.1_g000037 Rmu_sc0008087.1_g000009 Rmu_sc0008509.1_g000006 Rmu_sc0008676.1_g000002 Rmu_sc0008800.1_g000012 Rmu_sc0009053.1_g000003 Rmu_sc0009053.1_g000004 Rmu_sc0009241.1_g000002 Rmu_sc0009538.1_g000016 Rmu_sc0009568.1_g000001 Rmu_sc0009579.1_g000014 Rmu_sc0009742.1_g000001 Rmu_sc0009895.1_g000025 Rmu_sc0010202.1_g000006 Rmu_sc0010334.1_g000001 Rmu_sc0010483.1_g000022 Rmu_sc0010901.1_g000001 Rmu_sc0010937.1_g000008 Rmu_sc0011079.1_g000001 Rmu_sc0011173.1_g000012 Rmu_sc0011609.1_g000001 Rmu_sc0011698.1_g000013 Rmu_sc0011778.1_g000018 Rmu_sc0012115.1_g000006 Rmu_sc0012403.1_g000018 Rmu_sc0012426.1_g000003 Rmu_sc0012426.1_g000004 Rmu_sc0012705.1_g000001 Rmu_sc0012897.1_g000003 Rmu_sc0013014.1_g000009 Rmu_sc0013188.1_g000003 Rmu_sc0013612.1_g000007 Rmu_sc0013612.1_g000008 Rmu_sc0014076.1_g000002 Rmu_sc0014162.1_g000018 Rmu_sc0014206.1_g000008 Rmu_sc0014426.1_g000003 Rmu_sc0015447.1_g000006 Rmu_sc0016197.1_g000003 Rmu_sc0016546.1_g000001 Rmu_sc0016546.1_g000002 Rmu_sc0017848.1_g000001 Rmu_sc0017848.1_g000002 Rmu_sc0018300.1_g000001 Rmu_sc0018325.1_g000008 Rmu_sc0019396.1_g000002 Rmu_sc0019815.1_g000003 Rmu_sc0022463.1_g000004 Rmu_sc0023070.1_g000009 Rmu_sc0023965.1_g000004 Rmu_sc0024072.1_g000004 Rmu_sc0024195.1_g000017 Rmu_sc0024446.1_g000004 Rmu_sc0026134.1_g000001 Rmu_sc0026279.1_g000001 Rmu_sc0026736.1_g000001 Rmu_sc0027357.1_g000001 Rmu_sc0027357.1_g000002 Rmu_sc0027596.1_g000001 Rmu_sc0027596.1_g000002 Rmu_sc0027778.1_g000005 Rmu_sc0027873.1_g000001 Rmu_sc0028295.1_g000001 Rmu_sc0028706.1_g000002 Rmu_sc0034015.1_g000001 Rmu_sc0034598.1_g000002 Rmu_sc0035534.1_g000001 Rmu_sc0036127.1_g000001 Rmu_sc0036172.1_g000001 Rmu_sc0036279.1_g000002 Rmu_sc0036593.1_g000001 Rmu_sc0036891.1_g000001 Rmu_sc0041752.1_g000001 Rmu_sc0041761.1_g000001 Rmu_sc0042299.1_g000001 Rmu_sc0042653.1_g000003 Rmu_ssc0000011.1_g000004 Rmu_ssc0000035.1_g000004 Rmu_ssc0000064.1_g000029 Rmu_ssc0000201.1_g000005 Rmu_ssc0000201.1_g000010 Rmu_ssc0000201.1_g000011 Rmu_ssc0000342.1_g000008 Rmu_ssc0000342.1_g000019 Rmu_ssc0000381.1_g000002 Rmu_ssc0000432.1_g000083
rosa_roxburghii Rroxscaffold_1G00000890 Rroxscaffold_1G00045620 Rroxscaffold_1G00061860 Rroxscaffold_4G00303310 Rroxscaffold_4G00331420 Rroxscaffold_6G00406060
rosa_rugosa Rorug01G0072600 Rorug01G0113600 Rorug01G0113700 Rorug01G0167100 Rorug01G0199300 Rorug01G0274300 Rorug01G0312600 Rorug01G0383700 Rorug02G0026100.1 Rorug02G0173700 Rorug02G0211900 Rorug02G0212100 Rorug02G0341000 Rorug02G0634200 Rorug03G0098500 Rorug03G0106400 Rorug03G0144900 Rorug03G0145000 Rorug03G0155700 Rorug03G0155800 Rorug03G0170300 Rorug03G0184200 Rorug03G0213700 Rorug03G0229300 Rorug03G0232700.1 Rorug03G0232800 Rorug03G0324800 Rorug03G0334900 Rorug04G0049700 Rorug04G0067800 Rorug04G0197400 Rorug04G0235600 Rorug05G0038600 Rorug05G0081400 Rorug05G0089200 Rorug05G0157400 Rorug05G0157900 Rorug05G0157900 Rorug05G0186600 Rorug05G0214300 Rorug05G0267700 Rorug05G0309100 Rorug05G0370800 Rorug05G0419000 Rorug05G0515800 Rorug06G0040600 Rorug06G0069100 Rorug06G0142200 Rorug06G0142800 Rorug06G0144400 Rorug06G0276500 Rorug06G0444200 Rorug06G0495800 Rorug07G0017900 Rorug07G0030300 Rorug07G0031900 Rorug07G0032000 Rorug07G0051000 Rorug07G0053700 Rorug07G0116200 Rorug07G0164400 Rorug07G0236200 Rorug07G0308600 Rorug07G0313900
rosa_samantha Rh1CG051600 Rh1CG098200 Rh1CG101900 Rh1DG109900 Rh2BG354600 Rh2CG366900 Rh2DG048400 Rh2DG464500 Rh2DG484000 Rh3AG277100 Rh3AG286800 Rh3BG229500 Rh3DG264200 Rh4BG155600 Rh5AG127200 Rh5AG520800 Rh5BG116100 Rh6DG091200 Rh6DG091300 Rh7AG106700 Rh7AG343500 Rh7BG179600 Rh7BG337400 Rh7CG299700
rosa_wichuraiana Rw1G026260 Rw5G047800 Rw6G003270 Rw6G025380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 640
AccI GTMKAC 1 cut(s) 460
AciI CCGC 4 cut(s) 170, 344, 349, 640
AclWI GGATC 2 cut(s) 234, 372
AdeI CACNNNGTG 1 cut(s) 53
AfaI GTAC 2 cut(s) 9, 303
AfiI CCNNNNNNNGG 4 cut(s) 340, 403, 586, 602
AgsI TTSAA 4 cut(s) 61, 373, 541, 548
AhlI ACTAGT 1 cut(s) 644
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 2 cut(s) 351, 359
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 95, 528
AluI AGCT 2 cut(s) 95, 528
AlwI GGATC 2 cut(s) 234, 372
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 559
AspA2I CCTAGG 2 cut(s) 154, 205
AspS9I GGNCC 4 cut(s) 202, 241, 346, 505
AsuHPI GGTGA 3 cut(s) 190, 428, 569
AsuII TTCGAA 1 cut(s) 626
AvaII GGWCC 3 cut(s) 241, 346, 505
AvrII CCTAGG 2 cut(s) 154, 205
BbvI GCAGC 1 cut(s) 546
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 353, 361
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 6 cut(s) 92, 155, 206, 336, 437, 645
BglII AGATCT 1 cut(s) 429
BisI GCNGC 1 cut(s) 560
BlnI CCTAGG 2 cut(s) 154, 205
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 353, 361
Bme18I GGWCC 3 cut(s) 241, 346, 505
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 4 cut(s) 202, 241, 346, 505
BmiI GGNNCC 3 cut(s) 203, 506, 507
BmrFI CCNGG 2 cut(s) 353, 361
BmsI GCATC 4 cut(s) 471, 486, 571, 649
BoxI GACNNNNGTC 1 cut(s) 466
Bpu14I TTCGAA 1 cut(s) 626
BsaJI CCNNGG 5 cut(s) 154, 205, 360, 401, 464
Bsc4I CCNNNNNNNGG 4 cut(s) 340, 403, 586, 602
Bse1I ACTGG 1 cut(s) 692
BseBI CCWGG 2 cut(s) 353, 361
BseDI CCNNGG 5 cut(s) 154, 205, 360, 401, 464
BseGI GGATG 1 cut(s) 664
BseLI CCNNNNNNNGG 4 cut(s) 340, 403, 586, 602
BseNI ACTGG 1 cut(s) 692
BseXI GCAGC 1 cut(s) 546
BshFI GGCC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 4 cut(s) 340, 403, 586, 602
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 626
Bsp143I GATC 4 cut(s) 226, 364, 429, 597
Bsp19I CCATGG 1 cut(s) 401
BspACI CCGC 4 cut(s) 170, 344, 349, 640
BspANI GGCC 1 cut(s) 204
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 203, 506, 507
BspPI GGATC 2 cut(s) 234, 372
BspT104I TTCGAA 1 cut(s) 626
BsrBI CCGCTC 1 cut(s) 640
BsrI ACTGG 1 cut(s) 692
BssECI CCNNGG 5 cut(s) 154, 205, 360, 401, 464
BssMI GATC 4 cut(s) 226, 364, 429, 597
BssT1I CCWWGG 4 cut(s) 154, 205, 401, 464
Bst2UI CCWGG 2 cut(s) 353, 361
Bst4CI ACNGT 2 cut(s) 12, 458
BstBI TTCGAA 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 54, 398
BstDSI CCRYGG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 664
BstKTI GATC 4 cut(s) 229, 367, 432, 600
BstMBI GATC 4 cut(s) 226, 364, 429, 597
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNI CCWGG 2 cut(s) 353, 361
BstPAI GACNNNNGTC 1 cut(s) 466
BstSCI CCNGG 2 cut(s) 351, 359
BstV1I GCAGC 1 cut(s) 546
BstX2I RGATCY 3 cut(s) 226, 364, 429
BstYI RGATCY 3 cut(s) 226, 364, 429
BsuRI GGCC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 401
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 664
BtsIMutI CAGTG 1 cut(s) 607
Cac8I GCNNGC 2 cut(s) 54, 398
CciI TCATGA 1 cut(s) 565
Cfr13I GGNCC 4 cut(s) 202, 241, 346, 505
CpoI CGGWCCG 2 cut(s) 241, 346
Csp6I GTAC 2 cut(s) 8, 302
CspI CGGWCCG 2 cut(s) 241, 346
CviAII CATG 3 cut(s) 167, 402, 566
CviJI RGCY 8 cut(s) 95, 204, 250, 377, 396, 528, 559, 610
CviKI_1 RGCY 8 cut(s) 95, 204, 250, 377, 396, 528, 559, 610
CviQI GTAC 2 cut(s) 8, 302
DpnI GATC 4 cut(s) 228, 366, 431, 599
DpnII GATC 4 cut(s) 226, 364, 429, 597
DraIII CACNNNGTG 1 cut(s) 53
EciI GGCGGA 1 cut(s) 359
Eco130I CCWWGG 4 cut(s) 154, 205, 401, 464
Eco47I GGWCC 3 cut(s) 241, 346, 505
EcoO109I RGGNCCY 2 cut(s) 202, 505
EcoRII CCWGG 2 cut(s) 351, 359
EcoT14I CCWWGG 4 cut(s) 154, 205, 401, 464
EcoT22I ATGCAT 1 cut(s) 501
ErhI CCWWGG 4 cut(s) 154, 205, 401, 464
FaeI CATG 3 cut(s) 170, 405, 569
FaiI YATR 6 cut(s) 168, 327, 403, 534, 556, 567
FaqI GGGAC 1 cut(s) 491
FatI CATG 3 cut(s) 166, 401, 565
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 1 cut(s) 671
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 6 cut(s) 92, 155, 206, 336, 437, 645
GluI GCNGC 1 cut(s) 560
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 3 cut(s) 170, 405, 569
HinfI GANTC 4 cut(s) 64, 356, 475, 548
HphI GGTGA 3 cut(s) 190, 428, 569
Hpy166II GTNNAC 3 cut(s) 283, 461, 577
Hpy188I TCNGA 6 cut(s) 119, 245, 472, 480, 493, 519
Hpy188III TCNNGA 3 cut(s) 16, 508, 566
Hpy8I GTNNAC 3 cut(s) 283, 461, 577
Hpy99I CGWCG 2 cut(s) 150, 675
HpyAV CCTTC 2 cut(s) 51, 367
HpyCH4III ACNGT 2 cut(s) 12, 458
HpyCH4IV ACGT 5 cut(s) 6, 148, 273, 304, 670
HpyCH4V TGCA 2 cut(s) 499, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpySE526I ACGT 5 cut(s) 6, 148, 273, 304, 670
Hsp92II CATG 3 cut(s) 170, 405, 569
KflI GGGWCCC 1 cut(s) 505
Kzo9I GATC 4 cut(s) 226, 364, 429, 597
LpnPI CCDG 7 cut(s) 183, 338, 346, 365, 373, 410, 673
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 4 cut(s) 471, 486, 571, 649
MaeI CTAG 6 cut(s) 92, 155, 206, 336, 437, 645
MaeII ACGT 5 cut(s) 6, 148, 273, 304, 670
MaeIII GTNAC 2 cut(s) 149, 416
MalI GATC 4 cut(s) 228, 366, 431, 599
MbiI CCGCTC 1 cut(s) 640
MboI GATC 4 cut(s) 226, 364, 429, 597
MboII GAAGA 3 cut(s) 73, 640, 643
MflI RGATCY 3 cut(s) 226, 364, 429
MluCI AATT 2 cut(s) 19, 69
MmeI TCCRAC 6 cut(s) 169, 268, 423, 432, 450, 636
MnlI CCTC 7 cut(s) 20, 166, 217, 382, 479, 513, 562
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 2 cut(s) 423, 681
MspR9I CCNGG 2 cut(s) 353, 361
MvaI CCWGG 2 cut(s) 353, 361
MwoI GCNNNNNNNGC 1 cut(s) 659
NcoI CCATGG 1 cut(s) 401
NdeII GATC 4 cut(s) 226, 364, 429, 597
NlaIII CATG 3 cut(s) 170, 405, 569
NlaIV GGNNCC 3 cut(s) 203, 506, 507
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 501
NspV TTCGAA 1 cut(s) 626
PagI TCATGA 1 cut(s) 565
PfeI GAWTC 4 cut(s) 64, 356, 475, 548
PkrI GCNGC 1 cut(s) 561
PpuMI RGGWCCY 1 cut(s) 505
PshAI GACNNNNGTC 1 cut(s) 466
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 351, 359
PspGI CCWGG 2 cut(s) 351, 359
PspN4I GGNNCC 3 cut(s) 203, 506, 507
PspPI GGNCC 4 cut(s) 202, 241, 346, 505
PspPPI RGGWCCY 1 cut(s) 505
PsuI RGATCY 3 cut(s) 226, 364, 429
RsaI GTAC 2 cut(s) 9, 303
RsaNI GTAC 2 cut(s) 8, 302
Rsr2I CGGWCCG 2 cut(s) 241, 346
RsrII CGGWCCG 2 cut(s) 241, 346
SaqAI TTAA 2 cut(s) 423, 681
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 4 cut(s) 226, 364, 429, 597
Sau96I GGNCC 4 cut(s) 202, 241, 346, 505
ScrFI CCNGG 2 cut(s) 353, 361
SfaNI GCATC 4 cut(s) 471, 486, 571, 649
SfuI TTCGAA 1 cut(s) 626
SinI GGWCC 3 cut(s) 241, 346, 505
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 2 cut(s) 19, 69
SsiI CCGC 4 cut(s) 170, 344, 349, 640
SspMI CTAG 6 cut(s) 92, 155, 206, 336, 437, 645
StyD4I CCNGG 2 cut(s) 351, 359
StyI CCWWGG 4 cut(s) 154, 205, 401, 464
TaaI ACNGT 2 cut(s) 12, 458
TaiI ACGT 5 cut(s) 9, 151, 276, 307, 673
TaqI TCGA 2 cut(s) 25, 626
TaqII GACCGA 2 cut(s) 229, 610
TasI AATT 2 cut(s) 19, 69
TfiI GAWTC 4 cut(s) 64, 356, 475, 548
Tru1I TTAA 2 cut(s) 423, 681
Tru9I TTAA 2 cut(s) 423, 681
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 1 cut(s) 607
VpaK11BI GGWCC 3 cut(s) 241, 346, 505
XmaJI CCTAGG 2 cut(s) 154, 205
XmiI GTMKAC 1 cut(s) 460
XspI CTAG 6 cut(s) 92, 155, 206, 336, 437, 645
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.