ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 687 |
| AccB1I | GGYRCC | 1 cut(s) | 307 |
| AccI | GTMKAC | 2 cut(s) | 353, 692 |
| AccII | CGCG | 1 cut(s) | 358 |
| AciI | CCGC | 2 cut(s) | 54, 305 |
| AclWI | GGATC | 5 cut(s) | 79, 144, 160, 572, 743 |
| AcsI | RAATTY | 2 cut(s) | 499, 670 |
| AfaI | GTAC | 1 cut(s) | 211 |
| AflII | CTTAAG | 1 cut(s) | 635 |
| AflIII | ACRYGT | 1 cut(s) | 356 |
| AgsI | TTSAA | 4 cut(s) | 92, 456, 725, 779 |
| AjnI | CCWGG | 1 cut(s) | 555 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 128, 160 |
| AluBI | AGCT | 2 cut(s) | 187, 299 |
| AluI | AGCT | 2 cut(s) | 187, 299 |
| AlwI | GGATC | 5 cut(s) | 79, 144, 160, 572, 743 |
| AoxI | GGCC | 1 cut(s) | 553 |
| ApeKI | GCWGC | 3 cut(s) | 403, 406, 617 |
| ApoI | RAATTY | 2 cut(s) | 499, 670 |
| AseI | ATTAAT | 1 cut(s) | 443 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 468 |
| AspLEI | GCGC | 2 cut(s) | 688, 718 |
| AsuC2I | CCSGG | 1 cut(s) | 425 |
| AsuHPI | GGTGA | 4 cut(s) | 34, 68, 328, 718 |
| BaeGI | GKGCMC | 1 cut(s) | 240 |
| BanI | GGYRCC | 1 cut(s) | 307 |
| BbvI | GCAGC | 3 cut(s) | 415, 418, 629 |
| BccI | CCATC | 2 cut(s) | 62, 223 |
| BciT130I | CCWGG | 1 cut(s) | 557 |
| BciVI | GTATCC | 2 cut(s) | 431, 741 |
| BclI | TGATCA | 1 cut(s) | 274 |
| BcnI | CCSGG | 1 cut(s) | 425 |
| BfaI | CTAG | 4 cut(s) | 140, 264, 300, 429 |
| BfrI | CTTAAG | 1 cut(s) | 635 |
| BfuI | GTATCC | 2 cut(s) | 431, 741 |
| BisI | GCNGC | 3 cut(s) | 404, 407, 618 |
| BlsI | GCNGC | 3 cut(s) | 405, 408, 619 |
| Bme1390I | CCNGG | 2 cut(s) | 425, 557 |
| BmiI | GGNNCC | 2 cut(s) | 146, 309 |
| BmrFI | CCNGG | 2 cut(s) | 425, 557 |
| BmsI | GCATC | 1 cut(s) | 488 |
| BpuEI | CTTGAG | 1 cut(s) | 681 |
| BpuMI | CCSGG | 1 cut(s) | 425 |
| BsaJI | CCNNGG | 2 cut(s) | 14, 148 |
| Bse1I | ACTGG | 2 cut(s) | 438, 471 |
| BseBI | CCWGG | 1 cut(s) | 557 |
| BseDI | CCNNGG | 2 cut(s) | 14, 148 |
| BseGI | GGATG | 4 cut(s) | 454, 479, 550, 646 |
| BseMII | CTCAG | 1 cut(s) | 615 |
| BseNI | ACTGG | 2 cut(s) | 438, 471 |
| BseRI | GAGGAG | 1 cut(s) | 716 |
| BseSI | GKGCMC | 1 cut(s) | 240 |
| BseXI | GCAGC | 3 cut(s) | 415, 418, 629 |
| BsgI | GTGCAG | 1 cut(s) | 636 |
| Bsh1236I | CGCG | 1 cut(s) | 358 |
| BshFI | GGCC | 1 cut(s) | 555 |
| BshNI | GGYRCC | 1 cut(s) | 307 |
| BsiSI | CCGG | 1 cut(s) | 424 |
| BsmI | GAATGC | 1 cut(s) | 765 |
| BsnI | GGCC | 1 cut(s) | 555 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| Bsp19I | CCATGG | 1 cut(s) | 14 |
| BspACI | CCGC | 2 cut(s) | 54, 305 |
| BspANI | GGCC | 1 cut(s) | 555 |
| BspCNI | CTCAG | 1 cut(s) | 614 |
| BspFNI | CGCG | 1 cut(s) | 358 |
| BspLI | GGNNCC | 2 cut(s) | 146, 309 |
| BspPI | GGATC | 5 cut(s) | 79, 144, 160, 572, 743 |
| BspT107I | GGYRCC | 1 cut(s) | 307 |
| BspTI | CTTAAG | 1 cut(s) | 635 |
| BsrI | ACTGG | 2 cut(s) | 438, 471 |
| BssECI | CCNNGG | 2 cut(s) | 14, 148 |
| BssMI | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| BssNAI | GTATAC | 2 cut(s) | 354, 693 |
| BssT1I | CCWWGG | 2 cut(s) | 14, 148 |
| Bst1107I | GTATAC | 2 cut(s) | 354, 693 |
| Bst2UI | CCWGG | 1 cut(s) | 557 |
| Bst4CI | ACNGT | 1 cut(s) | 614 |
| Bst6I | CTCTTC | 1 cut(s) | 15 |
| BstAFI | CTTAAG | 1 cut(s) | 635 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 1 cut(s) | 401 |
| BstDEI | CTNAG | 6 cut(s) | 175, 243, 460, 585, 601, 738 |
| BstDSI | CCRYGG | 1 cut(s) | 14 |
| BstF5I | GGATG | 4 cut(s) | 454, 479, 550, 646 |
| BstFNI | CGCG | 1 cut(s) | 358 |
| BstHHI | GCGC | 2 cut(s) | 688, 718 |
| BstKTI | GATC | 7 cut(s) | 74, 83, 139, 155, 277, 567, 751 |
| BstMBI | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 412 |
| BstNI | CCWGG | 1 cut(s) | 557 |
| BstSCI | CCNGG | 2 cut(s) | 423, 555 |
| BstSLI | GKGCMC | 1 cut(s) | 240 |
| BstUI | CGCG | 1 cut(s) | 358 |
| BstV1I | GCAGC | 3 cut(s) | 415, 418, 629 |
| BstX2I | RGATCY | 1 cut(s) | 136 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 222 |
| BstYI | RGATCY | 1 cut(s) | 136 |
| BstZ17I | GTATAC | 2 cut(s) | 354, 693 |
| BsuI | GTATCC | 2 cut(s) | 431, 741 |
| BsuRI | GGCC | 1 cut(s) | 555 |
| BtgI | CCRYGG | 1 cut(s) | 14 |
| BtsCI | GGATG | 4 cut(s) | 454, 479, 550, 646 |
| BtsI | GCAGTG | 2 cut(s) | 210, 627 |
| BtsIMutI | CAGTG | 3 cut(s) | 210, 619, 627 |
| Cac8I | GCNNGC | 1 cut(s) | 401 |
| CfoI | GCGC | 2 cut(s) | 688, 718 |
| CseI | GACGC | 1 cut(s) | 239 |
| Csp6I | GTAC | 1 cut(s) | 210 |
| CviAII | CATG | 3 cut(s) | 15, 278, 509 |
| CviJI | RGCY | 6 cut(s) | 113, 187, 299, 428, 555, 641 |
| CviKI_1 | RGCY | 6 cut(s) | 113, 187, 299, 428, 555, 641 |
| CviQI | GTAC | 1 cut(s) | 210 |
| DdeI | CTNAG | 6 cut(s) | 175, 243, 460, 585, 601, 738 |
| DpnI | GATC | 7 cut(s) | 73, 82, 138, 154, 276, 566, 750 |
| DpnII | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| Eam1104I | CTCTTC | 1 cut(s) | 15 |
| EarI | CTCTTC | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 2 cut(s) | 14, 148 |
| EcoRI | GAATTC | 1 cut(s) | 670 |
| EcoRII | CCWGG | 1 cut(s) | 555 |
| EcoT14I | CCWWGG | 2 cut(s) | 14, 148 |
| ErhI | CCWWGG | 2 cut(s) | 14, 148 |
| FaeI | CATG | 3 cut(s) | 18, 281, 512 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 578, 610 |
| FatI | CATG | 3 cut(s) | 14, 277, 508 |
| FbaI | TGATCA | 1 cut(s) | 274 |
| FblI | GTMKAC | 2 cut(s) | 353, 692 |
| Fnu4HI | GCNGC | 3 cut(s) | 404, 407, 618 |
| FokI | GGATG | 4 cut(s) | 461, 466, 557, 633 |
| Fsp4HI | GCNGC | 3 cut(s) | 404, 407, 618 |
| FspBI | CTAG | 4 cut(s) | 140, 264, 300, 429 |
| FspI | TGCGCA | 1 cut(s) | 687 |
| GlaI | GCGC | 2 cut(s) | 687, 717 |
| GluI | GCNGC | 3 cut(s) | 404, 407, 618 |
| HaeIII | GGCC | 1 cut(s) | 555 |
| HapII | CCGG | 1 cut(s) | 424 |
| HgaI | GACGC | 1 cut(s) | 239 |
| HhaI | GCGC | 2 cut(s) | 688, 718 |
| Hin1II | CATG | 3 cut(s) | 18, 281, 512 |
| Hin6I | GCGC | 2 cut(s) | 686, 716 |
| HinP1I | GCGC | 2 cut(s) | 686, 716 |
| HinfI | GANTC | 2 cut(s) | 269, 505 |
| HpaII | CCGG | 1 cut(s) | 424 |
| HphI | GGTGA | 4 cut(s) | 34, 68, 328, 718 |
| Hpy166II | GTNNAC | 3 cut(s) | 210, 354, 693 |
| Hpy188I | TCNGA | 6 cut(s) | 80, 85, 136, 274, 474, 604 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 568, 698 |
| Hpy8I | GTNNAC | 3 cut(s) | 210, 354, 693 |
| HpyAV | CCTTC | 1 cut(s) | 469 |
| HpyCH4III | ACNGT | 1 cut(s) | 614 |
| HpyCH4V | TGCA | 2 cut(s) | 364, 617 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 412 |
| HpyF3I | CTNAG | 6 cut(s) | 175, 243, 460, 585, 601, 738 |
| Hsp92II | CATG | 3 cut(s) | 18, 281, 512 |
| HspAI | GCGC | 2 cut(s) | 686, 716 |
| Ksp22I | TGATCA | 1 cut(s) | 274 |
| Kzo9I | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| LpnPI | CCDG | 7 cut(s) | 385, 419, 437, 452, 520, 542, 569 |
| Lsp1109I | GCAGC | 3 cut(s) | 415, 418, 629 |
| LweI | GCATC | 1 cut(s) | 488 |
| MaeI | CTAG | 4 cut(s) | 140, 264, 300, 429 |
| MaeIII | GTNAC | 5 cut(s) | 178, 266, 291, 334, 568 |
| MalI | GATC | 7 cut(s) | 73, 82, 138, 154, 276, 566, 750 |
| MboI | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| MboII | GAAGA | 2 cut(s) | 248, 449 |
| MflI | RGATCY | 1 cut(s) | 136 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MluCI | AATT | 4 cut(s) | 440, 499, 670, 677 |
| MluI | ACGCGT | 1 cut(s) | 356 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MnlI | CCTC | 8 cut(s) | 90, 103, 270, 535, 610, 694, 697, 774 |
| MroXI | GAANNNNTTC | 1 cut(s) | 468 |
| MseI | TTAA | 3 cut(s) | 36, 443, 636 |
| MslI | CAYNNNNRTG | 5 cut(s) | 92, 220, 323, 587, 651 |
| MspA1I | CMGCKG | 1 cut(s) | 54 |
| MspCI | CTTAAG | 1 cut(s) | 635 |
| MspI | CCGG | 1 cut(s) | 424 |
| MspR9I | CCNGG | 2 cut(s) | 425, 557 |
| Mva1269I | GAATGC | 1 cut(s) | 765 |
| MvaI | CCWGG | 1 cut(s) | 557 |
| MvnI | CGCG | 1 cut(s) | 358 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 412 |
| NciI | CCSGG | 1 cut(s) | 425 |
| NcoI | CCATGG | 1 cut(s) | 14 |
| NdeII | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| NlaIII | CATG | 3 cut(s) | 18, 281, 512 |
| NlaIV | GGNNCC | 2 cut(s) | 146, 309 |
| NmuCI | GTSAC | 3 cut(s) | 266, 334, 568 |
| NsbI | TGCGCA | 1 cut(s) | 687 |
| PctI | GAATGC | 1 cut(s) | 765 |
| PdmI | GAANNNNTTC | 1 cut(s) | 468 |
| PfeI | GAWTC | 1 cut(s) | 505 |
| PkrI | GCNGC | 3 cut(s) | 405, 408, 619 |
| PleI | GAGTC | 1 cut(s) | 263 |
| PpsI | GAGTC | 1 cut(s) | 263 |
| PshBI | ATTAAT | 1 cut(s) | 443 |
| Psp6I | CCWGG | 1 cut(s) | 555 |
| PspGI | CCWGG | 1 cut(s) | 555 |
| PspN4I | GGNNCC | 2 cut(s) | 146, 309 |
| PsuI | RGATCY | 1 cut(s) | 136 |
| RsaI | GTAC | 1 cut(s) | 211 |
| RsaNI | GTAC | 1 cut(s) | 210 |
| RseI | CAYNNNNRTG | 5 cut(s) | 92, 220, 323, 587, 651 |
| SaqAI | TTAA | 3 cut(s) | 36, 443, 636 |
| SatI | GCNGC | 3 cut(s) | 404, 407, 618 |
| Sau3AI | GATC | 7 cut(s) | 71, 80, 136, 152, 274, 564, 748 |
| SchI | GAGTC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 2 cut(s) | 425, 557 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SetI | ASST | 6 cut(s) | 121, 189, 301, 325, 369, 708 |
| SfaNI | GCATC | 1 cut(s) | 488 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 92, 220, 323, 587, 651 |
| SmlI | CTYRAG | 2 cut(s) | 635, 696 |
| SmoI | CTYRAG | 2 cut(s) | 635, 696 |
| Sse9I | AATT | 4 cut(s) | 440, 499, 670, 677 |
| SsiI | CCGC | 2 cut(s) | 54, 305 |
| SspMI | CTAG | 4 cut(s) | 140, 264, 300, 429 |
| StyD4I | CCNGG | 2 cut(s) | 423, 555 |
| StyI | CCWWGG | 2 cut(s) | 14, 148 |
| TaaI | ACNGT | 1 cut(s) | 614 |
| TasI | AATT | 4 cut(s) | 440, 499, 670, 677 |
| TfiI | GAWTC | 1 cut(s) | 505 |
| Tru1I | TTAA | 3 cut(s) | 36, 443, 636 |
| Tru9I | TTAA | 3 cut(s) | 36, 443, 636 |
| TscAI | CASTG | 3 cut(s) | 210, 619, 627 |
| TseFI | GTSAC | 3 cut(s) | 266, 334, 568 |
| TseI | GCWGC | 3 cut(s) | 403, 406, 617 |
| Tsp45I | GTSAC | 3 cut(s) | 266, 334, 568 |
| TspDTI | ATGAA | 5 cut(s) | 54, 497, 537, 635, 683 |
| TspRI | CASTG | 3 cut(s) | 210, 619, 627 |
| Vha464I | CTTAAG | 1 cut(s) | 635 |
| VspI | ATTAAT | 1 cut(s) | 443 |
| XapI | RAATTY | 2 cut(s) | 499, 670 |
| XmiI | GTMKAC | 2 cut(s) | 353, 692 |
| XmnI | GAANNNNTTC | 1 cut(s) | 468 |
| XspI | CTAG | 4 cut(s) | 140, 264, 300, 429 |