ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 321 |
| AccB1I | GGYRCC | 1 cut(s) | 59 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 75 |
| AccBSI | CCGCTC | 1 cut(s) | 110 |
| AciI | CCGC | 3 cut(s) | 110, 167, 244 |
| AcoI | YGGCCR | 1 cut(s) | 66 |
| AcuI | CTGAAG | 1 cut(s) | 221 |
| AcyI | GRCGYC | 2 cut(s) | 60, 318 |
| AdeI | CACNNNGTG | 1 cut(s) | 75 |
| AfaI | GTAC | 2 cut(s) | 189, 462 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 75, 172 |
| AgsI | TTSAA | 2 cut(s) | 250, 281 |
| AluBI | AGCT | 1 cut(s) | 376 |
| AluI | AGCT | 1 cut(s) | 376 |
| Alw21I | GWGCWC | 1 cut(s) | 331 |
| Alw26I | GTCTC | 1 cut(s) | 80 |
| AoxI | GGCC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 1 cut(s) | 373 |
| AspLEI | GCGC | 1 cut(s) | 62 |
| AsuHPI | GGTGA | 1 cut(s) | 307 |
| AsuNHI | GCTAGC | 1 cut(s) | 206 |
| BalI | TGGCCA | 1 cut(s) | 68 |
| BanI | GGYRCC | 1 cut(s) | 59 |
| Bbv12I | GWGCWC | 1 cut(s) | 331 |
| BbvI | GCAGC | 1 cut(s) | 385 |
| BccI | CCATC | 2 cut(s) | 130, 281 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 96, 130 |
| BcoDI | GTCTC | 1 cut(s) | 80 |
| BfaI | CTAG | 3 cut(s) | 101, 207, 438 |
| BfoI | RGCGCY | 1 cut(s) | 63 |
| BisI | GCNGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 1 cut(s) | 375 |
| BmiI | GGNNCC | 1 cut(s) | 61 |
| BmtI | GCTAGC | 1 cut(s) | 210 |
| BoxI | GACNNNNGTC | 1 cut(s) | 317 |
| BpmI | CTGGAG | 2 cut(s) | 345, 464 |
| BsaHI | GRCGYC | 2 cut(s) | 60, 318 |
| BsaJI | CCNNGG | 2 cut(s) | 55, 63 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 180, 210 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 75, 172 |
| Bse1I | ACTGG | 1 cut(s) | 447 |
| BseDI | CCNNGG | 2 cut(s) | 55, 63 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 75, 172 |
| BseNI | ACTGG | 1 cut(s) | 447 |
| BseXI | GCAGC | 1 cut(s) | 385 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| BshFI | GGCC | 1 cut(s) | 68 |
| BshNI | GGYRCC | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 1 cut(s) | 331 |
| BslFI | GGGAC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 75, 172 |
| BsmAI | GTCTC | 1 cut(s) | 80 |
| BsmFI | GGGAC | 1 cut(s) | 325 |
| BsmI | GAATGC | 1 cut(s) | 287 |
| BsnI | GGCC | 1 cut(s) | 68 |
| Bsp1286I | GDGCHC | 1 cut(s) | 331 |
| Bsp143I | GATC | 1 cut(s) | 103 |
| Bsp19I | CCATGG | 2 cut(s) | 55, 63 |
| BspACI | CCGC | 3 cut(s) | 110, 167, 244 |
| BspANI | GGCC | 1 cut(s) | 68 |
| BspLI | GGNNCC | 1 cut(s) | 61 |
| BspOI | GCTAGC | 1 cut(s) | 210 |
| BspT107I | GGYRCC | 1 cut(s) | 59 |
| BsrBI | CCGCTC | 1 cut(s) | 110 |
| BsrI | ACTGG | 1 cut(s) | 447 |
| BssECI | CCNNGG | 2 cut(s) | 55, 63 |
| BssMI | GATC | 1 cut(s) | 103 |
| BssNI | GRCGYC | 2 cut(s) | 60, 318 |
| BssT1I | CCWWGG | 2 cut(s) | 55, 63 |
| BstACI | GRCGYC | 2 cut(s) | 60, 318 |
| BstC8I | GCNNGC | 1 cut(s) | 208 |
| BstDEI | CTNAG | 1 cut(s) | 46 |
| BstDSI | CCRYGG | 2 cut(s) | 55, 63 |
| BstH2I | RGCGCY | 1 cut(s) | 63 |
| BstHHI | GCGC | 1 cut(s) | 62 |
| BstKTI | GATC | 1 cut(s) | 106 |
| BstMAI | GTCTC | 1 cut(s) | 80 |
| BstMBI | GATC | 1 cut(s) | 103 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 212, 235 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 317 |
| BstV1I | GCAGC | 1 cut(s) | 385 |
| BsuRI | GGCC | 1 cut(s) | 68 |
| BtgI | CCRYGG | 2 cut(s) | 55, 63 |
| BtgZI | GCGATG | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 1 cut(s) | 208 |
| CfoI | GCGC | 1 cut(s) | 62 |
| CseI | GACGC | 1 cut(s) | 86 |
| Csp6I | GTAC | 2 cut(s) | 188, 461 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 453 |
| CviAII | CATG | 3 cut(s) | 56, 64, 185 |
| CviJI | RGCY | 8 cut(s) | 9, 20, 27, 68, 206, 215, 305, 376 |
| CviKI_1 | RGCY | 8 cut(s) | 9, 20, 27, 68, 206, 215, 305, 376 |
| CviQI | GTAC | 2 cut(s) | 188, 461 |
| DdeI | CTNAG | 1 cut(s) | 46 |
| DinI | GGCGCC | 1 cut(s) | 61 |
| DpnI | GATC | 1 cut(s) | 105 |
| DpnII | GATC | 1 cut(s) | 103 |
| DraIII | CACNNNGTG | 1 cut(s) | 75 |
| EaeI | YGGCCR | 1 cut(s) | 66 |
| Eco130I | CCWWGG | 2 cut(s) | 55, 63 |
| Eco57I | CTGAAG | 1 cut(s) | 221 |
| EcoT14I | CCWWGG | 2 cut(s) | 55, 63 |
| EgeI | GGCGCC | 1 cut(s) | 61 |
| EheI | GGCGCC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 2 cut(s) | 55, 63 |
| FaeI | CATG | 3 cut(s) | 59, 67, 188 |
| FaiI | YATR | 6 cut(s) | 57, 65, 84, 186, 335, 363 |
| FaqI | GGGAC | 1 cut(s) | 325 |
| FatI | CATG | 3 cut(s) | 55, 63, 184 |
| FauI | CCCGC | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 1 cut(s) | 374 |
| Fsp4HI | GCNGC | 1 cut(s) | 374 |
| FspBI | CTAG | 3 cut(s) | 101, 207, 438 |
| GlaI | GCGC | 1 cut(s) | 61 |
| GluI | GCNGC | 1 cut(s) | 374 |
| GsuI | CTGGAG | 2 cut(s) | 345, 464 |
| HaeII | RGCGCY | 1 cut(s) | 63 |
| HaeIII | GGCC | 1 cut(s) | 68 |
| HgaI | GACGC | 1 cut(s) | 86 |
| HhaI | GCGC | 1 cut(s) | 62 |
| Hin1I | GRCGYC | 2 cut(s) | 60, 318 |
| Hin1II | CATG | 3 cut(s) | 59, 67, 188 |
| Hin6I | GCGC | 1 cut(s) | 60 |
| HinP1I | GCGC | 1 cut(s) | 60 |
| HinfI | GANTC | 3 cut(s) | 51, 176, 430 |
| HphI | GGTGA | 1 cut(s) | 307 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 181 |
| Hpy188III | TCNNGA | 4 cut(s) | 101, 199, 278, 438 |
| Hpy99I | CGWCG | 1 cut(s) | 323 |
| HpyAV | CCTTC | 2 cut(s) | 180, 196 |
| HpyCH4IV | ACGT | 1 cut(s) | 318 |
| HpyCH4V | TGCA | 6 cut(s) | 117, 271, 359, 373, 388, 418 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 212, 235 |
| HpyF3I | CTNAG | 1 cut(s) | 46 |
| HpySE526I | ACGT | 1 cut(s) | 318 |
| Hsp92I | GRCGYC | 2 cut(s) | 60, 318 |
| Hsp92II | CATG | 3 cut(s) | 59, 67, 188 |
| HspAI | GCGC | 1 cut(s) | 60 |
| KasI | GGCGCC | 1 cut(s) | 59 |
| Kzo9I | GATC | 1 cut(s) | 103 |
| LmnI | GCTCC | 2 cut(s) | 201, 326 |
| LpnPI | CCDG | 5 cut(s) | 206, 212, 250, 309, 428 |
| Lsp1109I | GCAGC | 1 cut(s) | 385 |
| MaeI | CTAG | 3 cut(s) | 101, 207, 438 |
| MaeII | ACGT | 1 cut(s) | 318 |
| MaeIII | GTNAC | 1 cut(s) | 343 |
| MalI | GATC | 1 cut(s) | 105 |
| MbiI | CCGCTC | 1 cut(s) | 110 |
| MboI | GATC | 1 cut(s) | 103 |
| MboII | GAAGA | 2 cut(s) | 361, 364 |
| MfeI | CAATTG | 1 cut(s) | 413 |
| MhlI | GDGCHC | 1 cut(s) | 331 |
| MlsI | TGGCCA | 1 cut(s) | 68 |
| MluCI | AATT | 3 cut(s) | 79, 413, 465 |
| MluNI | TGGCCA | 1 cut(s) | 68 |
| Mly113I | GGCGCC | 1 cut(s) | 60 |
| MmeI | TCCRAC | 2 cut(s) | 21, 204 |
| MnlI | CCTC | 8 cut(s) | 10, 201, 228, 250, 295, 398, 419, 439 |
| Mox20I | TGGCCA | 1 cut(s) | 68 |
| MscI | TGGCCA | 1 cut(s) | 68 |
| Msp20I | TGGCCA | 1 cut(s) | 68 |
| MunI | CAATTG | 1 cut(s) | 413 |
| Mva1269I | GAATGC | 1 cut(s) | 287 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 212, 235 |
| NarI | GGCGCC | 1 cut(s) | 60 |
| NcoI | CCATGG | 2 cut(s) | 55, 63 |
| NdeII | GATC | 1 cut(s) | 103 |
| NheI | GCTAGC | 1 cut(s) | 206 |
| NlaIII | CATG | 3 cut(s) | 59, 67, 188 |
| NlaIV | GGNNCC | 1 cut(s) | 61 |
| NmuCI | GTSAC | 1 cut(s) | 343 |
| PctI | GAATGC | 1 cut(s) | 287 |
| PfeI | GAWTC | 3 cut(s) | 51, 176, 430 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 75 |
| PkrI | GCNGC | 1 cut(s) | 375 |
| PluTI | GGCGCC | 1 cut(s) | 63 |
| PshAI | GACNNNNGTC | 1 cut(s) | 317 |
| PspN4I | GGNNCC | 1 cut(s) | 61 |
| RsaI | GTAC | 2 cut(s) | 189, 462 |
| RsaNI | GTAC | 2 cut(s) | 188, 461 |
| SatI | GCNGC | 1 cut(s) | 374 |
| Sau3AI | GATC | 1 cut(s) | 103 |
| SduI | GDGCHC | 1 cut(s) | 331 |
| SetI | ASST | 5 cut(s) | 193, 321, 334, 378, 386 |
| SfoI | GGCGCC | 1 cut(s) | 61 |
| Sse9I | AATT | 3 cut(s) | 79, 413, 465 |
| SsiI | CCGC | 3 cut(s) | 110, 167, 244 |
| SspDI | GGCGCC | 1 cut(s) | 59 |
| SspMI | CTAG | 3 cut(s) | 101, 207, 438 |
| StyI | CCWWGG | 2 cut(s) | 55, 63 |
| TaiI | ACGT | 1 cut(s) | 321 |
| TaqI | TCGA | 1 cut(s) | 106 |
| TaqII | GACCGA | 1 cut(s) | 423 |
| TasI | AATT | 3 cut(s) | 79, 413, 465 |
| TfiI | GAWTC | 3 cut(s) | 51, 176, 430 |
| TseFI | GTSAC | 1 cut(s) | 343 |
| TseI | GCWGC | 1 cut(s) | 373 |
| Tsp45I | GTSAC | 1 cut(s) | 343 |
| TspDTI | ATGAA | 1 cut(s) | 149 |
| TspGWI | ACGGA | 1 cut(s) | 329 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 75 |
| XbaI | TCTAGA | 2 cut(s) | 100, 437 |
| XspI | CTAG | 3 cut(s) | 101, 207, 438 |
| ZraI | GACGTC | 1 cut(s) | 319 |