ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 386 |
| AclWI | GGATC | 1 cut(s) | 880 |
| AfaI | GTAC | 1 cut(s) | 600 |
| AgsI | TTSAA | 3 cut(s) | 61, 274, 536 |
| AjnI | CCWGG | 4 cut(s) | 14, 191, 358, 428 |
| AluBI | AGCT | 8 cut(s) | 56, 154, 176, 378, 587, 679, 744, 900 |
| AluI | AGCT | 8 cut(s) | 56, 154, 176, 378, 587, 679, 744, 900 |
| Alw21I | GWGCWC | 2 cut(s) | 746, 760 |
| Alw26I | GTCTC | 6 cut(s) | 101, 121, 139, 303, 522, 693 |
| AlwI | GGATC | 1 cut(s) | 880 |
| Ama87I | CYCGRG | 1 cut(s) | 453 |
| AoxI | GGCC | 1 cut(s) | 194 |
| AspLEI | GCGC | 2 cut(s) | 387, 396 |
| AspS9I | GGNCC | 1 cut(s) | 356 |
| AsuC2I | CCSGG | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 2 cut(s) | 64, 494 |
| AvaI | CYCGRG | 1 cut(s) | 453 |
| AvaII | GGWCC | 1 cut(s) | 356 |
| BanII | GRGCYC | 1 cut(s) | 746 |
| Bbv12I | GWGCWC | 2 cut(s) | 746, 760 |
| BccI | CCATC | 6 cut(s) | 94, 217, 283, 427, 454, 821 |
| BceAI | ACGGC | 3 cut(s) | 438, 610, 783 |
| BciT130I | CCWGG | 4 cut(s) | 16, 193, 360, 430 |
| BciVI | GTATCC | 2 cut(s) | 813, 856 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BcnI | CCSGG | 1 cut(s) | 297 |
| BcoDI | GTCTC | 6 cut(s) | 101, 121, 139, 303, 522, 693 |
| BfaI | CTAG | 3 cut(s) | 149, 155, 524 |
| BfmI | CTRYAG | 1 cut(s) | 702 |
| BfuI | GTATCC | 2 cut(s) | 813, 856 |
| Bme1390I | CCNGG | 5 cut(s) | 16, 193, 297, 360, 430 |
| Bme18I | GGWCC | 1 cut(s) | 356 |
| BmeT110I | CYCGRG | 1 cut(s) | 453 |
| BmgT120I | GGNCC | 1 cut(s) | 356 |
| BmiI | GGNNCC | 3 cut(s) | 294, 357, 632 |
| BmrFI | CCNGG | 5 cut(s) | 16, 193, 297, 360, 430 |
| BmsI | GCATC | 4 cut(s) | 39, 264, 434, 868 |
| BoxI | GACNNNNGTC | 1 cut(s) | 113 |
| BpuMI | CCSGG | 1 cut(s) | 297 |
| BsaI | GGTCTC | 2 cut(s) | 121, 522 |
| BsaJI | CCNNGG | 3 cut(s) | 400, 626, 810 |
| BsaWI | WCCGGW | 1 cut(s) | 823 |
| Bse1I | ACTGG | 1 cut(s) | 717 |
| BseBI | CCWGG | 4 cut(s) | 16, 193, 360, 430 |
| BseDI | CCNNGG | 3 cut(s) | 400, 626, 810 |
| BseGI | GGATG | 3 cut(s) | 425, 438, 832 |
| BseMII | CTCAG | 1 cut(s) | 134 |
| BseNI | ACTGG | 1 cut(s) | 717 |
| BshFI | GGCC | 1 cut(s) | 196 |
| BsiHKAI | GWGCWC | 2 cut(s) | 746, 760 |
| BsiHKCI | CYCGRG | 1 cut(s) | 453 |
| BsiSI | CCGG | 2 cut(s) | 296, 824 |
| BslFI | GGGAC | 2 cut(s) | 369, 433 |
| BsmAI | GTCTC | 6 cut(s) | 101, 121, 139, 303, 522, 693 |
| BsmFI | GGGAC | 2 cut(s) | 369, 433 |
| BsnI | GGCC | 1 cut(s) | 196 |
| Bso31I | GGTCTC | 2 cut(s) | 121, 522 |
| BsoBI | CYCGRG | 1 cut(s) | 453 |
| Bsp1286I | GDGCHC | 2 cut(s) | 746, 760 |
| Bsp143I | GATC | 2 cut(s) | 69, 872 |
| Bsp19I | CCATGG | 1 cut(s) | 400 |
| BspANI | GGCC | 1 cut(s) | 196 |
| BspCNI | CTCAG | 1 cut(s) | 135 |
| BspLI | GGNNCC | 3 cut(s) | 294, 357, 632 |
| BspPI | GGATC | 1 cut(s) | 880 |
| BspTNI | GGTCTC | 2 cut(s) | 121, 522 |
| BsrI | ACTGG | 1 cut(s) | 717 |
| BssECI | CCNNGG | 3 cut(s) | 400, 626, 810 |
| BssMI | GATC | 2 cut(s) | 69, 872 |
| BssT1I | CCWWGG | 2 cut(s) | 400, 810 |
| Bst2UI | CCWGG | 4 cut(s) | 16, 193, 360, 430 |
| Bst4CI | ACNGT | 2 cut(s) | 170, 532 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstDEI | CTNAG | 1 cut(s) | 143 |
| BstDSI | CCRYGG | 2 cut(s) | 400, 626 |
| BstEII | GGTNACC | 1 cut(s) | 482 |
| BstF5I | GGATG | 3 cut(s) | 425, 438, 832 |
| BstHHI | GCGC | 2 cut(s) | 387, 396 |
| BstKTI | GATC | 2 cut(s) | 72, 875 |
| BstMAI | GTCTC | 6 cut(s) | 101, 121, 139, 303, 522, 693 |
| BstMBI | GATC | 2 cut(s) | 69, 872 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 384, 391, 393, 887 |
| BstNI | CCWGG | 4 cut(s) | 16, 193, 360, 430 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 113 |
| BstPI | GGTNACC | 1 cut(s) | 482 |
| BstSCI | CCNGG | 5 cut(s) | 14, 191, 295, 358, 428 |
| BstSFI | CTRYAG | 1 cut(s) | 702 |
| BstX2I | RGATCY | 1 cut(s) | 872 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 872 |
| BsuI | GTATCC | 2 cut(s) | 813, 856 |
| BsuRI | GGCC | 1 cut(s) | 196 |
| BtgI | CCRYGG | 2 cut(s) | 400, 626 |
| BtsCI | GGATG | 3 cut(s) | 425, 438, 832 |
| BtsI | GCAGTG | 1 cut(s) | 420 |
| BtsIMutI | CAGTG | 3 cut(s) | 420, 528, 710 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CfoI | GCGC | 2 cut(s) | 387, 396 |
| Cfr13I | GGNCC | 1 cut(s) | 356 |
| CseI | GACGC | 2 cut(s) | 337, 372 |
| Csp6I | GTAC | 1 cut(s) | 599 |
| CviAII | CATG | 6 cut(s) | 133, 401, 479, 488, 581, 748 |
| CviQI | GTAC | 1 cut(s) | 599 |
| DdeI | CTNAG | 1 cut(s) | 143 |
| DpnI | GATC | 2 cut(s) | 71, 874 |
| DpnII | GATC | 2 cut(s) | 69, 872 |
| Ecl136II | GAGCTC | 1 cut(s) | 744 |
| Eco130I | CCWWGG | 2 cut(s) | 400, 810 |
| Eco147I | AGGCCT | 1 cut(s) | 196 |
| Eco24I | GRGCYC | 1 cut(s) | 746 |
| Eco31I | GGTCTC | 2 cut(s) | 121, 522 |
| Eco47I | GGWCC | 1 cut(s) | 356 |
| Eco53kI | GAGCTC | 1 cut(s) | 744 |
| Eco88I | CYCGRG | 1 cut(s) | 453 |
| Eco91I | GGTNACC | 1 cut(s) | 482 |
| EcoICRI | GAGCTC | 1 cut(s) | 744 |
| EcoO109I | RGGNCCY | 1 cut(s) | 356 |
| EcoO65I | GGTNACC | 1 cut(s) | 482 |
| EcoRII | CCWGG | 4 cut(s) | 14, 191, 358, 428 |
| EcoT14I | CCWWGG | 2 cut(s) | 400, 810 |
| EcoT22I | ATGCAT | 1 cut(s) | 669 |
| EcoT38I | GRGCYC | 1 cut(s) | 746 |
| ErhI | CCWWGG | 2 cut(s) | 400, 810 |
| FaeI | CATG | 6 cut(s) | 136, 404, 482, 491, 584, 751 |
| FaqI | GGGAC | 2 cut(s) | 369, 433 |
| FatI | CATG | 6 cut(s) | 132, 400, 478, 487, 580, 747 |
| FauNDI | CATATG | 2 cut(s) | 693, 798 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| FokI | GGATG | 3 cut(s) | 412, 445, 839 |
| FriOI | GRGCYC | 1 cut(s) | 746 |
| FspBI | CTAG | 3 cut(s) | 149, 155, 524 |
| FspI | TGCGCA | 1 cut(s) | 386 |
| GlaI | GCGC | 2 cut(s) | 386, 395 |
| HaeIII | GGCC | 1 cut(s) | 196 |
| HapII | CCGG | 2 cut(s) | 296, 824 |
| HgaI | GACGC | 2 cut(s) | 337, 372 |
| HhaI | GCGC | 2 cut(s) | 387, 396 |
| Hin1II | CATG | 6 cut(s) | 136, 404, 482, 491, 584, 751 |
| Hin6I | GCGC | 2 cut(s) | 385, 394 |
| HinP1I | GCGC | 2 cut(s) | 385, 394 |
| HindIII | AAGCTT | 2 cut(s) | 54, 585 |
| HinfI | GANTC | 3 cut(s) | 30, 41, 122 |
| HpaII | CCGG | 2 cut(s) | 296, 824 |
| HphI | GGTGA | 2 cut(s) | 64, 494 |
| Hpy166II | GTNNAC | 1 cut(s) | 548 |
| Hpy188I | TCNGA | 8 cut(s) | 121, 127, 144, 245, 657, 736, 877, 897 |
| Hpy188III | TCNNGA | 1 cut(s) | 373 |
| Hpy8I | GTNNAC | 1 cut(s) | 548 |
| Hpy99I | CGWCG | 1 cut(s) | 543 |
| HpyAV | CCTTC | 1 cut(s) | 379 |
| HpyCH4III | ACNGT | 2 cut(s) | 170, 532 |
| HpyCH4IV | ACGT | 1 cut(s) | 538 |
| HpyCH4V | TGCA | 5 cut(s) | 52, 208, 667, 697, 890 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 384, 391, 393, 887 |
| HpyF3I | CTNAG | 1 cut(s) | 143 |
| HpySE526I | ACGT | 1 cut(s) | 538 |
| Hsp92II | CATG | 6 cut(s) | 136, 404, 482, 491, 584, 751 |
| HspAI | GCGC | 2 cut(s) | 385, 394 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| Kzo9I | GATC | 2 cut(s) | 69, 872 |
| LmnI | GCTCC | 3 cut(s) | 371, 749, 763 |
| LweI | GCATC | 4 cut(s) | 39, 264, 434, 868 |
| MaeI | CTAG | 3 cut(s) | 149, 155, 524 |
| MaeII | ACGT | 1 cut(s) | 538 |
| MaeIII | GTNAC | 4 cut(s) | 349, 457, 482, 727 |
| MalI | GATC | 2 cut(s) | 71, 874 |
| MboI | GATC | 2 cut(s) | 69, 872 |
| MboII | GAAGA | 2 cut(s) | 490, 670 |
| MfeI | CAATTG | 1 cut(s) | 65 |
| MflI | RGATCY | 1 cut(s) | 872 |
| MhlI | GDGCHC | 2 cut(s) | 746, 760 |
| MluCI | AATT | 4 cut(s) | 19, 65, 227, 777 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MnlI | CCTC | 2 cut(s) | 589, 846 |
| Mph1103I | ATGCAT | 1 cut(s) | 669 |
| MseI | TTAA | 1 cut(s) | 101 |
| MslI | CAYNNNNRTG | 2 cut(s) | 266, 672 |
| MspI | CCGG | 2 cut(s) | 296, 824 |
| MspR9I | CCNGG | 5 cut(s) | 16, 193, 297, 360, 430 |
| MunI | CAATTG | 1 cut(s) | 65 |
| MvaI | CCWGG | 4 cut(s) | 16, 193, 360, 430 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 384, 391, 393, 887 |
| NciI | CCSGG | 1 cut(s) | 297 |
| NcoI | CCATGG | 1 cut(s) | 400 |
| NdeI | CATATG | 2 cut(s) | 693, 798 |
| NdeII | GATC | 2 cut(s) | 69, 872 |
| NlaIII | CATG | 6 cut(s) | 136, 404, 482, 491, 584, 751 |
| NlaIV | GGNNCC | 3 cut(s) | 294, 357, 632 |
| NmuCI | GTSAC | 3 cut(s) | 349, 482, 727 |
| NsbI | TGCGCA | 1 cut(s) | 386 |
| NsiI | ATGCAT | 1 cut(s) | 669 |
| PceI | AGGCCT | 1 cut(s) | 196 |
| PfeI | GAWTC | 2 cut(s) | 30, 122 |
| PfoI | TCCNGGA | 2 cut(s) | 295, 428 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| PpuMI | RGGWCCY | 1 cut(s) | 356 |
| PshAI | GACNNNNGTC | 1 cut(s) | 113 |
| Psp124BI | GAGCTC | 1 cut(s) | 746 |
| Psp5II | RGGWCCY | 1 cut(s) | 356 |
| Psp6I | CCWGG | 4 cut(s) | 14, 191, 358, 428 |
| PspEI | GGTNACC | 1 cut(s) | 482 |
| PspGI | CCWGG | 4 cut(s) | 14, 191, 358, 428 |
| PspN4I | GGNNCC | 3 cut(s) | 294, 357, 632 |
| PspPI | GGNCC | 1 cut(s) | 356 |
| PspPPI | RGGWCCY | 1 cut(s) | 356 |
| PsuI | RGATCY | 1 cut(s) | 872 |
| RsaI | GTAC | 1 cut(s) | 600 |
| RsaNI | GTAC | 1 cut(s) | 599 |
| RseI | CAYNNNNRTG | 2 cut(s) | 266, 672 |
| SacI | GAGCTC | 1 cut(s) | 746 |
| SaqAI | TTAA | 1 cut(s) | 101 |
| Sau3AI | GATC | 2 cut(s) | 69, 872 |
| Sau96I | GGNCC | 1 cut(s) | 356 |
| SchI | GAGTC | 1 cut(s) | 35 |
| ScrFI | CCNGG | 5 cut(s) | 16, 193, 297, 360, 430 |
| SduI | GDGCHC | 2 cut(s) | 746, 760 |
| SfaNI | GCATC | 4 cut(s) | 39, 264, 434, 868 |
| SfcI | CTRYAG | 1 cut(s) | 702 |
| SinI | GGWCC | 1 cut(s) | 356 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 266, 672 |
| Sse9I | AATT | 4 cut(s) | 19, 65, 227, 777 |
| SseBI | AGGCCT | 1 cut(s) | 196 |
| SspI | AATATT | 1 cut(s) | 857 |
| SspMI | CTAG | 3 cut(s) | 149, 155, 524 |
| SstI | GAGCTC | 1 cut(s) | 746 |
| StuI | AGGCCT | 1 cut(s) | 196 |
| StyD4I | CCNGG | 5 cut(s) | 14, 191, 295, 358, 428 |
| StyI | CCWWGG | 2 cut(s) | 400, 810 |
| TaaI | ACNGT | 2 cut(s) | 170, 532 |
| TaiI | ACGT | 1 cut(s) | 541 |
| TaqII | GACCGA | 1 cut(s) | 504 |
| TasI | AATT | 4 cut(s) | 19, 65, 227, 777 |
| TfiI | GAWTC | 2 cut(s) | 30, 122 |
| Tru1I | TTAA | 1 cut(s) | 101 |
| Tru9I | TTAA | 1 cut(s) | 101 |
| TscAI | CASTG | 3 cut(s) | 420, 535, 717 |
| TseFI | GTSAC | 3 cut(s) | 349, 482, 727 |
| Tsp45I | GTSAC | 3 cut(s) | 349, 482, 727 |
| TspDTI | ATGAA | 5 cut(s) | 17, 149, 467, 597, 785 |
| TspGWI | ACGGA | 1 cut(s) | 34 |
| TspRI | CASTG | 3 cut(s) | 420, 535, 717 |
| VpaK11BI | GGWCC | 1 cut(s) | 356 |
| XspI | CTAG | 3 cut(s) | 149, 155, 524 |
| Zsp2I | ATGCAT | 1 cut(s) | 669 |