ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 235 |
| AccI | GTMKAC | 1 cut(s) | 464 |
| AccII | CGCG | 2 cut(s) | 307, 340 |
| AciI | CCGC | 3 cut(s) | 288, 305, 347 |
| AclWI | GGATC | 1 cut(s) | 44 |
| AcsI | RAATTY | 2 cut(s) | 70, 475 |
| AfaI | GTAC | 1 cut(s) | 514 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 178, 364, 382, 522 |
| AgsI | TTSAA | 2 cut(s) | 67, 452 |
| AjnI | CCWGG | 2 cut(s) | 295, 467 |
| AluBI | AGCT | 1 cut(s) | 416 |
| AluI | AGCT | 1 cut(s) | 416 |
| AlwI | GGATC | 1 cut(s) | 44 |
| Ama87I | CYCGRG | 1 cut(s) | 546 |
| AoxI | GGCC | 3 cut(s) | 60, 292, 373 |
| ApeKI | GCWGC | 1 cut(s) | 553 |
| ApoI | RAATTY | 2 cut(s) | 70, 475 |
| AspLEI | GCGC | 3 cut(s) | 160, 315, 340 |
| AspS9I | GGNCC | 5 cut(s) | 60, 252, 293, 355, 374 |
| AvaI | CYCGRG | 1 cut(s) | 546 |
| AvaII | GGWCC | 2 cut(s) | 252, 355 |
| BbvI | GCAGC | 1 cut(s) | 565 |
| BccI | CCATC | 1 cut(s) | 365 |
| BceAI | ACGGC | 1 cut(s) | 360 |
| BciT130I | CCWGG | 2 cut(s) | 297, 469 |
| BfaI | CTAG | 2 cut(s) | 161, 351 |
| BfoI | RGCGCY | 2 cut(s) | 161, 316 |
| BfuAI | ACCTGC | 1 cut(s) | 235 |
| BglII | AGATCT | 1 cut(s) | 430 |
| BisI | GCNGC | 2 cut(s) | 348, 554 |
| BlsI | GCNGC | 2 cut(s) | 349, 555 |
| Bme1390I | CCNGG | 2 cut(s) | 297, 469 |
| Bme18I | GGWCC | 2 cut(s) | 252, 355 |
| BmeT110I | CYCGRG | 1 cut(s) | 546 |
| BmgT120I | GGNCC | 5 cut(s) | 60, 252, 293, 355, 374 |
| BmiI | GGNNCC | 2 cut(s) | 303, 356 |
| BmrFI | CCNGG | 2 cut(s) | 297, 469 |
| BmsI | GCATC | 2 cut(s) | 387, 565 |
| Bsa29I | ATCGAT | 1 cut(s) | 273 |
| BsaJI | CCNNGG | 2 cut(s) | 295, 296 |
| BsaWI | WCCGGW | 1 cut(s) | 320 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 178, 364, 382, 522 |
| Bse3DI | GCAATG | 1 cut(s) | 513 |
| BseBI | CCWGG | 2 cut(s) | 297, 469 |
| BseCI | ATCGAT | 1 cut(s) | 273 |
| BseDI | CCNNGG | 2 cut(s) | 295, 296 |
| BseGI | GGATG | 1 cut(s) | 376 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 178, 364, 382, 522 |
| BseMI | GCAATG | 1 cut(s) | 513 |
| BseXI | GCAGC | 1 cut(s) | 565 |
| BsgI | GTGCAG | 2 cut(s) | 263, 572 |
| Bsh1236I | CGCG | 2 cut(s) | 307, 340 |
| BshFI | GGCC | 3 cut(s) | 62, 294, 375 |
| BshVI | ATCGAT | 1 cut(s) | 273 |
| BsiHKCI | CYCGRG | 1 cut(s) | 546 |
| BsiSI | CCGG | 1 cut(s) | 321 |
| BslFI | GGGAC | 1 cut(s) | 368 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 178, 364, 382, 522 |
| BsmFI | GGGAC | 1 cut(s) | 368 |
| BsnI | GGCC | 3 cut(s) | 62, 294, 375 |
| BsoBI | CYCGRG | 1 cut(s) | 546 |
| Bsp143I | GATC | 4 cut(s) | 36, 145, 274, 430 |
| BspACI | CCGC | 3 cut(s) | 288, 305, 347 |
| BspANI | GGCC | 3 cut(s) | 62, 294, 375 |
| BspDI | ATCGAT | 1 cut(s) | 273 |
| BspFNI | CGCG | 2 cut(s) | 307, 340 |
| BspLI | GGNNCC | 2 cut(s) | 303, 356 |
| BspMI | ACCTGC | 1 cut(s) | 235 |
| BspPI | GGATC | 1 cut(s) | 44 |
| BsrDI | GCAATG | 1 cut(s) | 513 |
| BssECI | CCNNGG | 2 cut(s) | 295, 296 |
| BssMI | GATC | 4 cut(s) | 36, 145, 274, 430 |
| Bst2UI | CCWGG | 2 cut(s) | 297, 469 |
| Bst4CI | ACNGT | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 1 cut(s) | 213 |
| BstDEI | CTNAG | 2 cut(s) | 17, 491 |
| BstF5I | GGATG | 1 cut(s) | 376 |
| BstFNI | CGCG | 2 cut(s) | 307, 340 |
| BstH2I | RGCGCY | 2 cut(s) | 161, 316 |
| BstHHI | GCGC | 3 cut(s) | 160, 315, 340 |
| BstKTI | GATC | 4 cut(s) | 39, 148, 277, 433 |
| BstMBI | GATC | 4 cut(s) | 36, 145, 274, 430 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 344 |
| BstNI | CCWGG | 2 cut(s) | 297, 469 |
| BstSCI | CCNGG | 2 cut(s) | 295, 467 |
| BstUI | CGCG | 2 cut(s) | 307, 340 |
| BstV1I | GCAGC | 1 cut(s) | 565 |
| BstX2I | RGATCY | 2 cut(s) | 36, 430 |
| BstYI | RGATCY | 2 cut(s) | 36, 430 |
| Bsu15I | ATCGAT | 1 cut(s) | 273 |
| BsuRI | GGCC | 3 cut(s) | 62, 294, 375 |
| BsuTUI | ATCGAT | 1 cut(s) | 273 |
| BtsCI | GGATG | 1 cut(s) | 376 |
| BveI | ACCTGC | 1 cut(s) | 235 |
| Cac8I | GCNNGC | 1 cut(s) | 213 |
| CfoI | GCGC | 3 cut(s) | 160, 315, 340 |
| Cfr13I | GGNCC | 5 cut(s) | 60, 252, 293, 355, 374 |
| ClaI | ATCGAT | 1 cut(s) | 273 |
| CsiI | ACCWGGT | 1 cut(s) | 467 |
| Csp6I | GTAC | 1 cut(s) | 513 |
| CviAII | CATG | 3 cut(s) | 7, 542, 581 |
| CviJI | RGCY | 8 cut(s) | 62, 126, 211, 215, 294, 350, 375, 416 |
| CviKI_1 | RGCY | 8 cut(s) | 62, 126, 211, 215, 294, 350, 375, 416 |
| CviQI | GTAC | 1 cut(s) | 513 |
| DdeI | CTNAG | 2 cut(s) | 17, 491 |
| DpnI | GATC | 4 cut(s) | 38, 147, 276, 432 |
| DpnII | GATC | 4 cut(s) | 36, 145, 274, 430 |
| Eco47I | GGWCC | 2 cut(s) | 252, 355 |
| Eco88I | CYCGRG | 1 cut(s) | 546 |
| EcoO109I | RGGNCCY | 1 cut(s) | 60 |
| EcoRI | GAATTC | 1 cut(s) | 475 |
| EcoRII | CCWGG | 2 cut(s) | 295, 467 |
| FaeI | CATG | 3 cut(s) | 10, 545, 584 |
| FaiI | YATR | 9 cut(s) | 8, 14, 218, 330, 336, 426, 461, 543, 582 |
| FaqI | GGGAC | 1 cut(s) | 368 |
| FatI | CATG | 3 cut(s) | 6, 541, 580 |
| FblI | GTMKAC | 1 cut(s) | 464 |
| Fnu4HI | GCNGC | 2 cut(s) | 348, 554 |
| FokI | GGATG | 1 cut(s) | 383 |
| Fsp4HI | GCNGC | 2 cut(s) | 348, 554 |
| FspBI | CTAG | 2 cut(s) | 161, 351 |
| GlaI | GCGC | 3 cut(s) | 159, 314, 339 |
| GluI | GCNGC | 2 cut(s) | 348, 554 |
| HaeII | RGCGCY | 2 cut(s) | 161, 316 |
| HaeIII | GGCC | 3 cut(s) | 62, 294, 375 |
| HapII | CCGG | 1 cut(s) | 321 |
| HhaI | GCGC | 3 cut(s) | 160, 315, 340 |
| Hin1II | CATG | 3 cut(s) | 10, 545, 584 |
| Hin6I | GCGC | 3 cut(s) | 158, 313, 338 |
| HinP1I | GCGC | 3 cut(s) | 158, 313, 338 |
| HindIII | AAGCTT | 1 cut(s) | 414 |
| HinfI | GANTC | 3 cut(s) | 165, 324, 572 |
| HpaII | CCGG | 1 cut(s) | 321 |
| Hpy166II | GTNNAC | 2 cut(s) | 465, 513 |
| Hpy188I | TCNGA | 5 cut(s) | 229, 252, 481, 567, 577 |
| Hpy188III | TCNNGA | 3 cut(s) | 143, 278, 437 |
| Hpy8I | GTNNAC | 2 cut(s) | 465, 513 |
| HpyAV | CCTTC | 2 cut(s) | 265, 358 |
| HpyCH4III | ACNGT | 1 cut(s) | 359 |
| HpyCH4V | TGCA | 4 cut(s) | 42, 134, 244, 553 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 344 |
| HpyF3I | CTNAG | 2 cut(s) | 17, 491 |
| Hsp92II | CATG | 3 cut(s) | 10, 545, 584 |
| HspAI | GCGC | 3 cut(s) | 158, 313, 338 |
| Kzo9I | GATC | 4 cut(s) | 36, 145, 274, 430 |
| Lsp1109I | GCAGC | 1 cut(s) | 565 |
| LweI | GCATC | 2 cut(s) | 387, 565 |
| MabI | ACCWGGT | 1 cut(s) | 467 |
| MaeI | CTAG | 2 cut(s) | 161, 351 |
| MaeIII | GTNAC | 2 cut(s) | 112, 569 |
| MalI | GATC | 4 cut(s) | 38, 147, 276, 432 |
| MboI | GATC | 4 cut(s) | 36, 145, 274, 430 |
| MboII | GAAGA | 3 cut(s) | 79, 425, 551 |
| MfeI | CAATTG | 1 cut(s) | 152 |
| MflI | RGATCY | 2 cut(s) | 36, 430 |
| MluCI | AATT | 4 cut(s) | 25, 70, 152, 475 |
| MlyI | GAGTC | 1 cut(s) | 566 |
| MmeI | TCCRAC | 2 cut(s) | 207, 477 |
| MnlI | CCTC | 6 cut(s) | 26, 51, 175, 187, 395, 573 |
| MseI | TTAA | 1 cut(s) | 74 |
| MspI | CCGG | 1 cut(s) | 321 |
| MspR9I | CCNGG | 2 cut(s) | 297, 469 |
| MunI | CAATTG | 1 cut(s) | 152 |
| MvaI | CCWGG | 2 cut(s) | 297, 469 |
| MvnI | CGCG | 2 cut(s) | 307, 340 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 344 |
| NdeII | GATC | 4 cut(s) | 36, 145, 274, 430 |
| NlaIII | CATG | 3 cut(s) | 10, 545, 584 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 356 |
| NmuCI | GTSAC | 2 cut(s) | 112, 569 |
| PasI | CCCWGGG | 1 cut(s) | 296 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 397 |
| PfeI | GAWTC | 2 cut(s) | 165, 324 |
| PflFI | GACNNNGTC | 1 cut(s) | 233 |
| PkrI | GCNGC | 2 cut(s) | 349, 555 |
| PleI | GAGTC | 1 cut(s) | 566 |
| PpsI | GAGTC | 1 cut(s) | 566 |
| Psp6I | CCWGG | 2 cut(s) | 295, 467 |
| PspGI | CCWGG | 2 cut(s) | 295, 467 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 356 |
| PspPI | GGNCC | 5 cut(s) | 60, 252, 293, 355, 374 |
| PsuI | RGATCY | 2 cut(s) | 36, 430 |
| PsyI | GACNNNGTC | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 514 |
| RsaNI | GTAC | 1 cut(s) | 513 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| SatI | GCNGC | 2 cut(s) | 348, 554 |
| Sau3AI | GATC | 4 cut(s) | 36, 145, 274, 430 |
| Sau96I | GGNCC | 5 cut(s) | 60, 252, 293, 355, 374 |
| SchI | GAGTC | 1 cut(s) | 566 |
| ScrFI | CCNGG | 2 cut(s) | 297, 469 |
| SexAI | ACCWGGT | 1 cut(s) | 467 |
| SfaNI | GCATC | 2 cut(s) | 387, 565 |
| SinI | GGWCC | 2 cut(s) | 252, 355 |
| Sse9I | AATT | 4 cut(s) | 25, 70, 152, 475 |
| SsiI | CCGC | 3 cut(s) | 288, 305, 347 |
| SspMI | CTAG | 2 cut(s) | 161, 351 |
| StyD4I | CCNGG | 2 cut(s) | 295, 467 |
| TaaI | ACNGT | 1 cut(s) | 359 |
| TaqI | TCGA | 3 cut(s) | 88, 273, 528 |
| TasI | AATT | 4 cut(s) | 25, 70, 152, 475 |
| TauI | GCSGC | 1 cut(s) | 350 |
| TfiI | GAWTC | 2 cut(s) | 165, 324 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TseFI | GTSAC | 2 cut(s) | 112, 569 |
| TseI | GCWGC | 1 cut(s) | 553 |
| Tsp45I | GTSAC | 2 cut(s) | 112, 569 |
| TspGWI | ACGGA | 1 cut(s) | 398 |
| Tth111I | GACNNNGTC | 1 cut(s) | 233 |
| VpaK11BI | GGWCC | 2 cut(s) | 252, 355 |
| XapI | RAATTY | 2 cut(s) | 70, 475 |
| XmiI | GTMKAC | 1 cut(s) | 464 |
| XspI | CTAG | 2 cut(s) | 161, 351 |