ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 171 |
| AccI | GTMKAC | 1 cut(s) | 691 |
| AccII | CGCG | 1 cut(s) | 498 |
| AciI | CCGC | 2 cut(s) | 367, 580 |
| AclWI | GGATC | 5 cut(s) | 235, 296, 427, 534, 594 |
| AfaI | GTAC | 3 cut(s) | 253, 544, 777 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 57, 589, 609 |
| AgeI | ACCGGT | 1 cut(s) | 320 |
| AgsI | TTSAA | 3 cut(s) | 67, 142, 652 |
| AjnI | CCWGG | 2 cut(s) | 582, 685 |
| AluBI | AGCT | 3 cut(s) | 709, 756, 830 |
| AluI | AGCT | 3 cut(s) | 709, 756, 830 |
| Alw21I | GWGCWC | 3 cut(s) | 711, 819, 832 |
| Alw26I | GTCTC | 1 cut(s) | 173 |
| AlwI | GGATC | 5 cut(s) | 235, 296, 427, 534, 594 |
| Ama87I | CYCGRG | 1 cut(s) | 658 |
| ApeKI | GCWGC | 2 cut(s) | 370, 792 |
| AsiGI | ACCGGT | 1 cut(s) | 320 |
| AspLEI | GCGC | 2 cut(s) | 160, 172 |
| AspS9I | GGNCC | 1 cut(s) | 461 |
| AsuC2I | CCSGG | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 3 cut(s) | 292, 311, 424 |
| AvaI | CYCGRG | 1 cut(s) | 658 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BanII | GRGCYC | 2 cut(s) | 711, 832 |
| BauI | CACGAG | 1 cut(s) | 744 |
| Bbv12I | GWGCWC | 3 cut(s) | 711, 819, 832 |
| BbvI | GCAGC | 2 cut(s) | 357, 804 |
| BccI | CCATC | 3 cut(s) | 188, 241, 452 |
| BciT130I | CCWGG | 2 cut(s) | 584, 687 |
| BcnI | CCSGG | 1 cut(s) | 297 |
| BcoDI | GTCTC | 1 cut(s) | 173 |
| BfaI | CTAG | 5 cut(s) | 57, 161, 468, 506, 788 |
| BfoI | RGCGCY | 1 cut(s) | 161 |
| BisI | GCNGC | 3 cut(s) | 368, 371, 793 |
| BlsI | GCNGC | 3 cut(s) | 369, 372, 794 |
| Bme1390I | CCNGG | 3 cut(s) | 297, 584, 687 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmeT110I | CYCGRG | 1 cut(s) | 658 |
| BmgT120I | GGNCC | 1 cut(s) | 461 |
| BmrFI | CCNGG | 3 cut(s) | 297, 584, 687 |
| BmrI | ACTGGG | 1 cut(s) | 296 |
| BmsI | GCATC | 3 cut(s) | 474, 490, 557 |
| BmuI | ACTGGG | 1 cut(s) | 296 |
| BpmI | CTGGAG | 2 cut(s) | 225, 725 |
| BpuEI | CTTGAG | 1 cut(s) | 208 |
| BpuMI | CCSGG | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 1 cut(s) | 404 |
| BsaWI | WCCGGW | 1 cut(s) | 320 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 693, 723 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 57, 589, 609 |
| Bse118I | RCCGGY | 1 cut(s) | 320 |
| Bse1I | ACTGG | 2 cut(s) | 291, 708 |
| BseBI | CCWGG | 2 cut(s) | 584, 687 |
| BseDI | CCNNGG | 1 cut(s) | 404 |
| BseGI | GGATG | 1 cut(s) | 654 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 57, 589, 609 |
| BseMII | CTCAG | 1 cut(s) | 168 |
| BseNI | ACTGG | 2 cut(s) | 291, 708 |
| BseXI | GCAGC | 2 cut(s) | 357, 804 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| Bsh1236I | CGCG | 1 cut(s) | 498 |
| Bsh1285I | CGRYCG | 1 cut(s) | 348 |
| BshTI | ACCGGT | 1 cut(s) | 320 |
| BsiEI | CGRYCG | 1 cut(s) | 348 |
| BsiHKAI | GWGCWC | 3 cut(s) | 711, 819, 832 |
| BsiHKCI | CYCGRG | 1 cut(s) | 658 |
| BsiSI | CCGG | 3 cut(s) | 296, 321, 464 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 57, 589, 609 |
| BsmAI | GTCTC | 1 cut(s) | 173 |
| BsmI | GAATGC | 1 cut(s) | 568 |
| BsoBI | CYCGRG | 1 cut(s) | 658 |
| Bsp1286I | GDGCHC | 3 cut(s) | 711, 819, 832 |
| Bsp68I | TCGCGA | 1 cut(s) | 498 |
| BspACI | CCGC | 2 cut(s) | 367, 580 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspFNI | CGCG | 1 cut(s) | 498 |
| BspPI | GGATC | 5 cut(s) | 235, 296, 427, 534, 594 |
| BsrFI | RCCGGY | 1 cut(s) | 320 |
| BsrI | ACTGG | 2 cut(s) | 291, 708 |
| BssAI | RCCGGY | 1 cut(s) | 320 |
| BssECI | CCNNGG | 1 cut(s) | 404 |
| BssNAI | GTATAC | 1 cut(s) | 692 |
| BssSI | CACGAG | 1 cut(s) | 744 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst1107I | GTATAC | 1 cut(s) | 692 |
| Bst2BI | CACGAG | 1 cut(s) | 744 |
| Bst2UI | CCWGG | 2 cut(s) | 584, 687 |
| Bst4CI | ACNGT | 2 cut(s) | 184, 346 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 801 |
| BstC8I | GCNNGC | 1 cut(s) | 174 |
| BstDEI | CTNAG | 2 cut(s) | 177, 374 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 587 |
| BstF5I | GGATG | 1 cut(s) | 654 |
| BstFNI | CGCG | 1 cut(s) | 498 |
| BstH2I | RGCGCY | 1 cut(s) | 161 |
| BstHHI | GCGC | 2 cut(s) | 160, 172 |
| BstMAI | GTCTC | 1 cut(s) | 173 |
| BstMCI | CGRYCG | 1 cut(s) | 348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 157, 801 |
| BstNI | CCWGG | 2 cut(s) | 584, 687 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstSCI | CCNGG | 3 cut(s) | 295, 582, 685 |
| BstUI | CGCG | 1 cut(s) | 498 |
| BstV1I | GCAGC | 2 cut(s) | 357, 804 |
| BstX2I | RGATCY | 3 cut(s) | 240, 432, 526 |
| BstYI | RGATCY | 3 cut(s) | 240, 432, 526 |
| BstZ17I | GTATAC | 1 cut(s) | 692 |
| BtgZI | GCGATG | 1 cut(s) | 513 |
| BtsCI | GGATG | 1 cut(s) | 654 |
| BtsIMutI | CAGTG | 1 cut(s) | 701 |
| BtuMI | TCGCGA | 1 cut(s) | 498 |
| Cac8I | GCNNGC | 1 cut(s) | 174 |
| CfoI | GCGC | 2 cut(s) | 160, 172 |
| Cfr10I | RCCGGY | 1 cut(s) | 320 |
| Cfr13I | GGNCC | 1 cut(s) | 461 |
| Csp6I | GTAC | 3 cut(s) | 252, 543, 776 |
| CspAI | ACCGGT | 1 cut(s) | 320 |
| CviAII | CATG | 5 cut(s) | 7, 173, 271, 363, 833 |
| CviQI | GTAC | 3 cut(s) | 252, 543, 776 |
| DdeI | CTNAG | 2 cut(s) | 177, 374 |
| EciI | GGCGGA | 1 cut(s) | 569 |
| Ecl136II | GAGCTC | 2 cut(s) | 709, 830 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco24I | GRGCYC | 2 cut(s) | 711, 832 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco53kI | GAGCTC | 2 cut(s) | 709, 830 |
| Eco88I | CYCGRG | 1 cut(s) | 658 |
| EcoICRI | GAGCTC | 2 cut(s) | 709, 830 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 587 |
| EcoRII | CCWGG | 2 cut(s) | 582, 685 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| EcoT38I | GRGCYC | 2 cut(s) | 711, 832 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FaeI | CATG | 5 cut(s) | 10, 176, 274, 366, 836 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 763, 795 |
| FatI | CATG | 5 cut(s) | 6, 172, 270, 362, 832 |
| FblI | GTMKAC | 1 cut(s) | 691 |
| Fnu4HI | GCNGC | 3 cut(s) | 368, 371, 793 |
| FokI | GGATG | 1 cut(s) | 641 |
| FriOI | GRGCYC | 2 cut(s) | 711, 832 |
| Fsp4HI | GCNGC | 3 cut(s) | 368, 371, 793 |
| FspBI | CTAG | 5 cut(s) | 57, 161, 468, 506, 788 |
| FspI | TGCGCA | 1 cut(s) | 171 |
| GlaI | GCGC | 2 cut(s) | 159, 171 |
| GluI | GCNGC | 3 cut(s) | 368, 371, 793 |
| GsuI | CTGGAG | 2 cut(s) | 225, 725 |
| HaeII | RGCGCY | 1 cut(s) | 161 |
| HapII | CCGG | 3 cut(s) | 296, 321, 464 |
| HhaI | GCGC | 2 cut(s) | 160, 172 |
| Hin1II | CATG | 5 cut(s) | 10, 176, 274, 366, 836 |
| Hin6I | GCGC | 2 cut(s) | 158, 170 |
| HinP1I | GCGC | 2 cut(s) | 158, 170 |
| HinfI | GANTC | 3 cut(s) | 91, 395, 682 |
| HpaII | CCGG | 3 cut(s) | 296, 321, 464 |
| HphI | GGTGA | 3 cut(s) | 292, 311, 424 |
| Hpy166II | GTNNAC | 2 cut(s) | 692, 776 |
| Hpy188I | TCNGA | 2 cut(s) | 90, 388 |
| Hpy188III | TCNNGA | 8 cut(s) | 187, 204, 223, 244, 339, 392, 497, 658 |
| Hpy8I | GTNNAC | 2 cut(s) | 692, 776 |
| HpyCH4III | ACNGT | 2 cut(s) | 184, 346 |
| HpyCH4IV | ACGT | 3 cut(s) | 133, 352, 554 |
| HpyCH4V | TGCA | 8 cut(s) | 30, 151, 263, 503, 548, 566, 678, 727 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 157, 801 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 374 |
| HpySE526I | ACGT | 3 cut(s) | 133, 352, 554 |
| Hsp92II | CATG | 5 cut(s) | 10, 176, 274, 366, 836 |
| HspAI | GCGC | 2 cut(s) | 158, 170 |
| LmnI | GCTCC | 3 cut(s) | 706, 714, 753 |
| Lsp1109I | GCAGC | 2 cut(s) | 357, 804 |
| LweI | GCATC | 3 cut(s) | 474, 490, 557 |
| MaeI | CTAG | 5 cut(s) | 57, 161, 468, 506, 788 |
| MaeII | ACGT | 3 cut(s) | 133, 352, 554 |
| MaeIII | GTNAC | 3 cut(s) | 353, 614, 699 |
| MboII | GAAGA | 1 cut(s) | 250 |
| MflI | RGATCY | 3 cut(s) | 240, 432, 526 |
| MhlI | GDGCHC | 3 cut(s) | 711, 819, 832 |
| MluCI | AATT | 7 cut(s) | 15, 25, 307, 380, 421, 594, 734 |
| MlyI | GAGTC | 1 cut(s) | 85 |
| MmeI | TCCRAC | 1 cut(s) | 504 |
| MnlI | CCTC | 5 cut(s) | 26, 200, 306, 482, 616 |
| MseI | TTAA | 2 cut(s) | 426, 438 |
| MslI | CAYNNNNRTG | 3 cut(s) | 275, 553, 748 |
| MspI | CCGG | 3 cut(s) | 296, 321, 464 |
| MspR9I | CCNGG | 3 cut(s) | 297, 584, 687 |
| Mva1269I | GAATGC | 1 cut(s) | 568 |
| MvaI | CCWGG | 2 cut(s) | 584, 687 |
| MvnI | CGCG | 1 cut(s) | 498 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 157, 801 |
| NciI | CCSGG | 1 cut(s) | 297 |
| NlaIII | CATG | 5 cut(s) | 10, 176, 274, 366, 836 |
| NmuCI | GTSAC | 3 cut(s) | 353, 614, 699 |
| NruI | TCGCGA | 1 cut(s) | 498 |
| NsbI | TGCGCA | 1 cut(s) | 171 |
| NspI | RCATGY | 1 cut(s) | 176 |
| PaeI | GCATGC | 1 cut(s) | 176 |
| PctI | GAATGC | 1 cut(s) | 568 |
| PfeI | GAWTC | 2 cut(s) | 395, 682 |
| PinAI | ACCGGT | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 369, 372, 794 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| Psp124BI | GAGCTC | 2 cut(s) | 711, 832 |
| Psp6I | CCWGG | 2 cut(s) | 582, 685 |
| PspGI | CCWGG | 2 cut(s) | 582, 685 |
| PspPI | GGNCC | 1 cut(s) | 461 |
| PsuI | RGATCY | 3 cut(s) | 240, 432, 526 |
| RruI | TCGCGA | 1 cut(s) | 498 |
| RsaI | GTAC | 3 cut(s) | 253, 544, 777 |
| RsaNI | GTAC | 3 cut(s) | 252, 543, 776 |
| RseI | CAYNNNNRTG | 3 cut(s) | 275, 553, 748 |
| SacI | GAGCTC | 2 cut(s) | 711, 832 |
| SaqAI | TTAA | 2 cut(s) | 426, 438 |
| SatI | GCNGC | 3 cut(s) | 368, 371, 793 |
| Sau96I | GGNCC | 1 cut(s) | 461 |
| SchI | GAGTC | 1 cut(s) | 85 |
| ScrFI | CCNGG | 3 cut(s) | 297, 584, 687 |
| SduI | GDGCHC | 3 cut(s) | 711, 819, 832 |
| SetI | ASST | 9 cut(s) | 37, 136, 355, 511, 557, 711, 758, 781, 832 |
| SfaNI | GCATC | 3 cut(s) | 474, 490, 557 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 275, 553, 748 |
| SmlI | CTYRAG | 2 cut(s) | 187, 823 |
| SmoI | CTYRAG | 2 cut(s) | 187, 823 |
| SphI | GCATGC | 1 cut(s) | 176 |
| Sse9I | AATT | 7 cut(s) | 15, 25, 307, 380, 421, 594, 734 |
| SsiI | CCGC | 2 cut(s) | 367, 580 |
| SspMI | CTAG | 5 cut(s) | 57, 161, 468, 506, 788 |
| SstI | GAGCTC | 2 cut(s) | 711, 832 |
| StyD4I | CCNGG | 3 cut(s) | 295, 582, 685 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 2 cut(s) | 184, 346 |
| TaiI | ACGT | 3 cut(s) | 136, 355, 557 |
| TaqI | TCGA | 2 cut(s) | 348, 417 |
| TasI | AATT | 7 cut(s) | 15, 25, 307, 380, 421, 594, 734 |
| TauI | GCSGC | 1 cut(s) | 370 |
| TfiI | GAWTC | 2 cut(s) | 395, 682 |
| Tru1I | TTAA | 2 cut(s) | 426, 438 |
| Tru9I | TTAA | 2 cut(s) | 426, 438 |
| TscAI | CASTG | 1 cut(s) | 708 |
| TseFI | GTSAC | 3 cut(s) | 353, 614, 699 |
| TseI | GCWGC | 2 cut(s) | 370, 792 |
| Tsp45I | GTSAC | 3 cut(s) | 353, 614, 699 |
| TspRI | CASTG | 1 cut(s) | 708 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 587 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XmiI | GTMKAC | 1 cut(s) | 691 |
| XspI | CTAG | 5 cut(s) | 57, 161, 468, 506, 788 |