ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GATA | PF00320 | 211 - 245 | 2.6e-15 | GATA zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 501 |
| AarI | CACCTGC | 1 cut(s) | 767 |
| AbsI | CCTCGAGG | 1 cut(s) | 678 |
| Acc36I | ACCTGC | 2 cut(s) | 767, 982 |
| AccB1I | GGYRCC | 1 cut(s) | 782 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1057 |
| AciI | CCGC | 2 cut(s) | 126, 798 |
| AclWI | GGATC | 4 cut(s) | 90, 194, 477, 729 |
| AcoI | YGGCCR | 1 cut(s) | 795 |
| AcsI | RAATTY | 3 cut(s) | 55, 486, 711 |
| AcuI | CTGAAG | 1 cut(s) | 765 |
| AfaI | GTAC | 5 cut(s) | 10, 196, 341, 928, 934 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 125, 466, 663, 1057 |
| AgsI | TTSAA | 3 cut(s) | 53, 988, 1037 |
| AhlI | ACTAGT | 1 cut(s) | 929 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 17, 49 |
| AluBI | AGCT | 7 cut(s) | 576, 749, 809, 976, 998, 1043, 1054 |
| AluI | AGCT | 7 cut(s) | 576, 749, 809, 976, 998, 1043, 1054 |
| Alw21I | GWGCWC | 1 cut(s) | 517 |
| AlwI | GGATC | 4 cut(s) | 90, 194, 477, 729 |
| Ama87I | CYCGRG | 2 cut(s) | 678, 1026 |
| AoxI | GGCC | 4 cut(s) | 410, 790, 795, 1072 |
| ApoI | RAATTY | 3 cut(s) | 55, 486, 711 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 502, 534 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 486 |
| AspS9I | GGNCC | 4 cut(s) | 674, 683, 791, 1060 |
| AsuC2I | CCSGG | 1 cut(s) | 794 |
| AsuHPI | GGTGA | 1 cut(s) | 278 |
| AvaI | CYCGRG | 2 cut(s) | 678, 1026 |
| AvaII | GGWCC | 3 cut(s) | 674, 683, 1060 |
| BanI | GGYRCC | 1 cut(s) | 782 |
| BbsI | GAAGAC | 1 cut(s) | 393 |
| Bbv12I | GWGCWC | 1 cut(s) | 517 |
| BccI | CCATC | 2 cut(s) | 40, 1018 |
| BceAI | ACGGC | 1 cut(s) | 605 |
| BciVI | GTATCC | 1 cut(s) | 367 |
| BclI | TGATCA | 4 cut(s) | 175, 280, 364, 526 |
| BcnI | CCSGG | 1 cut(s) | 794 |
| BcuI | ACTAGT | 1 cut(s) | 929 |
| BfaI | CTAG | 3 cut(s) | 192, 930, 945 |
| BfmI | CTRYAG | 2 cut(s) | 804, 936 |
| BfuAI | ACCTGC | 2 cut(s) | 767, 982 |
| BfuI | GTATCC | 1 cut(s) | 367 |
| BmcAI | AGTACT | 3 cut(s) | 10, 928, 934 |
| Bme1390I | CCNGG | 1 cut(s) | 794 |
| Bme18I | GGWCC | 3 cut(s) | 674, 683, 1060 |
| BmeT110I | CYCGRG | 2 cut(s) | 678, 1026 |
| BmgT120I | GGNCC | 4 cut(s) | 674, 683, 791, 1060 |
| BmiI | GGNNCC | 2 cut(s) | 685, 784 |
| BmrFI | CCNGG | 1 cut(s) | 794 |
| BmsI | GCATC | 2 cut(s) | 435, 541 |
| BpiI | GAAGAC | 1 cut(s) | 393 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 27, 661, 693 |
| BpuMI | CCSGG | 1 cut(s) | 794 |
| BsaBI | GATNNNNATC | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 1 cut(s) | 738 |
| BsaWI | WCCGGW | 1 cut(s) | 466 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 658, 688 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 125, 466, 663, 1057 |
| Bse118I | RCCGGY | 1 cut(s) | 788 |
| Bse1I | ACTGG | 3 cut(s) | 413, 553, 772 |
| Bse3DI | GCAATG | 1 cut(s) | 706 |
| Bse8I | GATNNNNATC | 1 cut(s) | 531 |
| BseDI | CCNNGG | 1 cut(s) | 738 |
| BseGI | GGATG | 2 cut(s) | 32, 310 |
| BseJI | GATNNNNATC | 1 cut(s) | 531 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 125, 466, 663, 1057 |
| BseMI | GCAATG | 1 cut(s) | 706 |
| BseMII | CTCAG | 1 cut(s) | 1067 |
| BseNI | ACTGG | 3 cut(s) | 413, 553, 772 |
| BseRI | GAGGAG | 3 cut(s) | 19, 350, 682 |
| BseX3I | CGGCCG | 1 cut(s) | 795 |
| BseYI | CCCAGC | 1 cut(s) | 1050 |
| Bsh1285I | CGRYCG | 1 cut(s) | 798 |
| BshFI | GGCC | 4 cut(s) | 412, 792, 797, 1074 |
| BshNI | GGYRCC | 1 cut(s) | 782 |
| BsiEI | CGRYCG | 1 cut(s) | 798 |
| BsiHKAI | GWGCWC | 1 cut(s) | 517 |
| BsiHKCI | CYCGRG | 2 cut(s) | 678, 1026 |
| BsiSI | CCGG | 3 cut(s) | 467, 789, 794 |
| BslFI | GGGAC | 1 cut(s) | 669 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 125, 466, 663, 1057 |
| BsmFI | GGGAC | 1 cut(s) | 669 |
| BsnI | GGCC | 4 cut(s) | 412, 792, 797, 1074 |
| BsoBI | CYCGRG | 2 cut(s) | 678, 1026 |
| Bsp1286I | GDGCHC | 1 cut(s) | 517 |
| Bsp19I | CCATGG | 1 cut(s) | 738 |
| BspACI | CCGC | 2 cut(s) | 126, 798 |
| BspANI | GGCC | 4 cut(s) | 412, 792, 797, 1074 |
| BspCNI | CTCAG | 1 cut(s) | 1068 |
| BspHI | TCATGA | 1 cut(s) | 912 |
| BspLI | GGNNCC | 2 cut(s) | 685, 784 |
| BspMAI | CTGCAG | 1 cut(s) | 940 |
| BspMI | ACCTGC | 2 cut(s) | 767, 982 |
| BspPI | GGATC | 4 cut(s) | 90, 194, 477, 729 |
| BspT107I | GGYRCC | 1 cut(s) | 782 |
| BsrDI | GCAATG | 1 cut(s) | 706 |
| BsrFI | RCCGGY | 1 cut(s) | 788 |
| BsrI | ACTGG | 3 cut(s) | 413, 553, 772 |
| BssAI | RCCGGY | 1 cut(s) | 788 |
| BssECI | CCNNGG | 1 cut(s) | 738 |
| BssT1I | CCWWGG | 1 cut(s) | 738 |
| Bst4CI | ACNGT | 4 cut(s) | 208, 344, 883, 926 |
| Bst6I | CTCTTC | 1 cut(s) | 104 |
| BstDEI | CTNAG | 1 cut(s) | 1076 |
| BstDSI | CCRYGG | 1 cut(s) | 738 |
| BstF5I | GGATG | 2 cut(s) | 32, 310 |
| BstMCI | CGRYCG | 1 cut(s) | 798 |
| BstSCI | CCNGG | 1 cut(s) | 792 |
| BstSFI | CTRYAG | 2 cut(s) | 804, 936 |
| BstV2I | GAAGAC | 1 cut(s) | 393 |
| BstX2I | RGATCY | 2 cut(s) | 186, 734 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 420 |
| BstYI | RGATCY | 2 cut(s) | 186, 734 |
| BstZI | CGGCCG | 1 cut(s) | 795 |
| BsuI | GTATCC | 1 cut(s) | 367 |
| BsuRI | GGCC | 4 cut(s) | 412, 792, 797, 1074 |
| BtgI | CCRYGG | 1 cut(s) | 738 |
| BtsCI | GGATG | 2 cut(s) | 32, 310 |
| BtsIMutI | CAGTG | 2 cut(s) | 360, 888 |
| BveI | ACCTGC | 2 cut(s) | 767, 982 |
| CciI | TCATGA | 1 cut(s) | 912 |
| Cfr10I | RCCGGY | 1 cut(s) | 788 |
| Cfr13I | GGNCC | 4 cut(s) | 674, 683, 791, 1060 |
| Csp6I | GTAC | 5 cut(s) | 9, 195, 340, 927, 933 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 688, 723 |
| CviAII | CATG | 4 cut(s) | 392, 461, 739, 913 |
| CviQI | GTAC | 5 cut(s) | 9, 195, 340, 927, 933 |
| DdeI | CTNAG | 1 cut(s) | 1076 |
| EaeI | YGGCCR | 1 cut(s) | 795 |
| EagI | CGGCCG | 1 cut(s) | 795 |
| Eam1104I | CTCTTC | 1 cut(s) | 104 |
| EarI | CTCTTC | 1 cut(s) | 104 |
| EclXI | CGGCCG | 1 cut(s) | 795 |
| Eco130I | CCWWGG | 1 cut(s) | 738 |
| Eco47I | GGWCC | 3 cut(s) | 674, 683, 1060 |
| Eco52I | CGGCCG | 1 cut(s) | 795 |
| Eco57I | CTGAAG | 1 cut(s) | 765 |
| Eco88I | CYCGRG | 2 cut(s) | 678, 1026 |
| EcoO109I | RGGNCCY | 1 cut(s) | 683 |
| EcoRI | GAATTC | 1 cut(s) | 711 |
| EcoT14I | CCWWGG | 1 cut(s) | 738 |
| ErhI | CCWWGG | 1 cut(s) | 738 |
| FaeI | CATG | 4 cut(s) | 395, 464, 742, 916 |
| FaqI | GGGAC | 1 cut(s) | 669 |
| FatI | CATG | 4 cut(s) | 391, 460, 738, 912 |
| FauNDI | CATATG | 2 cut(s) | 121, 257 |
| FbaI | TGATCA | 4 cut(s) | 175, 280, 364, 526 |
| FokI | GGATG | 2 cut(s) | 19, 297 |
| FspBI | CTAG | 3 cut(s) | 192, 930, 945 |
| GsaI | CCCAGC | 1 cut(s) | 1054 |
| HaeIII | GGCC | 4 cut(s) | 412, 792, 797, 1074 |
| HapII | CCGG | 3 cut(s) | 467, 789, 794 |
| Hin1II | CATG | 4 cut(s) | 395, 464, 742, 916 |
| HinfI | GANTC | 1 cut(s) | 164 |
| HpaII | CCGG | 3 cut(s) | 467, 789, 794 |
| HphI | GGTGA | 1 cut(s) | 278 |
| Hpy166II | GTNNAC | 1 cut(s) | 423 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 322, 637 |
| Hpy188III | TCNNGA | 6 cut(s) | 521, 536, 861, 913, 1028, 1092 |
| Hpy8I | GTNNAC | 1 cut(s) | 423 |
| Hpy99I | CGWCG | 2 cut(s) | 522, 923 |
| HpyCH4III | ACNGT | 4 cut(s) | 208, 344, 883, 926 |
| HpyCH4V | TGCA | 6 cut(s) | 448, 642, 699, 764, 891, 938 |
| HpyF3I | CTNAG | 1 cut(s) | 1076 |
| Hsp92II | CATG | 4 cut(s) | 395, 464, 742, 916 |
| Ksp22I | TGATCA | 4 cut(s) | 175, 280, 364, 526 |
| LweI | GCATC | 2 cut(s) | 435, 541 |
| MaeI | CTAG | 3 cut(s) | 192, 930, 945 |
| MaeIII | GTNAC | 3 cut(s) | 398, 690, 877 |
| MboII | GAAGA | 7 cut(s) | 91, 291, 398, 744, 907, 1049, 1059 |
| MflI | RGATCY | 2 cut(s) | 186, 734 |
| MhlI | GDGCHC | 1 cut(s) | 517 |
| MluCI | AATT | 6 cut(s) | 55, 372, 486, 582, 711, 982 |
| MlyI | GAGTC | 1 cut(s) | 158 |
| MmeI | TCCRAC | 2 cut(s) | 38, 190 |
| MnlI | CCTC | 6 cut(s) | 328, 660, 674, 687, 714, 1035 |
| MroXI | GAANNNNTTC | 1 cut(s) | 486 |
| MseI | TTAA | 1 cut(s) | 578 |
| MspA1I | CMGCKG | 1 cut(s) | 809 |
| MspI | CCGG | 3 cut(s) | 467, 789, 794 |
| MspR9I | CCNGG | 1 cut(s) | 794 |
| NciI | CCSGG | 1 cut(s) | 794 |
| NcoI | CCATGG | 1 cut(s) | 738 |
| NdeI | CATATG | 2 cut(s) | 121, 257 |
| NlaIII | CATG | 4 cut(s) | 395, 464, 742, 916 |
| NlaIV | GGNNCC | 2 cut(s) | 685, 784 |
| NmuCI | GTSAC | 2 cut(s) | 690, 877 |
| PaeR7I | CTCGAG | 2 cut(s) | 678, 1026 |
| PagI | TCATGA | 1 cut(s) | 912 |
| PaqCI | CACCTGC | 1 cut(s) | 767 |
| PdmI | GAANNNNTTC | 1 cut(s) | 486 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1057 |
| PleI | GAGTC | 1 cut(s) | 158 |
| PpsI | GAGTC | 1 cut(s) | 158 |
| PpuMI | RGGWCCY | 1 cut(s) | 683 |
| PsiI | TTATAA | 1 cut(s) | 501 |
| Psp5II | RGGWCCY | 1 cut(s) | 683 |
| PspFI | CCCAGC | 1 cut(s) | 1050 |
| PspN4I | GGNNCC | 2 cut(s) | 685, 784 |
| PspPI | GGNCC | 4 cut(s) | 674, 683, 791, 1060 |
| PspPPI | RGGWCCY | 1 cut(s) | 683 |
| PspXI | VCTCGAGB | 1 cut(s) | 678 |
| PstI | CTGCAG | 1 cut(s) | 940 |
| PsuI | RGATCY | 2 cut(s) | 186, 734 |
| PvuII | CAGCTG | 1 cut(s) | 809 |
| RsaI | GTAC | 5 cut(s) | 10, 196, 341, 928, 934 |
| RsaNI | GTAC | 5 cut(s) | 9, 195, 340, 927, 933 |
| SaqAI | TTAA | 1 cut(s) | 578 |
| Sau96I | GGNCC | 4 cut(s) | 674, 683, 791, 1060 |
| ScaI | AGTACT | 3 cut(s) | 10, 928, 934 |
| SchI | GAGTC | 1 cut(s) | 158 |
| ScrFI | CCNGG | 1 cut(s) | 794 |
| SduI | GDGCHC | 1 cut(s) | 517 |
| SfaNI | GCATC | 2 cut(s) | 435, 541 |
| SfcI | CTRYAG | 2 cut(s) | 804, 936 |
| Sfr274I | CTCGAG | 2 cut(s) | 678, 1026 |
| SinI | GGWCC | 3 cut(s) | 674, 683, 1060 |
| SlaI | CTCGAG | 2 cut(s) | 678, 1026 |
| SmlI | CTYRAG | 2 cut(s) | 678, 1026 |
| SmoI | CTYRAG | 2 cut(s) | 678, 1026 |
| SpeI | ACTAGT | 1 cut(s) | 929 |
| Sse9I | AATT | 6 cut(s) | 55, 372, 486, 582, 711, 982 |
| SsiI | CCGC | 2 cut(s) | 126, 798 |
| SspMI | CTAG | 3 cut(s) | 192, 930, 945 |
| StyD4I | CCNGG | 1 cut(s) | 792 |
| StyI | CCWWGG | 1 cut(s) | 738 |
| TaaI | ACNGT | 4 cut(s) | 208, 344, 883, 926 |
| TaqI | TCGA | 4 cut(s) | 535, 679, 715, 1027 |
| TaqII | GACCGA | 1 cut(s) | 932 |
| TasI | AATT | 6 cut(s) | 55, 372, 486, 582, 711, 982 |
| TatI | WGTACW | 3 cut(s) | 8, 926, 932 |
| TauI | GCSGC | 1 cut(s) | 800 |
| Tru1I | TTAA | 1 cut(s) | 578 |
| Tru9I | TTAA | 1 cut(s) | 578 |
| TscAI | CASTG | 2 cut(s) | 367, 888 |
| TseFI | GTSAC | 2 cut(s) | 690, 877 |
| Tsp45I | GTSAC | 2 cut(s) | 690, 877 |
| TspDTI | ATGAA | 5 cut(s) | 91, 299, 399, 452, 477 |
| TspRI | CASTG | 2 cut(s) | 367, 888 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1057 |
| VpaK11BI | GGWCC | 3 cut(s) | 674, 683, 1060 |
| XapI | RAATTY | 3 cut(s) | 55, 486, 711 |
| XhoI | CTCGAG | 2 cut(s) | 678, 1026 |
| XmnI | GAANNNNTTC | 1 cut(s) | 486 |
| XspI | CTAG | 3 cut(s) | 192, 930, 945 |
| ZrmI | AGTACT | 3 cut(s) | 10, 928, 934 |