Rmu_sc0043118.1_g000001

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0043118.1
OG0015502
Physical Location & Seq
Forward (+)
1 .. 2378
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0043118.1_g000001.1.cds

Sequence Viewer

Length: 1293 bp
gatgatggaggaggagagcagcttgaacgcatttatgagcgccttgaagctctggatgcagcaactgcagagaagcgtgcagctgaaattctatatggtcttggttttgacaaacagatgcaagcaaagaaaactcgagatttttctggtggttggaggatgaggattgcgcttgcacgtgctctatttattaacccaaccatcctgttgcttgatgagcctaccaatcatcttgatcttgaagcttgtgtgtggttggaggagactctgaagaaatttgaacgcatcttggttgtggtttcacattctcaggatttcctaaatggtgtttgcacaaatatcattcacatgcagagcaagaagctgaagatctactctggaaactatgatcaatatgtccagacacgttcagaactggaagaaaatcagatgaaacagtacaagtgggagcaagaacagattgctaacatgaaagagtatattgctcgttttggtcacggttcagcgaaactagctcgccaggcacaaagcaaagagaagactctagctaaaatggagcgtggcgggcttacggaaaaggtggccagagacaaggttttagtctttcgttttgttgatgtgggaaagctgccaccacctgtacttcagttcgttgaagtctcatttggttacactcctgataatctgatctacaagaacattgactttggtgttgatttggattcgcgtgtagctctggttgggcccaatggagctggaaagagtactctcctgaagctgatgacgggggatttgactcctcttgatggcatggtccggaggcacaatcaccttagaatcgctcaattccatcagcacttgactgagaagcttgatatggagctgtctgccctccagtttatgatcaaagagtacccaggaaatgaggaagaaaagatgagggcttcaattggtaaatttggacttacaggcaaggcacaggtgatgccaatgagcaatttatcagatgggcagaggagccgagtgatatttgcttggttggcgtttaggcagcctcagatgcttctgttggatgagccaactaatcatttggatattgagacaattgactcgctggctgaggcgttgaatgagtgggatgggggtctggttcttgttagccacgatttcaggctcataaaccaggtagctcatgagatttgggtatgtgaaaatcaagctgtgacccggtgggagggtgatattatgcaatttaaaaaccacctaaagtcaaaggctggattaggtgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

430

Amino Acids

48.98

Weight (kDa)

6.11

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60790
fragaria_vesca FvH4_3g31100
malus_domestica MD00G1033600.v1.1 MD11G1145400.v1.1
prunus_persica Prupe.6G108600_v2.0.a1
pyrus_communis pycom11g11860
rosa_chinensis RchiOBHm_Chr5g0057741
rosa_laevigata RLG00000035173
rosa_multiflora Rmu_sc0043118.1_g000001
rosa_roxburghii Rroxscaffold_1G00022750
rosa_rugosa Rorug05G0309100
rosa_samantha Rh5AG377000 Rh5BG388600 Rh5CG413100 Rh5DG402900
rosa_wichuraiana Rw5G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 727
AccIII TCCGGA 1 cut(s) 816
AciI CCGC 1 cut(s) 564
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 3 cut(s) 87, 275, 956
AcuI CTGAAG 4 cut(s) 290, 386, 629, 794
AcvI CACGTG 1 cut(s) 179
AfaI GTAC 4 cut(s) 440, 642, 766, 914
AfiI CCNNNNNNNGG 2 cut(s) 806, 1234
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 7 cut(s) 26, 47, 242, 281, 656, 948, 1129
AjnI CCWGG 3 cut(s) 519, 916, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 4 cut(s) 257, 582, 664, 1094
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 816
AoxI GGCC 2 cut(s) 582, 743
ApaI GGGCCC 1 cut(s) 747
ApeKI GCWGC 5 cut(s) 19, 59, 80, 628, 1051
ApoI RAATTY 3 cut(s) 87, 275, 956
ArsI GACNNNNNNTTYG 2 cut(s) 775, 807
AspLEI GCGC 2 cut(s) 42, 172
AspS9I GGNCC 3 cut(s) 743, 744, 814
AsuC2I CCSGG 1 cut(s) 1228
AsuHPI GGTGA 3 cut(s) 821, 994, 1250
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 747
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 1 cut(s) 747
BbrPI CACGTG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 5 cut(s) 31, 71, 92, 615, 1063
BccI CCATC 5 cut(s) 209, 800, 858, 1001, 1133
BciT130I CCWGG 3 cut(s) 521, 918, 1184
BclI TGATCA 2 cut(s) 388, 903
BcnI CCSGG 1 cut(s) 1228
BcoDI GTCTC 4 cut(s) 257, 582, 664, 1094
BfaI CTAG 2 cut(s) 512, 545
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 43
BglII AGATCT 1 cut(s) 369
BisI GCNGC 5 cut(s) 20, 60, 81, 629, 1052
BlsI GCNGC 5 cut(s) 21, 61, 82, 630, 1053
BmcAI AGTACT 1 cut(s) 766
Bme1390I CCNGG 4 cut(s) 521, 918, 1184, 1228
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 743, 744, 814
BmiI GGNNCC 2 cut(s) 745, 1019
BmrFI CCNGG 4 cut(s) 521, 918, 1184, 1228
BmsI GCATC 5 cut(s) 46, 108, 294, 975, 1050
BpiI GAAGAC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 1 cut(s) 1119
BpuMI CCSGG 1 cut(s) 1228
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 916
BsaWI WCCGGW 1 cut(s) 816
Bsc4I CCNNNNNNNGG 2 cut(s) 806, 1234
Bse1I ACTGG 2 cut(s) 420, 895
BseAI TCCGGA 1 cut(s) 816
BseBI CCWGG 3 cut(s) 521, 918, 1184
BseDI CCNNGG 1 cut(s) 916
BseGI GGATG 5 cut(s) 61, 165, 201, 1078, 1144
BseLI CCNNNNNNNGG 2 cut(s) 806, 1234
BseMII CTCAG 4 cut(s) 323, 855, 1070, 1110
BseNI ACTGG 2 cut(s) 420, 895
BseRI GAGGAG 5 cut(s) 24, 27, 275, 789, 1030
BseSI GKGCMC 1 cut(s) 747
BseXI GCAGC 5 cut(s) 31, 71, 92, 615, 1063
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 727
BshFI GGCC 2 cut(s) 584, 745
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 2 cut(s) 817, 1228
BslI CCNNNNNNNGG 2 cut(s) 806, 1234
BsmAI GTCTC 4 cut(s) 257, 582, 664, 1094
BsnI GGCC 2 cut(s) 584, 745
BsoBI CYCGRG 1 cut(s) 135
Bsp120I GGGCCC 1 cut(s) 743
Bsp1286I GDGCHC 2 cut(s) 184, 747
Bsp13I TCCGGA 1 cut(s) 816
Bsp143I GATC 5 cut(s) 235, 369, 388, 687, 903
BspACI CCGC 1 cut(s) 564
BspANI GGCC 2 cut(s) 584, 745
BspCNI CTCAG 4 cut(s) 322, 856, 1069, 1111
BspEI TCCGGA 1 cut(s) 816
BspFNI CGCG 1 cut(s) 727
BspHI TCATGA 1 cut(s) 1192
BspLI GGNNCC 2 cut(s) 745, 1019
BspMAI CTGCAG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 420, 895
BssECI CCNNGG 1 cut(s) 916
BssMI GATC 5 cut(s) 235, 369, 388, 687, 903
Bst2UI CCWGG 3 cut(s) 521, 918, 1184
Bst4CI ACNGT 2 cut(s) 438, 500
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 6 cut(s) 78, 123, 174, 517, 566, 1116
BstDEI CTNAG 5 cut(s) 309, 833, 864, 1056, 1119
BstF5I GGATG 5 cut(s) 61, 165, 201, 1078, 1144
BstFNI CGCG 1 cut(s) 727
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 2 cut(s) 42, 172
BstKTI GATC 5 cut(s) 238, 372, 391, 690, 906
BstMAI GTCTC 4 cut(s) 257, 582, 664, 1094
BstMBI GATC 5 cut(s) 235, 369, 388, 687, 903
BstMWI GCNNNNNNNGC 8 cut(s) 56, 65, 217, 512, 521, 565, 1040, 1060
BstNI CCWGG 3 cut(s) 521, 918, 1184
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 4 cut(s) 519, 916, 1182, 1226
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 747
BstUI CGCG 1 cut(s) 727
BstV1I GCAGC 5 cut(s) 31, 71, 92, 615, 1063
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 2 cut(s) 584, 745
BtsCI GGATG 5 cut(s) 61, 165, 201, 1078, 1144
Cac8I GCNNGC 6 cut(s) 78, 123, 174, 517, 566, 1116
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 1192
CfoI GCGC 2 cut(s) 42, 172
Cfr13I GGNCC 3 cut(s) 743, 744, 814
CsiI ACCWGGT 1 cut(s) 1182
Csp6I GTAC 4 cut(s) 439, 641, 765, 913
CviAII CATG 4 cut(s) 349, 469, 811, 1193
CviQI GTAC 4 cut(s) 439, 641, 765, 913
DdeI CTNAG 5 cut(s) 309, 833, 864, 1056, 1119
DpnI GATC 5 cut(s) 237, 371, 390, 689, 905
DpnII GATC 5 cut(s) 235, 369, 388, 687, 903
DraI TTTAAA 1 cut(s) 1255
EaeI YGGCCR 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 4 cut(s) 290, 386, 629, 794
Eco72I CACGTG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 135
EcoRII CCWGG 3 cut(s) 519, 916, 1182
EcoT38I GRGCYC 1 cut(s) 747
FaeI CATG 4 cut(s) 352, 472, 814, 1196
FatI CATG 4 cut(s) 348, 468, 810, 1192
FauI CCCGC 1 cut(s) 557
FbaI TGATCA 2 cut(s) 388, 903
Fnu4HI GCNGC 5 cut(s) 20, 60, 81, 629, 1052
FokI GGATG 5 cut(s) 68, 172, 188, 1085, 1151
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 5 cut(s) 20, 60, 81, 629, 1052
FspBI CTAG 2 cut(s) 512, 545
GlaI GCGC 2 cut(s) 41, 171
GluI GCNGC 5 cut(s) 20, 60, 81, 629, 1052
GsuI CTGGAG 1 cut(s) 878
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 2 cut(s) 584, 745
HapII CCGG 2 cut(s) 817, 1228
HhaI GCGC 2 cut(s) 42, 172
Hin1II CATG 4 cut(s) 352, 472, 814, 1196
Hin6I GCGC 2 cut(s) 40, 170
HinP1I GCGC 2 cut(s) 40, 170
HindIII AAGCTT 2 cut(s) 243, 869
HinfI GANTC 6 cut(s) 265, 541, 722, 796, 837, 1109
HpaII CCGG 2 cut(s) 817, 1228
HphI GGTGA 3 cut(s) 821, 994, 1250
Hpy188I TCNGA 6 cut(s) 270, 412, 429, 687, 1006, 1059
HpyCH4III ACNGT 2 cut(s) 438, 500
HpyCH4IV ACGT 2 cut(s) 178, 406
HpyCH4V TGCA 8 cut(s) 59, 68, 80, 121, 176, 333, 352, 1249
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 65, 217, 512, 521, 565, 1040, 1060
HpyF3I CTNAG 5 cut(s) 309, 833, 864, 1056, 1119
HpySE526I ACGT 2 cut(s) 178, 406
Hsp92II CATG 4 cut(s) 352, 472, 814, 1196
HspAI GCGC 2 cut(s) 40, 170
Kpn2I TCCGGA 1 cut(s) 816
Ksp22I TGATCA 2 cut(s) 388, 903
Kzo9I GATC 5 cut(s) 235, 369, 388, 687, 903
LmnI GCTCC 5 cut(s) 448, 556, 752, 880, 1017
Lsp1109I GCAGC 5 cut(s) 31, 71, 92, 615, 1063
LweI GCATC 5 cut(s) 46, 108, 294, 975, 1050
MabI ACCWGGT 1 cut(s) 1182
MaeI CTAG 2 cut(s) 512, 545
MaeII ACGT 2 cut(s) 178, 406
MaeIII GTNAC 3 cut(s) 494, 668, 1222
MalI GATC 5 cut(s) 237, 371, 390, 689, 905
MboI GATC 5 cut(s) 235, 369, 388, 687, 903
MboII GAAGA 5 cut(s) 283, 379, 431, 550, 941
MfeI CAATTG 2 cut(s) 948, 1104
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 2 cut(s) 184, 747
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 8 cut(s) 87, 275, 845, 948, 956, 997, 1104, 1250
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 4 cut(s) 259, 535, 790, 1103
MmeI TCCRAC 3 cut(s) 134, 237, 1050
Mox20I TGGCCA 1 cut(s) 584
MroI TCCGGA 1 cut(s) 816
MscI TGGCCA 1 cut(s) 584
MseI TTAA 3 cut(s) 192, 1254, 1291
MslI CAYNNNNRTG 1 cut(s) 347
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 817, 1228
MspR9I CCNGG 4 cut(s) 521, 918, 1184, 1228
MunI CAATTG 2 cut(s) 948, 1104
MvaI CCWGG 3 cut(s) 521, 918, 1184
MvnI CGCG 1 cut(s) 727
MwoI GCNNNNNNNGC 8 cut(s) 56, 65, 217, 512, 521, 565, 1040, 1060
NciI CCSGG 1 cut(s) 1228
NdeII GATC 5 cut(s) 235, 369, 388, 687, 903
NlaIII CATG 4 cut(s) 352, 472, 814, 1196
NlaIV GGNNCC 2 cut(s) 745, 1019
NmeAIII GCCGAG 1 cut(s) 1046
NmuCI GTSAC 2 cut(s) 494, 1222
NspI RCATGY 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 135
PagI TCATGA 1 cut(s) 1192
PfeI GAWTC 2 cut(s) 722, 837
PkrI GCNGC 5 cut(s) 21, 61, 82, 630, 1053
PleI GAGTC 4 cut(s) 259, 535, 790, 1103
PmaCI CACGTG 1 cut(s) 179
PmlI CACGTG 1 cut(s) 179
PpsI GAGTC 4 cut(s) 259, 535, 790, 1103
Ppu21I YACGTR 1 cut(s) 179
Psp6I CCWGG 3 cut(s) 519, 916, 1182
PspCI CACGTG 1 cut(s) 179
PspGI CCWGG 3 cut(s) 519, 916, 1182
PspN4I GGNNCC 2 cut(s) 745, 1019
PspOMI GGGCCC 1 cut(s) 743
PspPI GGNCC 3 cut(s) 743, 744, 814
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 4 cut(s) 440, 642, 766, 914
RsaNI GTAC 4 cut(s) 439, 641, 765, 913
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 3 cut(s) 192, 1254, 1291
SatI GCNGC 5 cut(s) 20, 60, 81, 629, 1052
Sau3AI GATC 5 cut(s) 235, 369, 388, 687, 903
Sau96I GGNCC 3 cut(s) 743, 744, 814
ScaI AGTACT 1 cut(s) 766
SchI GAGTC 4 cut(s) 259, 535, 790, 1103
ScrFI CCNGG 4 cut(s) 521, 918, 1184, 1228
SduI GDGCHC 2 cut(s) 184, 747
SexAI ACCWGGT 1 cut(s) 1182
SfaNI GCATC 5 cut(s) 46, 108, 294, 975, 1050
SfcI CTRYAG 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 814
SlaI CTCGAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 8 cut(s) 87, 275, 845, 948, 956, 997, 1104, 1250
SsiI CCGC 1 cut(s) 564
SspMI CTAG 2 cut(s) 512, 545
StyD4I CCNGG 4 cut(s) 519, 916, 1182, 1226
TaaI ACNGT 2 cut(s) 438, 500
TaiI ACGT 2 cut(s) 181, 409
TaqI TCGA 1 cut(s) 136
TasI AATT 8 cut(s) 87, 275, 845, 948, 956, 997, 1104, 1250
TatI WGTACW 3 cut(s) 438, 640, 764
TfiI GAWTC 2 cut(s) 722, 837
Tru1I TTAA 3 cut(s) 192, 1254, 1291
Tru9I TTAA 3 cut(s) 192, 1254, 1291
TseFI GTSAC 2 cut(s) 494, 1222
TseI GCWGC 5 cut(s) 19, 59, 80, 628, 1051
Tsp45I GTSAC 2 cut(s) 494, 1222
TspDTI ATGAA 2 cut(s) 446, 485
TspGWI ACGGA 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 3 cut(s) 87, 275, 956
XceI RCATGY 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 135
XspI CTAG 2 cut(s) 512, 545
ZrmI AGTACT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.