Rh5DG402900

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015502
Physical Location & Seq
Forward (+)
63830057 .. 63834598
4542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG402900.1

Sequence Viewer

Length: 1569 bp
ATGATATTCTCATACATATGTATATATTTTTGTATTAAAATTTATTTGTTGTGTTATTTTTCCAGACGCTATGGTTTACTTGGGTTGAATGGGTGTGGTAAATCTACTCTCCTTACTGCAATAGGGTGCCGAGAGCTTCCTATTCCAGATCACATGGATATCTATCATCTCAGCAGGGAAATTGAAGCTTCAGATATGTCTTCACTTGATGCTGTCATTAGCTGTGATGAGGAGAGGATTAGATTGGAGAAAGAAGTTGAAGAATTGGCAGCTCAGGATGATGGAGGTGGAGAGCAGCTTGAACGCATTTATGAGCGCCTTGAAGCTCTGGATGCAGCAACTGCAGAGAAGCGTGCAGCTGAAATTCTATATGGTCTTGGTTTTGACAAACAGATGCAAGCAAAGAAAACTCGAGATTTTTCTGGTGGTTGGAGGATGAGGATTGCGCTTGCACGTGCTCTATTTATTAACCCAACCATCCTGTTGCTTGATGAGCCTACCAATCATCTTGATCTTGAAGCTTGTGTGTGGTTGGAGGAGACTCTGAAGAAATTTGAACGCATCTTGGTTGTGGTTTCACATTCTCAGGATTTCCTAAATGGTGTTTGCACAAATATCATTCACATGCAGAGCAAGAAGCTGAAGATCTACTCTGGAAACTATGATCAATATGTCCAGACACGTTCAGAACTGGAAGAAAATCAGATGAAACAGTACAAGTGGGAGCAAGAACAGATTGCTAACATGAAAGAGTATATTGCTCGTTTTGGTCACGGTTCAGCGAAACTAGCTCGCCAGGCACAAAGCAAAGAGAAGACTCTAGCTAAAATGGAGCGTGGTGGGCTTACGGAAAAGGTGGCCAGAGACAAGGTTTTAGTCTTTCGTTTTGTTGATGTGGGAAAGCTGCCACCACCTGTACTTCAGTTCGTTGAAGTCTCATTTGGTTACACTCCTGATAATCTGATCTACAAGAACATTGACTTTGGTGTTGATTTGGATTCGCGTGTAGCTCTGGTTGGGCCCAATGGAGCTGGAAAGAGTACTCTCCTGAAGCTGATGACGGGGGATTTGACTCCTCTTGATGGCATGGTCCGGAGGCACAATCACCTTAGAATCGCTCAATTCCATCAGCACTTGACTGAGAAGCTTGATATGGAGCTGTCTGCCCTCCAGTTTATGATCAAAGAGTACCCAGGAAATGAGGAAGAAAAGATGAGGGCTTCAATTGGTAAATTTGGACTTACAGGCAAGGCACAGGTGATGCCAATGAGCAATTTATCAGATGGGCAGAGGAGCCGAGTGATATTTGCTTGGTTGGCGTTTAGGCAGCCTCAGATGCTTCTGTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCGCTGGCTGAGGCGTTGAATGAGTGGGATGGGGGTCTGGTTCTTGTTAGCCACGATTTCAGGCTCATAAACCAGGTAGCTCATGAGATTTGGGTATGTGAAAATCAAGCTGTGACCCGGTGGGAGGGTGATATTATGCAATTTAAAAACCACCTAAAGTCAAAGGCTGGATTAGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

522

Amino Acids

59.52

Weight (kDa)

5.78

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 21 - 168 2.7e-19 ABC transporter
ABC_tran_Xtn PF12848 207 - 283 1.4e-22 ABC transporter
ABC_tran PF00005 324 - 454 3.2e-22 ABC transporter
AAA_21 PF13304 413 - 481 1e-06 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60790
fragaria_vesca FvH4_3g31100
malus_domestica MD00G1033600.v1.1 MD11G1145400.v1.1
prunus_persica Prupe.6G108600_v2.0.a1
pyrus_communis pycom11g11860
rosa_chinensis RchiOBHm_Chr5g0057741
rosa_laevigata RLG00000035173
rosa_multiflora Rmu_sc0043118.1_g000001
rosa_roxburghii Rroxscaffold_1G00022750
rosa_rugosa Rorug05G0309100
rosa_samantha Rh5AG377000 Rh5BG388600 Rh5CG413100 Rh5DG402900
rosa_wichuraiana Rw5G035600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 126
AccII CGCG 1 cut(s) 1003
AccIII TCCGGA 1 cut(s) 1092
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 4 cut(s) 39, 363, 551, 1232
AcuI CTGAAG 5 cut(s) 174, 566, 662, 905, 1070
AcvI CACGTG 1 cut(s) 455
AfaI GTAC 4 cut(s) 716, 918, 1042, 1190
AfiI CCNNNNNNNGG 2 cut(s) 1082, 1510
AflIII ACRYGT 1 cut(s) 680
AjnI CCWGG 3 cut(s) 795, 1192, 1458
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 4 cut(s) 533, 858, 940, 1370
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 411
Aor13HI TCCGGA 1 cut(s) 1092
AoxI GGCC 2 cut(s) 858, 1019
ApaI GGGCCC 1 cut(s) 1023
ApeKI GCWGC 6 cut(s) 269, 295, 335, 356, 904, 1327
ApoI RAATTY 4 cut(s) 39, 363, 551, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 1051, 1083
AspLEI GCGC 2 cut(s) 318, 448
AspS9I GGNCC 3 cut(s) 1019, 1020, 1090
AsuC2I CCSGG 1 cut(s) 1504
AsuHPI GGTGA 3 cut(s) 1097, 1270, 1526
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 1090
BaeGI GKGCMC 1 cut(s) 1023
BalI TGGCCA 1 cut(s) 860
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 1023
BbrPI CACGTG 1 cut(s) 455
BbsI GAAGAC 2 cut(s) 192, 821
Bbv12I GWGCWC 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 1395
BbvI GCAGC 6 cut(s) 281, 307, 347, 368, 891, 1339
BccI CCATC 6 cut(s) 275, 485, 1076, 1134, 1277, 1409
BciT130I CCWGG 3 cut(s) 797, 1194, 1460
BclI TGATCA 2 cut(s) 664, 1179
BcnI CCSGG 1 cut(s) 1504
BcoDI GTCTC 4 cut(s) 533, 858, 940, 1370
BfaI CTAG 2 cut(s) 788, 821
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 319
BglII AGATCT 1 cut(s) 645
BisI GCNGC 6 cut(s) 270, 296, 336, 357, 905, 1328
BlsI GCNGC 6 cut(s) 271, 297, 337, 358, 906, 1329
BmcAI AGTACT 1 cut(s) 1042
Bme1390I CCNGG 4 cut(s) 797, 1194, 1460, 1504
Bme18I GGWCC 1 cut(s) 1090
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 3 cut(s) 1019, 1020, 1090
BmiI GGNNCC 3 cut(s) 128, 1021, 1295
BmrFI CCNGG 4 cut(s) 797, 1194, 1460, 1504
BmsI GCATC 6 cut(s) 199, 322, 384, 570, 1251, 1326
BpiI GAAGAC 2 cut(s) 192, 821
BpmI CTGGAG 1 cut(s) 1154
Bpu10I CCTNAGC 2 cut(s) 273, 1395
BpuMI CCSGG 1 cut(s) 1504
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 1192
BsaWI WCCGGW 1 cut(s) 1092
Bsc4I CCNNNNNNNGG 2 cut(s) 1082, 1510
Bse1I ACTGG 2 cut(s) 696, 1171
Bse8I GATNNNNATC 1 cut(s) 162
BseAI TCCGGA 1 cut(s) 1092
BseBI CCWGG 3 cut(s) 797, 1194, 1460
BseDI CCNNGG 1 cut(s) 1192
BseGI GGATG 6 cut(s) 283, 337, 441, 477, 1354, 1420
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 1082, 1510
BseMII CTCAG 6 cut(s) 184, 287, 599, 1131, 1346, 1386
BseNI ACTGG 2 cut(s) 696, 1171
BseRI GAGGAG 4 cut(s) 245, 551, 1065, 1306
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 6 cut(s) 281, 307, 347, 368, 891, 1339
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 1003
BshFI GGCC 2 cut(s) 860, 1021
BshNI GGYRCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 1093, 1504
BslI CCNNNNNNNGG 2 cut(s) 1082, 1510
BsmAI GTCTC 4 cut(s) 533, 858, 940, 1370
BsnI GGCC 2 cut(s) 860, 1021
BsoBI CYCGRG 1 cut(s) 411
Bsp120I GGGCCC 1 cut(s) 1019
Bsp1286I GDGCHC 2 cut(s) 460, 1023
Bsp13I TCCGGA 1 cut(s) 1092
Bsp143I GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
BspANI GGCC 2 cut(s) 860, 1021
BspCNI CTCAG 6 cut(s) 183, 286, 598, 1132, 1345, 1387
BspEI TCCGGA 1 cut(s) 1092
BspFNI CGCG 1 cut(s) 1003
BspHI TCATGA 1 cut(s) 1468
BspLI GGNNCC 3 cut(s) 128, 1021, 1295
BspMAI CTGCAG 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 126
BsrI ACTGG 2 cut(s) 696, 1171
BssECI CCNNGG 1 cut(s) 1192
BssMI GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
Bst2UI CCWGG 3 cut(s) 797, 1194, 1460
Bst4CI ACNGT 2 cut(s) 714, 776
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 5 cut(s) 354, 399, 450, 793, 1392
BstDEI CTNAG 7 cut(s) 170, 273, 585, 1109, 1140, 1332, 1395
BstF5I GGATG 6 cut(s) 283, 337, 441, 477, 1354, 1420
BstFNI CGCG 1 cut(s) 1003
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 2 cut(s) 318, 448
BstKTI GATC 6 cut(s) 151, 514, 648, 667, 966, 1182
BstMAI GTCTC 4 cut(s) 533, 858, 940, 1370
BstMBI GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
BstMWI GCNNNNNNNGC 8 cut(s) 332, 341, 493, 788, 797, 841, 1316, 1336
BstNI CCWGG 3 cut(s) 797, 1194, 1460
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 4 cut(s) 795, 1192, 1458, 1502
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 1023
BstUI CGCG 1 cut(s) 1003
BstV1I GCAGC 6 cut(s) 281, 307, 347, 368, 891, 1339
BstV2I GAAGAC 2 cut(s) 192, 821
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuRI GGCC 2 cut(s) 860, 1021
BtsCI GGATG 6 cut(s) 283, 337, 441, 477, 1354, 1420
Cac8I GCNNGC 5 cut(s) 354, 399, 450, 793, 1392
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 1468
CfoI GCGC 2 cut(s) 318, 448
Cfr13I GGNCC 3 cut(s) 1019, 1020, 1090
CseI GACGC 1 cut(s) 75
CsiI ACCWGGT 1 cut(s) 1458
Csp6I GTAC 4 cut(s) 715, 917, 1041, 1189
CviAII CATG 5 cut(s) 154, 625, 745, 1087, 1469
CviQI GTAC 4 cut(s) 715, 917, 1041, 1189
DdeI CTNAG 7 cut(s) 170, 273, 585, 1109, 1140, 1332, 1395
DpnI GATC 6 cut(s) 150, 513, 647, 666, 965, 1181
DpnII GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
DraI TTTAAA 1 cut(s) 1531
EaeI YGGCCR 1 cut(s) 858
Eco24I GRGCYC 1 cut(s) 1023
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 1090
Eco57I CTGAAG 5 cut(s) 174, 566, 662, 905, 1070
Eco72I CACGTG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 795, 1192, 1458
EcoRV GATATC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 1023
FaeI CATG 5 cut(s) 157, 628, 748, 1090, 1472
FatI CATG 5 cut(s) 153, 624, 744, 1086, 1468
FauNDI CATATG 1 cut(s) 17
FbaI TGATCA 2 cut(s) 664, 1179
Fnu4HI GCNGC 6 cut(s) 270, 296, 336, 357, 905, 1328
FokI GGATG 6 cut(s) 290, 344, 448, 464, 1361, 1427
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 6 cut(s) 270, 296, 336, 357, 905, 1328
FspBI CTAG 2 cut(s) 788, 821
GlaI GCGC 2 cut(s) 317, 447
GluI GCNGC 6 cut(s) 270, 296, 336, 357, 905, 1328
GsuI CTGGAG 1 cut(s) 1154
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 860, 1021
HapII CCGG 2 cut(s) 1093, 1504
HgaI GACGC 1 cut(s) 75
HhaI GCGC 2 cut(s) 318, 448
Hin1II CATG 5 cut(s) 157, 628, 748, 1090, 1472
Hin6I GCGC 2 cut(s) 316, 446
HinP1I GCGC 2 cut(s) 316, 446
HindIII AAGCTT 3 cut(s) 186, 519, 1145
HinfI GANTC 6 cut(s) 541, 817, 998, 1072, 1113, 1385
HpaII CCGG 2 cut(s) 1093, 1504
HphI GGTGA 3 cut(s) 1097, 1270, 1526
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 7 cut(s) 193, 546, 688, 705, 963, 1282, 1335
Hpy8I GTNNAC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 714, 776
HpyCH4IV ACGT 2 cut(s) 454, 682
HpyCH4V TGCA 9 cut(s) 119, 335, 344, 356, 397, 452, 609, 628, 1525
HpyF10VI GCNNNNNNNGC 8 cut(s) 332, 341, 493, 788, 797, 841, 1316, 1336
HpyF3I CTNAG 7 cut(s) 170, 273, 585, 1109, 1140, 1332, 1395
HpySE526I ACGT 2 cut(s) 454, 682
Hsp92II CATG 5 cut(s) 157, 628, 748, 1090, 1472
HspAI GCGC 2 cut(s) 316, 446
Kpn2I TCCGGA 1 cut(s) 1092
Ksp22I TGATCA 2 cut(s) 664, 1179
Kzo9I GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
LmnI GCTCC 5 cut(s) 724, 832, 1028, 1156, 1293
Lsp1109I GCAGC 6 cut(s) 281, 307, 347, 368, 891, 1339
LweI GCATC 6 cut(s) 199, 322, 384, 570, 1251, 1326
MabI ACCWGGT 1 cut(s) 1458
MaeI CTAG 2 cut(s) 788, 821
MaeII ACGT 2 cut(s) 454, 682
MaeIII GTNAC 3 cut(s) 770, 944, 1498
MalI GATC 6 cut(s) 150, 513, 647, 666, 965, 1181
MboI GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
MboII GAAGA 7 cut(s) 192, 272, 559, 655, 707, 826, 1217
MfeI CAATTG 2 cut(s) 1224, 1380
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 2 cut(s) 460, 1023
MlsI TGGCCA 1 cut(s) 860
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 4 cut(s) 535, 811, 1066, 1379
MmeI TCCRAC 3 cut(s) 410, 513, 1326
Mox20I TGGCCA 1 cut(s) 860
MroI TCCGGA 1 cut(s) 1092
MscI TGGCCA 1 cut(s) 860
MseI TTAA 4 cut(s) 36, 468, 1530, 1567
MslI CAYNNNNRTG 2 cut(s) 16, 623
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 1093, 1504
MspR9I CCNGG 4 cut(s) 797, 1194, 1460, 1504
MunI CAATTG 2 cut(s) 1224, 1380
MvaI CCWGG 3 cut(s) 797, 1194, 1460
MvnI CGCG 1 cut(s) 1003
MwoI GCNNNNNNNGC 8 cut(s) 332, 341, 493, 788, 797, 841, 1316, 1336
NciI CCSGG 1 cut(s) 1504
NdeI CATATG 1 cut(s) 17
NdeII GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
NlaIII CATG 5 cut(s) 157, 628, 748, 1090, 1472
NlaIV GGNNCC 3 cut(s) 128, 1021, 1295
NmeAIII GCCGAG 2 cut(s) 155, 1322
NmuCI GTSAC 2 cut(s) 770, 1498
NspI RCATGY 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 411
PagI TCATGA 1 cut(s) 1468
PfeI GAWTC 2 cut(s) 998, 1113
PkrI GCNGC 6 cut(s) 271, 297, 337, 358, 906, 1329
PleI GAGTC 4 cut(s) 535, 811, 1066, 1379
PmaCI CACGTG 1 cut(s) 455
PmlI CACGTG 1 cut(s) 455
PpsI GAGTC 4 cut(s) 535, 811, 1066, 1379
Ppu21I YACGTR 1 cut(s) 455
Psp6I CCWGG 3 cut(s) 795, 1192, 1458
PspCI CACGTG 1 cut(s) 455
PspGI CCWGG 3 cut(s) 795, 1192, 1458
PspN4I GGNNCC 3 cut(s) 128, 1021, 1295
PspOMI GGGCCC 1 cut(s) 1019
PspPI GGNCC 3 cut(s) 1019, 1020, 1090
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 645
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 4 cut(s) 716, 918, 1042, 1190
RsaNI GTAC 4 cut(s) 715, 917, 1041, 1189
RseI CAYNNNNRTG 2 cut(s) 16, 623
SaqAI TTAA 4 cut(s) 36, 468, 1530, 1567
SatI GCNGC 6 cut(s) 270, 296, 336, 357, 905, 1328
Sau3AI GATC 6 cut(s) 148, 511, 645, 664, 963, 1179
Sau96I GGNCC 3 cut(s) 1019, 1020, 1090
ScaI AGTACT 1 cut(s) 1042
SchI GAGTC 4 cut(s) 535, 811, 1066, 1379
ScrFI CCNGG 4 cut(s) 797, 1194, 1460, 1504
SduI GDGCHC 2 cut(s) 460, 1023
SexAI ACCWGGT 1 cut(s) 1458
SfaNI GCATC 6 cut(s) 199, 322, 384, 570, 1251, 1326
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 1090
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 16, 623
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
SspMI CTAG 2 cut(s) 788, 821
StyD4I CCNGG 4 cut(s) 795, 1192, 1458, 1502
TaaI ACNGT 2 cut(s) 714, 776
TaiI ACGT 2 cut(s) 457, 685
TaqI TCGA 1 cut(s) 412
TatI WGTACW 3 cut(s) 714, 916, 1040
TfiI GAWTC 2 cut(s) 998, 1113
Tru1I TTAA 4 cut(s) 36, 468, 1530, 1567
Tru9I TTAA 4 cut(s) 36, 468, 1530, 1567
TseFI GTSAC 2 cut(s) 770, 1498
TseI GCWGC 6 cut(s) 269, 295, 335, 356, 904, 1327
Tsp45I GTSAC 2 cut(s) 770, 1498
TspDTI ATGAA 2 cut(s) 722, 761
TspGWI ACGGA 1 cut(s) 863
VpaK11BI GGWCC 1 cut(s) 1090
XapI RAATTY 4 cut(s) 39, 363, 551, 1232
XceI RCATGY 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 411
XspI CTAG 2 cut(s) 788, 821
ZrmI AGTACT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.