MD11G1264800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017744
Physical Location & Seq
Forward (+)
37993186 .. 37993709
524 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1264800.v1.1.491

Sequence Viewer

Length: 411 bp
ATGTCCACATCTGATCCTTCTTCACCTGCCTCATCGAAGTCGGAAAGTACTACTGCAGGCTCTTCAAGTTGTACAAGTACTACTCCAAGTATTCAAATGGTTTCCAAGTCGGTATCTGAGAGGCTTCTGGGGAAGTTTTTTGATGCTTCCCAATACGACTTCGATTACAAGCAGAGTGGTCTGTGGTCTCCTCCATTACGCCGGAGGGTGTTTCTTGACTCACCCGGGAATATTATCATATCGTGTTGTGATGAAGATGAAGAAATATACTGCTGCAAACTTAAGAATGCCAAGATGGCTTGGCCCAGACGCTTCTTCTCTTTGATCGCTGGAAATGTTTTCTCTTTGGGAGTAACATTGTCTGACGATATAAGATGTTTGTGTGGATACATAATGGATTTGGATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.0

Weight (kDa)

5.06

Isoelectric Point (pI)

81.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017744)

Species Orthologous Gene IDs
malus_domestica MD11G1264800.v1.1
prunus_persica Prupe.4G161500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030711
rosa_laevigata RLG00000033246
rosa_multiflora Rmu_sc0003238.1_g000033
rosa_roxburghii Rroxscaffold_1G00049600
rosa_rugosa Rorug05G0120300
rosa_samantha Rh5BG210900 Rh5CG234600 Rh5DG216200
rosa_wichuraiana Rw0G000920 Rw5G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 34
AclWI GGATC 1 cut(s) 8
AfaI GTAC 3 cut(s) 49, 73, 79
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 66, 95
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 8
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 303
AsuC2I CCSGG 2 cut(s) 225, 226
AsuHPI GGTGA 2 cut(s) 15, 213
AvaI CYCGRG 1 cut(s) 224
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 289
BciVI GTATCC 1 cut(s) 380
BcnI CCSGG 2 cut(s) 225, 226
BcoDI GTCTC 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 281
BfuAI ACCTGC 1 cut(s) 34
BfuI GTATCC 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmcAI AGTACT 2 cut(s) 49, 79
Bme1390I CCNGG 2 cut(s) 225, 226
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 225, 226
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 225, 226
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 202, 225
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 304
Bso31I GGTCTC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 2 cut(s) 13, 324
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 1 cut(s) 8
BspQI GCTCTTC 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 13, 324
Bst6I CTCTTC 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 117
BstKTI GATC 2 cut(s) 16, 327
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 13, 324
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 223, 224
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 260
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 304
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 303
Cfr9I CCCGGG 1 cut(s) 224
CseI GACGC 1 cut(s) 318
Csp6I GTAC 3 cut(s) 48, 72, 78
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviJI RGCY 4 cut(s) 60, 124, 299, 304
CviKI_1 RGCY 4 cut(s) 60, 124, 299, 304
CviQI GTAC 3 cut(s) 48, 72, 78
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 15, 326
DpnII GATC 2 cut(s) 13, 324
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 224
FaiI YATR 4 cut(s) 239, 268, 371, 392
Fnu4HI GCNGC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 304
HapII CCGG 2 cut(s) 202, 225
HgaI GACGC 1 cut(s) 318
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 202, 225
HphI GGTGA 2 cut(s) 15, 213
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 13, 43, 118, 364
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 56, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 117
Kzo9I GATC 2 cut(s) 13, 324
LguI GCTCTTC 1 cut(s) 67
LpnPI CCDG 7 cut(s) 39, 42, 113, 215, 238, 315, 319
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 15, 326
MboI GATC 2 cut(s) 13, 324
MboII GAAGA 5 cut(s) 12, 54, 266, 272, 307
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 4 cut(s) 40, 114, 198, 201
MseI TTAA 2 cut(s) 282, 409
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 2 cut(s) 202, 225
MspR9I CCNGG 2 cut(s) 225, 226
Mva1269I GAATGC 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 2 cut(s) 225, 226
NdeII GATC 2 cut(s) 13, 324
PaqCI CACCTGC 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 67
PctI GAATGC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 303
PstI CTGCAG 1 cut(s) 58
RsaI GTAC 3 cut(s) 49, 73, 79
RsaNI GTAC 3 cut(s) 48, 72, 78
SapI GCTCTTC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 282, 409
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 13, 324
Sau96I GGNCC 1 cut(s) 303
ScaI AGTACT 2 cut(s) 49, 79
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 225, 226
SetI ASST 1 cut(s) 28
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 54
SmaI CCCGGG 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SspI AATATT 1 cut(s) 232
StyD4I CCNGG 2 cut(s) 223, 224
TaqI TCGA 2 cut(s) 35, 162
TatI WGTACW 3 cut(s) 47, 71, 77
Tru1I TTAA 2 cut(s) 282, 409
Tru9I TTAA 2 cut(s) 282, 409
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 2 cut(s) 267, 273
TspMI CCCGGG 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 224
ZrmI AGTACT 2 cut(s) 49, 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.