Rw0G000920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00027
OG0017744
Physical Location & Seq
Reverse (-)
22014 .. 22946
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000920.1

Sequence Viewer

Length: 264 bp
ATGGTTTCAAAATCGGTGTCTGACAGGCTGCTGGGCAAGTTCTTTGATGCCTCGCAATACGACTTTGATTATGAGCAAAGTGGTTTGTGGTCTCCTCCACTACGCCAAAGTGTGTTTCTCGACTCACCGGGGAATATAATCTCGTGTTTTGATCATCAAGATGATGAAGAAAAAAGATTCTACTCCAAGCTTAAGAGTGCCAAGATGGCATGGCCTAGACGCTTCTTTTGTTTGATCGCTGCCTTATGGTGCTCTTCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.08

Weight (kDa)

6.54

Isoelectric Point (pI)

85.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017744)

Species Orthologous Gene IDs
malus_domestica MD11G1264800.v1.1
prunus_persica Prupe.4G161500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030711
rosa_laevigata RLG00000033246
rosa_multiflora Rmu_sc0003238.1_g000033
rosa_roxburghii Rroxscaffold_1G00049600
rosa_rugosa Rorug05G0120300
rosa_samantha Rh5BG210900 Rh5CG234600 Rh5DG216200
rosa_wichuraiana Rw0G000920 Rw5G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 28, 239
ArsI GACNNNNNNTTYG 3 cut(s) 34, 210, 242
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 117
BauI CACGAG 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 15, 226
BccI CCATC 1 cut(s) 199
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 216
BfrI CTTAAG 1 cut(s) 191
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 2 cut(s) 29, 240
BlsI GCNGC 2 cut(s) 30, 241
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 15, 226
BseYI CCCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 151, 234
BspANI GGCC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 2 cut(s) 151, 234
BssSI CACGAG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 259
BstAFI CTTAAG 1 cut(s) 191
BstKTI GATC 2 cut(s) 154, 237
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 2 cut(s) 151, 234
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 15, 226
BsuRI GGCC 1 cut(s) 214
CseI GACGC 1 cut(s) 228
CviAII CATG 1 cut(s) 210
CviJI RGCY 3 cut(s) 28, 190, 214
CviKI_1 RGCY 3 cut(s) 28, 190, 214
DpnI GATC 2 cut(s) 153, 236
DpnII GATC 2 cut(s) 151, 234
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 240
FaeI CATG 1 cut(s) 213
FaiI YATR 4 cut(s) 72, 137, 211, 247
FatI CATG 1 cut(s) 209
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 29, 240
Fsp4HI GCNGC 2 cut(s) 29, 240
FspBI CTAG 1 cut(s) 216
GluI GCNGC 2 cut(s) 29, 240
GsaI CCCAGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 122, 177
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 119, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 234
LguI GCTCTTC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 10, 17, 141, 243
Lsp1109I GCAGC 2 cut(s) 15, 226
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 216
MalI GATC 2 cut(s) 153, 236
MboI GATC 2 cut(s) 151, 234
MboII GAAGA 2 cut(s) 179, 246
MhlI GDGCHC 1 cut(s) 254
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 61, 105
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 159
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 129
NdeII GATC 2 cut(s) 151, 234
NlaIII CATG 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 30, 241
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 29, 240
Sau3AI GATC 2 cut(s) 151, 234
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 254
SetI ASST 1 cut(s) 192
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 127
TaqI TCGA 1 cut(s) 120
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 2 cut(s) 28, 239
TspDTI ATGAA 1 cut(s) 180
Vha464I CTTAAG 1 cut(s) 191
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.