Rmu_sc0003238.1_g000033

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003238.1
OG0017744
Physical Location & Seq
Reverse (-)
205467 .. 205865
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003238.1_g000033.1.cds

Sequence Viewer

Length: 399 bp
atgtccggggaaccttcttcaccggcttcgtcttcaaattttgaaactgagcagtcttattcagacagcagtatttctccgagtccaagtattcaaatggtttcaaaatcggtgtctgacaggctgctgggcaagttctttgatgcctcgcaatacgactttgattatgagcaaagtggtttgtggtctcctccactacgccgaagtgtgtttctcgactcaccggggaatataatctcgtgttttgatcatcaagatgatgaagaaaaaagattctactccaagcttaagagtgccaagatggcatggcctagacgcttcttttgtttgatcgctgtaagtaaaacttgctttaaaattcttttgtgtacatttgctgttcttaattgcgagctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.92

Weight (kDa)

5.35

Isoelectric Point (pI)

95.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017744)

Species Orthologous Gene IDs
malus_domestica MD11G1264800.v1.1
prunus_persica Prupe.4G161500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030711
rosa_laevigata RLG00000033246
rosa_multiflora Rmu_sc0003238.1_g000033
rosa_roxburghii Rroxscaffold_1G00049600
rosa_rugosa Rorug05G0120300
rosa_samantha Rh5BG210900 Rh5CG234600 Rh5DG216200
rosa_wichuraiana Rw0G000920 Rw5G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 37, 357
AfaI GTAC 1 cut(s) 370
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 4 cut(s) 36, 44, 95, 105
AluBI AGCT 2 cut(s) 286, 394
AluI AGCT 2 cut(s) 286, 394
Alw26I GTCTC 1 cut(s) 192
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 2 cut(s) 37, 357
ArsI GACNNNNNNTTYG 4 cut(s) 98, 130, 306, 338
AsuC2I CCSGG 2 cut(s) 7, 225
AsuHPI GGTGA 2 cut(s) 12, 213
BauI CACGAG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 295
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 2 cut(s) 7, 225
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 2 cut(s) 7, 225
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 2 cut(s) 7, 225
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 24
BpuMI CCSGG 2 cut(s) 7, 225
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 6, 224
Bse118I RCCGGY 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 6, 224
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 1 cut(s) 310
BsiSI CCGG 3 cut(s) 6, 23, 224
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 368
Bsp143I GATC 2 cut(s) 247, 330
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 6, 224
BssMI GATC 2 cut(s) 247, 330
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
BstAFI CTTAAG 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 2 cut(s) 250, 333
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 247, 330
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 5, 223
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 392
Cfr10I RCCGGY 1 cut(s) 22
CseI GACGC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 306
CviJI RGCY 5 cut(s) 26, 124, 286, 310, 394
CviKI_1 RGCY 5 cut(s) 26, 124, 286, 310, 394
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 249, 332
DpnII GATC 2 cut(s) 247, 330
DraI TTTAAA 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 192
FaeI CATG 1 cut(s) 309
FaiI YATR 3 cut(s) 168, 233, 307
FalI AAGNNNNNCTT 2 cut(s) 331, 363
FatI CATG 1 cut(s) 305
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 125
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 310
HapII CCGG 3 cut(s) 6, 23, 224
HgaI GACGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 82, 218, 273
HpaII CCGG 3 cut(s) 6, 23, 224
HphI GGTGA 2 cut(s) 12, 213
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 3 cut(s) 64, 81, 118
Hpy188III TCNNGA 2 cut(s) 215, 254
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 330
LpnPI CCDG 5 cut(s) 19, 36, 106, 113, 237
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 312
MalI GATC 2 cut(s) 249, 332
MboI GATC 2 cut(s) 247, 330
MboII GAAGA 3 cut(s) 9, 24, 275
MluCI AATT 3 cut(s) 37, 357, 385
MlyI GAGTC 2 cut(s) 91, 212
MnlI CCTC 2 cut(s) 157, 201
MseI TTAA 3 cut(s) 288, 354, 384
MslI CAYNNNNRTG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 3 cut(s) 6, 23, 224
MspR9I CCNGG 2 cut(s) 7, 225
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 2 cut(s) 7, 225
NdeII GATC 2 cut(s) 247, 330
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 2 cut(s) 90, 212
PpsI GAGTC 2 cut(s) 90, 212
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 3 cut(s) 288, 354, 384
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 247, 330
SchI GAGTC 2 cut(s) 91, 212
ScrFI CCNGG 2 cut(s) 7, 225
SetI ASST 3 cut(s) 16, 288, 396
SfaNI GCATC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 3 cut(s) 37, 357, 385
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 5, 223
TaqI TCGA 1 cut(s) 216
TasI AATT 3 cut(s) 37, 357, 385
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 3 cut(s) 288, 354, 384
Tru9I TTAA 3 cut(s) 288, 354, 384
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 276
Vha464I CTTAAG 1 cut(s) 287
XapI RAATTY 2 cut(s) 37, 357
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.