Rroxscaffold_1G00049600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017744
Physical Location & Seq
Forward (+)
69926390 .. 69927975
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049600.1

Sequence Viewer

Length: 354 bp
ATGTCCGGGGAACCTTCTTCACCGGCTTCGTCCTCAAATTTTGAAACCGAGCAGTCTTATTCAGACAGCAGTATTTCTCCGAGTCCAAGAATTCAAATGGTTTCAAAATCGGTGTCTGACAGGCTGCTGGGCAAGTTCTTTGATGCCTCGCAATACGACTTTGATTATGAGCAAAGTGGTTTGTGGTCTCCTCCACTACGGCGAAGCGTGTTTCTCGACTCACCCGGGAATATAATCTCGTGTTTTGATCATCAAGATGATGATGAAAAAGGATTCTACTCCAAGCTTAAGAGTGCCAAGATGGCATGGCCTAGACGCTTCTTTTGTTTGATCGCTGCCTTATGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.21

Weight (kDa)

5.01

Isoelectric Point (pI)

96.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017744)

Species Orthologous Gene IDs
malus_domestica MD11G1264800.v1.1
prunus_persica Prupe.4G161500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030711
rosa_laevigata RLG00000033246
rosa_multiflora Rmu_sc0003238.1_g000033
rosa_roxburghii Rroxscaffold_1G00049600
rosa_rugosa Rorug05G0120300
rosa_samantha Rh5BG210900 Rh5CG234600 Rh5DG216200
rosa_wichuraiana Rw0G000920 Rw5G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 37, 90
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 3 cut(s) 44, 95, 105
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 192
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 124, 335
ApoI RAATTY 2 cut(s) 37, 90
ArsI GACNNNNNNTTYG 4 cut(s) 98, 130, 306, 338
AsuC2I CCSGG 3 cut(s) 7, 225, 226
AsuHPI GGTGA 2 cut(s) 12, 213
AvaI CYCGRG 1 cut(s) 224
BauI CACGAG 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 111, 322
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 215
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 3 cut(s) 7, 225, 226
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 2 cut(s) 125, 336
BlsI GCNGC 2 cut(s) 126, 337
Bme1390I CCNGG 3 cut(s) 7, 225, 226
BmeT110I CYCGRG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 3 cut(s) 7, 225, 226
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 3 cut(s) 7, 225, 226
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 6, 224
Bse118I RCCGGY 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 6, 224
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 111, 322
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 6, 23, 225
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 247, 330
BspANI GGCC 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 6, 224
BssMI GATC 2 cut(s) 247, 330
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
BstAFI CTTAAG 1 cut(s) 287
BstKTI GATC 2 cut(s) 250, 333
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 247, 330
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 5, 223, 224
BstV1I GCAGC 2 cut(s) 111, 322
BsuRI GGCC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 22
Cfr9I CCCGGG 1 cut(s) 224
CseI GACGC 1 cut(s) 324
CviAII CATG 1 cut(s) 306
CviJI RGCY 4 cut(s) 26, 124, 286, 310
CviKI_1 RGCY 4 cut(s) 26, 124, 286, 310
DpnI GATC 2 cut(s) 249, 332
DpnII GATC 2 cut(s) 247, 330
Eco31I GGTCTC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 90
FaeI CATG 1 cut(s) 309
FaiI YATR 4 cut(s) 168, 233, 307, 343
FatI CATG 1 cut(s) 305
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 125, 336
Fsp4HI GCNGC 2 cut(s) 125, 336
FspBI CTAG 1 cut(s) 312
GluI GCNGC 2 cut(s) 125, 336
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 310
HapII CCGG 3 cut(s) 6, 23, 225
HgaI GACGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 82, 218, 273
HpaII CCGG 3 cut(s) 6, 23, 225
HphI GGTGA 2 cut(s) 12, 213
Hpy188I TCNGA 3 cut(s) 64, 81, 118
Hpy188III TCNNGA 3 cut(s) 215, 254, 351
HpyAV CCTTC 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 330
LpnPI CCDG 5 cut(s) 19, 36, 106, 113, 238
Lsp1109I GCAGC 2 cut(s) 111, 322
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 312
MalI GATC 2 cut(s) 249, 332
MboI GATC 2 cut(s) 247, 330
MboII GAAGA 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 2 cut(s) 37, 90
MlyI GAGTC 2 cut(s) 91, 212
MnlI CCTC 3 cut(s) 43, 157, 201
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 3 cut(s) 6, 23, 225
MspR9I CCNGG 3 cut(s) 7, 225, 226
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 3 cut(s) 7, 225, 226
NdeII GATC 2 cut(s) 247, 330
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 2 cut(s) 126, 337
PleI GAGTC 2 cut(s) 90, 212
PpsI GAGTC 2 cut(s) 90, 212
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 125, 336
Sau3AI GATC 2 cut(s) 247, 330
SchI GAGTC 2 cut(s) 91, 212
ScrFI CCNGG 3 cut(s) 7, 225, 226
SduI GDGCHC 1 cut(s) 350
SetI ASST 2 cut(s) 16, 288
SfaNI GCATC 1 cut(s) 133
SmaI CCCGGG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 37, 90
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 3 cut(s) 5, 223, 224
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 37, 90
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 2 cut(s) 124, 335
TspDTI ATGAA 1 cut(s) 279
TspMI CCCGGG 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 287
XapI RAATTY 2 cut(s) 37, 90
XmaI CCCGGG 1 cut(s) 224
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.