Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0021123

Physical Location & Seq

Genomic Coordinates Forward (+)

38186663 .. 38188590

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1266500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCTAAGGGTCACGATTCAATATCGAATTCGAGGCAACCATTCTTCAAAATGGCGTCTCATATCTCTGTTGTGAAATCGGATGAAATTGTTCTCAAGCTTCAATCCTTCCACAACGAAAAGATTCAAGCCCGTGAGAAAAGAGATGAATTCTGGTCTCAATTTCGTCCAAGATACAAGCCCAAGACTCGTTCTGGTCTACGACCCATATTGAAGAAATTCAAGAAGGTGCATGACTACGGCAAATACCACAAAGATGATTCTACAAAGTTTCGTTCCAGTTCCAAATTTCAAGAAATTTTTGGGTTTTTTCGAAGTGAATTGGCTGGAAAGAATGCAAAGGTTTTCGATTTACTCGACAAGAAAGTTGAAGACCCTGTGAAAAGTCCTCCATTTCTTGATTCTGATTGCATGAAATCCAAGATTCAAGCTTGCGTTCTGGGTTCTTCATCTCCTAACGAATTGGTTGCTGCGTTTAGCGATAAATTCAATCAATTCAGGACGTCGACTTCGTCTAATCGGGAATTTCACTGCACGAACGACTTGGCCCAAGAATTCATTTTCATAATTTCCGTATCTGATGATGGGTTCGTGAAAATTGATTCACTTGCACTCCAAGTGTTTAATGAAAGGTCACACTCAGCAGATTGTGATTTTCAGTTGGGCTATCACATGCCGATTTCTGACACCGGAGGTACACTTTGTAGGTTCTTTACTTCGAATGTTCAAATTAAAGATGCTCATAGTTCTAAATTTCTTGTTTGTCATGGTGAAGTCATGAAAAATGCTACTATTGTGCATTTGAAGCTTGGTTTCCATGAGTTAATTCGTGACAAGGGTGGGACAATTAGCCAGAGGCTCTTTAATTCAAAGTCCAAGAATACAGATTGTGCTCGGGGTTTTGATTGTTCCACGGTGGTCAAACGTGAGGTAAGTTTTGATTCTTCCATGATCATTGATGGGGAGTATGCTGGTATTTTAGGATTGCATCATTTAGAAGCTTGTATGGACAAGAATAGAAAACATGAAAGCAAGTTCACTCTCTCCAGATTTGGAAATGGTTGCTGTATTGTTTGCTGTGTTGTTTGCCGTGTTGTTCTCAATCGTGACTATTGCAAGGGCATTCGGGATAAGGGTGGTGGCTCAAAATTCTGGTACAATGTCGCAATAAAGTGTGCAACTATCACTCCAGATGAAACTCGTGTTAAGGAGTTCCACTTGAAACAGATGTGGAGGAGTCCAAATGGGACCATACGGAACCATTTAAATGTTTTATTGCTGGTTTTCAATTGTACTTACTTCGAAATTGTAAATCTTACTTGTAAGATTGGTTTTAAGGGGGGGGTATTGTTAGGATGCCAGGTGGCATCATCTTGTGGTGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

463

Amino Acids

52.31

Weight (kDa)

9.14

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021123)

Species	Orthologous Gene IDs
malus_domestica	MD04G1082900.v1.1 MD10G1188900.v1.1 MD11G1266500.v1.1 MD13G1252100.v1.1
pyrus_communis	pycom17g05370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	506
AccI	GTMKAC	2 cut(s)	199, 506
AcyI	GRCGYC	2 cut(s)	56, 503
AfaI	GTAC	3 cut(s)	697, 1157, 1294
AjnI	CCWGG	1 cut(s)	1359
AluBI	AGCT	4 cut(s)	100, 431, 808, 1001
AluI	AGCT	4 cut(s)	100, 431, 808, 1001
Alw21I	GWGCWC	1 cut(s)	895
Alw26I	GTCTC	2 cut(s)	63, 162
Ama87I	CYCGRG	1 cut(s)	894
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
Asp700I	GAANNNNTTC	3 cut(s)	90, 123, 218
AspS9I	GGNCC	2 cut(s)	547, 1248
AsuHPI	GGTGA	1 cut(s)	782
AsuII	TTCGAA	3 cut(s)	313, 719, 1302
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	1 cut(s)	1248
BauI	CACGAG	1 cut(s)	1200
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	578, 953
BceAI	ACGGC	2 cut(s)	256, 1074
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	1 cut(s)	1361
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	2 cut(s)	63, 162
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	1361
Bme18I	GGWCC	1 cut(s)	1248
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	2 cut(s)	547, 1248
BmiI	GGNNCC	2 cut(s)	1249, 1259
BmrFI	CCNGG	1 cut(s)	1361
BmsI	GCATC	4 cut(s)	727, 997, 1346, 1376
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	2 cut(s)	1030, 1173
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	3 cut(s)	313, 719, 1302
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	56, 503
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	912
BsaWI	WCCGGW	1 cut(s)	689
BsaXI	ACNNNNNCTCC	4 cut(s)	597, 627, 1171, 1201
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	1361
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	2 cut(s)	88, 1361
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	1249
BseXI	GCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	895
BsiHKCI	CYCGRG	1 cut(s)	894
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	2 cut(s)	856, 1261
BsmAI	GTCTC	2 cut(s)	63, 162
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	2 cut(s)	856, 1261
BsmI	GAATGC	2 cut(s)	340, 1122
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	894
Bsp119I	TTCGAA	3 cut(s)	313, 719, 1302
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp143I	GATC	1 cut(s)	951
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	653
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	1249, 1259
BspT104I	TTCGAA	3 cut(s)	313, 719, 1302
BspTNI	GGTCTC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	1 cut(s)	951
BssNI	GRCGYC	2 cut(s)	56, 503
BssSI	CACGAG	1 cut(s)	1200
Bst2BI	CACGAG	1 cut(s)	1200
Bst2UI	CCWGG	1 cut(s)	1361
Bst4CI	ACNGT	1 cut(s)	916
BstACI	GRCGYC	2 cut(s)	56, 503
BstBI	TTCGAA	3 cut(s)	313, 719, 1302
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	6, 640
BstDSI	CCRYGG	1 cut(s)	912
BstF5I	GGATG	2 cut(s)	88, 1361
BstKTI	GATC	1 cut(s)	954
BstMAI	GTCTC	2 cut(s)	63, 162
BstMBI	GATC	1 cut(s)	951
BstMWI	GCNNNNNNNGC	1 cut(s)	805
BstNI	CCWGG	1 cut(s)	1361
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	1359
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	2 cut(s)	88, 1361
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	1 cut(s)	777
Cfr13I	GGNCC	2 cut(s)	547, 1248
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	696, 1156, 1293
CviAII	CATG	8 cut(s)	233, 412, 673, 767, 778, 818, 949, 1025
CviQI	GTAC	3 cut(s)	696, 1156, 1293
DdeI	CTNAG	2 cut(s)	6, 640
DpnI	GATC	1 cut(s)	953
DpnII	GATC	1 cut(s)	951
DraI	TTTAAA	1 cut(s)	1266
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	1248
Eco88I	CYCGRG	1 cut(s)	894
EcoRI	GAATTC	3 cut(s)	28, 149, 554
EcoRII	CCWGG	1 cut(s)	1359
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	8 cut(s)	236, 415, 676, 770, 781, 821, 952, 1028
FaqI	GGGAC	2 cut(s)	856, 1261
FatI	CATG	8 cut(s)	232, 411, 672, 766, 777, 817, 948, 1024
FbaI	TGATCA	1 cut(s)	951
FblI	GTMKAC	2 cut(s)	199, 506
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	95, 1368
Fsp4HI	GCNGC	1 cut(s)	471
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	2 cut(s)	1030, 1173
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	690
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	2 cut(s)	56, 503
Hin1II	CATG	8 cut(s)	236, 415, 676, 770, 781, 821, 952, 1028
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	4 cut(s)	98, 429, 806, 999
HinfI	GANTC	9 cut(s)	17, 124, 187, 260, 401, 424, 602, 941, 1237
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	4 cut(s)	200, 507, 698, 1038
Hpy188I	TCNGA	4 cut(s)	82, 406, 580, 685
Hpy8I	GTNNAC	4 cut(s)	200, 507, 698, 1038
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	2 cut(s)	118, 220
HpyCH4III	ACNGT	1 cut(s)	916
HpyCH4IV	ACGT	2 cut(s)	503, 925
HpyCH4V	TGCA	9 cut(s)	232, 338, 411, 534, 611, 799, 988, 1116, 1178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	805
HpyF3I	CTNAG	2 cut(s)	6, 640
HpySE526I	ACGT	2 cut(s)	503, 925
Hsp92I	GRCGYC	2 cut(s)	56, 503
Hsp92II	CATG	8 cut(s)	236, 415, 676, 770, 781, 821, 952, 1028
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	1 cut(s)	951
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	4 cut(s)	727, 997, 1346, 1376
MaeII	ACGT	2 cut(s)	503, 925
MaeIII	GTNAC	5 cut(s)	11, 633, 830, 1106, 1379
MalI	GATC	1 cut(s)	953
MboI	GATC	1 cut(s)	951
MboII	GAAGA	5 cut(s)	37, 226, 383, 438, 936
MfeI	CAATTG	1 cut(s)	1288
MhlI	GDGCHC	1 cut(s)	895
MlyI	GAGTC	2 cut(s)	181, 1246
MnlI	CCTC	6 cut(s)	27, 399, 686, 849, 922, 1227
MroXI	GAANNNNTTC	3 cut(s)	90, 123, 218
MseI	TTAA	7 cut(s)	624, 732, 824, 864, 1206, 1265, 1335
MslI	CAYNNNNRTG	2 cut(s)	255, 1266
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	1361
MunI	CAATTG	1 cut(s)	1288
Mva1269I	GAATGC	2 cut(s)	340, 1122
MvaI	CCWGG	1 cut(s)	1361
MwoI	GCNNNNNNNGC	1 cut(s)	805
NdeII	GATC	1 cut(s)	951
NlaIII	CATG	8 cut(s)	236, 415, 676, 770, 781, 821, 952, 1028
NlaIV	GGNNCC	2 cut(s)	1249, 1259
NmuCI	GTSAC	5 cut(s)	11, 633, 830, 1106, 1379
NspI	RCATGY	1 cut(s)	676
NspV	TTCGAA	3 cut(s)	313, 719, 1302
PagI	TCATGA	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 509
PctI	GAATGC	2 cut(s)	340, 1122
PdmI	GAANNNNTTC	3 cut(s)	90, 123, 218
PfeI	GAWTC	7 cut(s)	17, 124, 260, 401, 424, 602, 941
PflFI	GACNNNGTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	2 cut(s)	181, 1245
PpsI	GAGTC	2 cut(s)	181, 1245
Psp6I	CCWGG	1 cut(s)	1359
PspGI	CCWGG	1 cut(s)	1359
PspN4I	GGNNCC	2 cut(s)	1249, 1259
PspPI	GGNCC	2 cut(s)	547, 1248
PsyI	GACNNNGTC	1 cut(s)	511
RsaI	GTAC	3 cut(s)	697, 1157, 1294
RsaNI	GTAC	3 cut(s)	696, 1156, 1293
RseI	CAYNNNNRTG	2 cut(s)	255, 1266
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	7 cut(s)	624, 732, 824, 864, 1206, 1265, 1335
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	1 cut(s)	951
Sau96I	GGNCC	2 cut(s)	547, 1248
SchI	GAGTC	2 cut(s)	181, 1246
ScrFI	CCNGG	1 cut(s)	1361
SduI	GDGCHC	1 cut(s)	895
SfaNI	GCATC	4 cut(s)	727, 997, 1346, 1376
SfuI	TTCGAA	3 cut(s)	313, 719, 1302
SinI	GGWCC	1 cut(s)	1248
SmiI	ATTTAAAT	1 cut(s)	1266
SmiMI	CAYNNNNRTG	2 cut(s)	255, 1266
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	1359
SwaI	ATTTAAAT	1 cut(s)	1266
TaaI	ACNGT	1 cut(s)	916
TaiI	ACGT	2 cut(s)	506, 928
TaqI	TCGA	8 cut(s)	26, 32, 313, 348, 357, 506, 719, 1302
TatI	WGTACW	1 cut(s)	1292
TfiI	GAWTC	7 cut(s)	17, 124, 260, 401, 424, 602, 941
Tru1I	TTAA	7 cut(s)	624, 732, 824, 864, 1206, 1265, 1335
Tru9I	TTAA	7 cut(s)	624, 732, 824, 864, 1206, 1265, 1335
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	5 cut(s)	11, 633, 830, 1106, 1379
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	5 cut(s)	11, 633, 830, 1106, 1379
TspGWI	ACGGA	2 cut(s)	562, 1270
TspRI	CASTG	1 cut(s)	536
Tth111I	GACNNNGTC	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	1248
XceI	RCATGY	1 cut(s)	676
XmiI	GTMKAC	2 cut(s)	199, 506
XmnI	GAANNNNTTC	3 cut(s)	90, 123, 218
ZraI	GACGTC	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.