Belongs to the isocitrate and isopropylmalate dehydrogenases family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD04G1082900.v1.1 MD10G1188900.v1.1 MD11G1266500.v1.1 MD13G1252100.v1.1 |
| pyrus_communis | pycom17g05370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 909 |
| AatII | GACGTC | 1 cut(s) | 455 |
| AccII | CGCG | 1 cut(s) | 183 |
| AciI | CCGC | 1 cut(s) | 1742 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AcyI | GRCGYC | 2 cut(s) | 5, 452 |
| AfaI | GTAC | 3 cut(s) | 113, 739, 1089 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 899 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1335, 1367 |
| AluBI | AGCT | 5 cut(s) | 380, 757, 1073, 1242, 1504 |
| AluI | AGCT | 5 cut(s) | 380, 757, 1073, 1242, 1504 |
| Alw21I | GWGCWC | 1 cut(s) | 855 |
| Alw26I | GTCTC | 6 cut(s) | 12, 111, 1091, 1367, 1581, 1653 |
| Alw44I | GTGCAC | 1 cut(s) | 851 |
| AoxI | GGCC | 2 cut(s) | 78, 495 |
| ApaLI | GTGCAC | 1 cut(s) | 851 |
| ApeKI | GCWGC | 3 cut(s) | 419, 889, 1623 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 442, 474 |
| AseI | ATTAAT | 1 cut(s) | 1386 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 39, 72 |
| AspLEI | GCGC | 1 cut(s) | 1173 |
| AspS9I | GGNCC | 2 cut(s) | 79, 496 |
| AsuHPI | GGTGA | 7 cut(s) | 553, 731, 934, 1352, 1367, 1472, 1682 |
| AsuII | TTCGAA | 3 cut(s) | 262, 668, 818 |
| AxyI | CCTNAGG | 1 cut(s) | 1730 |
| BaeGI | GKGCMC | 1 cut(s) | 855 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 729, 762 |
| Bbv12I | GWGCWC | 1 cut(s) | 855 |
| BbvI | GCAGC | 3 cut(s) | 406, 901, 1635 |
| BccI | CCATC | 5 cut(s) | 57, 200, 527, 1370, 1550 |
| BclI | TGATCA | 1 cut(s) | 330 |
| BcoDI | GTCTC | 6 cut(s) | 12, 111, 1091, 1367, 1581, 1653 |
| BfmI | CTRYAG | 1 cut(s) | 887 |
| BisI | GCNGC | 3 cut(s) | 420, 890, 1624 |
| BlpI | GCTNAGC | 1 cut(s) | 1229 |
| BlsI | GCNGC | 3 cut(s) | 421, 891, 1625 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 496 |
| BmiI | GGNNCC | 1 cut(s) | 1206 |
| BmsI | GCATC | 4 cut(s) | 676, 871, 904, 1215 |
| BpmI | CTGGAG | 2 cut(s) | 324, 1709 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1229 |
| Bpu14I | TTCGAA | 3 cut(s) | 262, 668, 818 |
| BpuEI | CTTGAG | 1 cut(s) | 1126 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 452 |
| BsaJI | CCNNGG | 1 cut(s) | 1306 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 546, 576, 1650, 1680 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 899 |
| Bse1I | ACTGG | 3 cut(s) | 341, 832, 1181 |
| Bse21I | CCTNAGG | 1 cut(s) | 1730 |
| Bse3DI | GCAATG | 2 cut(s) | 1318, 1633 |
| BseDI | CCNNGG | 1 cut(s) | 1306 |
| BseGI | GGATG | 3 cut(s) | 37, 1230, 1513 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 899 |
| BseMI | GCAATG | 2 cut(s) | 1318, 1633 |
| BseMII | CTCAG | 4 cut(s) | 122, 603, 1220, 1284 |
| BseNI | ACTGG | 3 cut(s) | 341, 832, 1181 |
| BseRI | GAGGAG | 1 cut(s) | 1069 |
| BseSI | GKGCMC | 1 cut(s) | 855 |
| BseXI | GCAGC | 3 cut(s) | 406, 901, 1635 |
| BseYI | CCCAGC | 1 cut(s) | 275 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| BshFI | GGCC | 2 cut(s) | 80, 497 |
| BsiHKAI | GWGCWC | 1 cut(s) | 855 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 899 |
| BsmAI | GTCTC | 6 cut(s) | 12, 111, 1091, 1367, 1581, 1653 |
| BsmBI | CGTCTC | 3 cut(s) | 12, 1091, 1367 |
| BsmI | GAATGC | 2 cut(s) | 1185, 1429 |
| BsnI | GGCC | 2 cut(s) | 80, 497 |
| Bsp119I | TTCGAA | 3 cut(s) | 262, 668, 818 |
| Bsp1286I | GDGCHC | 1 cut(s) | 855 |
| Bsp143I | GATC | 3 cut(s) | 330, 439, 1462 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1229 |
| Bsp19I | CCATGG | 1 cut(s) | 1306 |
| Bsp68I | TCGCGA | 1 cut(s) | 183 |
| BspACI | CCGC | 1 cut(s) | 1742 |
| BspANI | GGCC | 2 cut(s) | 80, 497 |
| BspCNI | CTCAG | 4 cut(s) | 121, 602, 1221, 1283 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspHI | TCATGA | 1 cut(s) | 726 |
| BspLI | GGNNCC | 1 cut(s) | 1206 |
| BspMAI | CTGCAG | 1 cut(s) | 891 |
| BspT104I | TTCGAA | 3 cut(s) | 262, 668, 818 |
| BsrDI | GCAATG | 2 cut(s) | 1318, 1633 |
| BsrI | ACTGG | 3 cut(s) | 341, 832, 1181 |
| BssECI | CCNNGG | 1 cut(s) | 1306 |
| BssMI | GATC | 3 cut(s) | 330, 439, 1462 |
| BssNI | GRCGYC | 2 cut(s) | 5, 452 |
| BssT1I | CCWWGG | 1 cut(s) | 1306 |
| Bst4CI | ACNGT | 4 cut(s) | 116, 876, 1451, 1648 |
| BstACI | GRCGYC | 2 cut(s) | 5, 452 |
| BstBI | TTCGAA | 3 cut(s) | 262, 668, 818 |
| BstC8I | GCNNGC | 2 cut(s) | 382, 1515 |
| BstDEI | CTNAG | 6 cut(s) | 108, 589, 1012, 1229, 1270, 1730 |
| BstDSI | CCRYGG | 1 cut(s) | 1306 |
| BstF5I | GGATG | 3 cut(s) | 37, 1230, 1513 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstHHI | GCGC | 1 cut(s) | 1173 |
| BstKTI | GATC | 3 cut(s) | 333, 442, 1465 |
| BstMAI | GTCTC | 6 cut(s) | 12, 111, 1091, 1367, 1581, 1653 |
| BstMBI | GATC | 3 cut(s) | 330, 439, 1462 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 754, 1170, 1239, 1510 |
| BstNSI | RCATGY | 2 cut(s) | 625, 1171 |
| BstSFI | CTRYAG | 1 cut(s) | 887 |
| BstSLI | GKGCMC | 1 cut(s) | 855 |
| BstUI | CGCG | 1 cut(s) | 183 |
| BstV1I | GCAGC | 3 cut(s) | 406, 901, 1635 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 206 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1730 |
| BsuRI | GGCC | 2 cut(s) | 80, 497 |
| BtgI | CCRYGG | 1 cut(s) | 1306 |
| BtsCI | GGATG | 3 cut(s) | 37, 1230, 1513 |
| BtsI | GCAGTG | 1 cut(s) | 884 |
| BtsIMutI | CAGTG | 1 cut(s) | 884 |
| BtuMI | TCGCGA | 1 cut(s) | 183 |
| Cac8I | GCNNGC | 2 cut(s) | 382, 1515 |
| CciI | TCATGA | 1 cut(s) | 726 |
| CfoI | GCGC | 1 cut(s) | 1173 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 496 |
| Csp6I | GTAC | 3 cut(s) | 112, 738, 1088 |
| CviAII | CATG | 7 cut(s) | 361, 622, 727, 767, 1168, 1307, 1436 |
| CviQI | GTAC | 3 cut(s) | 112, 738, 1088 |
| DdeI | CTNAG | 6 cut(s) | 108, 589, 1012, 1229, 1270, 1730 |
| DpnI | GATC | 3 cut(s) | 332, 441, 1464 |
| DpnII | GATC | 3 cut(s) | 330, 439, 1462 |
| EciI | GGCGGA | 1 cut(s) | 1757 |
| Eco130I | CCWWGG | 1 cut(s) | 1306 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| Eco81I | CCTNAGG | 1 cut(s) | 1730 |
| EcoRI | GAATTC | 5 cut(s) | 98, 503, 957, 992, 1007 |
| EcoT14I | CCWWGG | 1 cut(s) | 1306 |
| ErhI | CCWWGG | 1 cut(s) | 1306 |
| Esp3I | CGTCTC | 3 cut(s) | 12, 1091, 1367 |
| FaeI | CATG | 7 cut(s) | 364, 625, 730, 770, 1171, 1310, 1439 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 127, 159, 476, 508, 633, 665 |
| FatI | CATG | 7 cut(s) | 360, 621, 726, 766, 1167, 1306, 1435 |
| FbaI | TGATCA | 1 cut(s) | 330 |
| Fnu4HI | GCNGC | 3 cut(s) | 420, 890, 1624 |
| FokI | GGATG | 3 cut(s) | 44, 1237, 1520 |
| Fsp4HI | GCNGC | 3 cut(s) | 420, 890, 1624 |
| GlaI | GCGC | 1 cut(s) | 1172 |
| GluI | GCNGC | 3 cut(s) | 420, 890, 1624 |
| GsaI | CCCAGC | 1 cut(s) | 279 |
| GsuI | CTGGAG | 2 cut(s) | 324, 1709 |
| HaeIII | GGCC | 2 cut(s) | 80, 497 |
| HhaI | GCGC | 1 cut(s) | 1173 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 452 |
| Hin1II | CATG | 7 cut(s) | 364, 625, 730, 770, 1171, 1310, 1439 |
| Hin6I | GCGC | 1 cut(s) | 1171 |
| HinP1I | GCGC | 1 cut(s) | 1171 |
| HincII | GTYRAC | 1 cut(s) | 1267 |
| HindII | GTYRAC | 1 cut(s) | 1267 |
| HindIII | AAGCTT | 2 cut(s) | 378, 755 |
| HphI | GGTGA | 7 cut(s) | 553, 731, 934, 1352, 1367, 1472, 1682 |
| Hpy166II | GTNNAC | 5 cut(s) | 853, 942, 1267, 1358, 1527 |
| Hpy188I | TCNGA | 6 cut(s) | 31, 355, 529, 634, 991, 1273 |
| Hpy8I | GTNNAC | 5 cut(s) | 853, 942, 1267, 1358, 1527 |
| Hpy99I | CGWCG | 1 cut(s) | 457 |
| HpyAV | CCTTC | 4 cut(s) | 67, 1174, 1215, 1561 |
| HpyCH4III | ACNGT | 4 cut(s) | 116, 876, 1451, 1648 |
| HpyCH4IV | ACGT | 2 cut(s) | 452, 1360 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 754, 1170, 1239, 1510 |
| HpyF3I | CTNAG | 6 cut(s) | 108, 589, 1012, 1229, 1270, 1730 |
| HpySE526I | ACGT | 2 cut(s) | 452, 1360 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 452 |
| Hsp92II | CATG | 7 cut(s) | 364, 625, 730, 770, 1171, 1310, 1439 |
| HspAI | GCGC | 1 cut(s) | 1171 |
| Ksp22I | TGATCA | 1 cut(s) | 330 |
| Kzo9I | GATC | 3 cut(s) | 330, 439, 1462 |
| LmnI | GCTCC | 2 cut(s) | 813, 1210 |
| Lsp1109I | GCAGC | 3 cut(s) | 406, 901, 1635 |
| LweI | GCATC | 4 cut(s) | 676, 871, 904, 1215 |
| MaeII | ACGT | 2 cut(s) | 452, 1360 |
| MaeIII | GTNAC | 2 cut(s) | 582, 643 |
| MalI | GATC | 3 cut(s) | 332, 441, 1464 |
| MboI | GATC | 3 cut(s) | 330, 439, 1462 |
| MboII | GAAGA | 7 cut(s) | 175, 215, 292, 332, 387, 1361, 1384 |
| MfeI | CAATTG | 2 cut(s) | 918, 1159 |
| MhlI | GDGCHC | 1 cut(s) | 855 |
| MlyI | GAGTC | 3 cut(s) | 1262, 1583, 1655 |
| MnlI | CCTC | 7 cut(s) | 150, 168, 1047, 1195, 1229, 1330, 1684 |
| MroXI | GAANNNNTTC | 2 cut(s) | 39, 72 |
| MslI | CAYNNNNRTG | 3 cut(s) | 204, 848, 858 |
| MunI | CAATTG | 2 cut(s) | 918, 1159 |
| Mva1269I | GAATGC | 2 cut(s) | 1185, 1429 |
| MvnI | CGCG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 754, 1170, 1239, 1510 |
| NcoI | CCATGG | 1 cut(s) | 1306 |
| NdeII | GATC | 3 cut(s) | 330, 439, 1462 |
| NlaIII | CATG | 7 cut(s) | 364, 625, 730, 770, 1171, 1310, 1439 |
| NlaIV | GGNNCC | 1 cut(s) | 1206 |
| NmuCI | GTSAC | 1 cut(s) | 582 |
| NruI | TCGCGA | 1 cut(s) | 183 |
| NspI | RCATGY | 2 cut(s) | 625, 1171 |
| NspV | TTCGAA | 3 cut(s) | 262, 668, 818 |
| PagI | TCATGA | 1 cut(s) | 726 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 303, 461 |
| PctI | GAATGC | 2 cut(s) | 1185, 1429 |
| PdmI | GAANNNNTTC | 2 cut(s) | 39, 72 |
| PfeI | GAWTC | 9 cut(s) | 73, 323, 350, 373, 466, 473, 551, 1538, 1704 |
| PkrI | GCNGC | 3 cut(s) | 421, 891, 1625 |
| PleI | GAGTC | 3 cut(s) | 1262, 1582, 1655 |
| PpsI | GAGTC | 3 cut(s) | 1262, 1582, 1655 |
| PshBI | ATTAAT | 1 cut(s) | 1386 |
| PsiI | TTATAA | 1 cut(s) | 909 |
| PspFI | CCCAGC | 1 cut(s) | 275 |
| PspN4I | GGNNCC | 1 cut(s) | 1206 |
| PspPI | GGNCC | 2 cut(s) | 79, 496 |
| PstI | CTGCAG | 1 cut(s) | 891 |
| RruI | TCGCGA | 1 cut(s) | 183 |
| RsaI | GTAC | 3 cut(s) | 113, 739, 1089 |
| RsaNI | GTAC | 3 cut(s) | 112, 738, 1088 |
| RseI | CAYNNNNRTG | 3 cut(s) | 204, 848, 858 |
| SatI | GCNGC | 3 cut(s) | 420, 890, 1624 |
| Sau3AI | GATC | 3 cut(s) | 330, 439, 1462 |
| Sau96I | GGNCC | 2 cut(s) | 79, 496 |
| SchI | GAGTC | 3 cut(s) | 1262, 1583, 1655 |
| SduI | GDGCHC | 1 cut(s) | 855 |
| SfaNI | GCATC | 4 cut(s) | 676, 871, 904, 1215 |
| SfcI | CTRYAG | 1 cut(s) | 887 |
| SfuI | TTCGAA | 3 cut(s) | 262, 668, 818 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 204, 848, 858 |
| SmlI | CTYRAG | 1 cut(s) | 1141 |
| SmoI | CTYRAG | 1 cut(s) | 1141 |
| SsiI | CCGC | 1 cut(s) | 1742 |
| SspI | AATATT | 1 cut(s) | 1558 |
| StyI | CCWWGG | 1 cut(s) | 1306 |
| TaaI | ACNGT | 4 cut(s) | 116, 876, 1451, 1648 |
| TaiI | ACGT | 2 cut(s) | 455, 1363 |
| TaqI | TCGA | 7 cut(s) | 262, 297, 306, 438, 464, 668, 818 |
| TfiI | GAWTC | 9 cut(s) | 73, 323, 350, 373, 466, 473, 551, 1538, 1704 |
| TscAI | CASTG | 1 cut(s) | 891 |
| TseFI | GTSAC | 1 cut(s) | 582 |
| TseI | GCWGC | 3 cut(s) | 419, 889, 1623 |
| Tsp45I | GTSAC | 1 cut(s) | 582 |
| TspGWI | ACGGA | 1 cut(s) | 423 |
| TspRI | CASTG | 1 cut(s) | 891 |
| VneI | GTGCAC | 1 cut(s) | 851 |
| VspI | ATTAAT | 1 cut(s) | 1386 |
| XceI | RCATGY | 2 cut(s) | 625, 1171 |
| XmnI | GAANNNNTTC | 2 cut(s) | 39, 72 |
| ZraI | GACGTC | 1 cut(s) | 453 |