MD11G1279100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0021206
Physical Location & Seq
Reverse (-)
39677784 .. 39678093
310 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1279100.v1.1.491

Sequence Viewer

Length: 225 bp
ATGCTCGACGAAATAGAGTTTTTGGTTACGCATTGGGATGCAGAAGGCCGCACAGTGGAGCAAGTGGCTTTTGAAGCTTATGGTCTTGTTCATTCGACAGGCTGTGTGGTCGAGTTTATGGTGATGGGGTGGGACTATACCAGTCCCCACTCCAAGTATACATTGCGGTTTCATCGGAATTGCTCATTAGGATTGACGTTGCGGCAACTATGGGCTCTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

5.14

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021206)

Species Orthologous Gene IDs
malus_domestica MD11G1279100.v1.1 MD11G1285600.v1.1 MD11G1285800.v1.1 MD11G1285900.v1.1
pyrus_communis pycom11g25320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 158
AciI CCGC 3 cut(s) 49, 166, 202
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AoxI GGCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 133
BanII GRGCYC 1 cut(s) 217
BccI CCATC 1 cut(s) 118
BfaI CTAG 1 cut(s) 218
BisI GCNGC 2 cut(s) 49, 203
BlsI GCNGC 2 cut(s) 50, 204
BmsI GCATC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 161
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 141
BshFI GGCC 1 cut(s) 48
BslFI GGGAC 2 cut(s) 129, 146
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 129, 146
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 217
BspACI CCGC 3 cut(s) 49, 166, 202
BspANI GGCC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 141
BssNAI GTATAC 1 cut(s) 159
Bst1107I GTATAC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 55
BstF5I GGATG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 60
CviJI RGCY 5 cut(s) 48, 68, 77, 102, 215
CviKI_1 RGCY 5 cut(s) 48, 68, 77, 102, 215
Eco24I GRGCYC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 217
FaiI YATR 5 cut(s) 81, 119, 138, 159, 211
FaqI GGGAC 2 cut(s) 129, 146
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 49, 203
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 49, 203
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 49, 203
HaeIII GGCC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 75
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 197
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 2 cut(s) 84, 154
LweI GCATC 1 cut(s) 28
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 178
MseI TTAA 1 cut(s) 223
MslI CAYNNNNRTG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 50, 204
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 223
SatI GCNGC 2 cut(s) 49, 203
SduI GDGCHC 1 cut(s) 217
SetI ASST 2 cut(s) 79, 200
SfaNI GCATC 1 cut(s) 28
SgeI CNNG 7 cut(s) 17, 74, 98, 111, 124, 153, 166
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 1 cut(s) 178
SsiI CCGC 3 cut(s) 49, 166, 202
SspMI CTAG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 6, 95, 111
TasI AATT 1 cut(s) 178
TauI GCSGC 2 cut(s) 51, 205
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TscAI CASTG 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 80, 161
TspRI CASTG 1 cut(s) 60
XbaI TCTAGA 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.