MD11G1285800.v1.1

cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0021206
Physical Location & Seq
Reverse (-)
40445632 .. 40446561
930 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1285800.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGCTGGATTTAGGATGGCTTGGGAGGAACTGTGGCAATGGATGACATCAGTGTTTCTTAGAATACCTGAGGAGTCGCACACGGTGGAGCTAGCGGCTAATCTAGCCTATCATTTTGTTAGTCCCTACGGCATAGTTCACAGCCTTGTTTTGGGATGGGACTTTACAAGTCCACATCCGCAAATGTTTCGAGTGATCCCAGGTATATCACTTACGAGTGATAGTGCTATGGCTGTTGGGTCAGGAGAAGAACATATAAATCTGCGGGATCTGACATACTATAATTATGGGGAATTAGCACATGCCTTCCACAATACAATGTTGCTACTCAAGCAAGCATGCCTTTTAGATCCTTTTTGTGGTGGAATTGTTATAGGACGGGTACTGCAGAGAAATCAACCACCATCCTGCCAGTATCTTAACTTCTTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
STAG

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

5.71

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021206)

Species Orthologous Gene IDs
malus_domestica MD11G1279100.v1.1 MD11G1285600.v1.1 MD11G1285800.v1.1 MD11G1285900.v1.1
pyrus_communis pycom11g25320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 95, 179, 265
AclWI GGATC 3 cut(s) 190, 276, 344
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 2 cut(s) 151, 359
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AlwI GGATC 3 cut(s) 190, 276, 344
AsuNHI GCTAGC 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 69
BarI GAAGNNNNNNTAC 1 cut(s) 407
BccI CCATC 3 cut(s) 10, 150, 412
BceAI ACGGC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 201
BfaI CTAG 2 cut(s) 92, 104
BfmI CTRYAG 1 cut(s) 386
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 201
BmtI GCTAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 359
Bse1I ACTGG 1 cut(s) 412
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 5 cut(s) 21, 48, 161, 175, 404
BseLI CCNNNNNNNGG 2 cut(s) 151, 359
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 86
BslFI GGGAC 2 cut(s) 108, 173
BslI CCNNNNNNNGG 2 cut(s) 151, 359
BsmFI GGGAC 2 cut(s) 108, 173
Bsp143I GATC 3 cut(s) 195, 268, 349
BspACI CCGC 3 cut(s) 95, 179, 265
BspCNI CTCAG 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 390
BspOI GCTAGC 1 cut(s) 95
BspPI GGATC 3 cut(s) 190, 276, 344
BsrDI GCAATG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 195, 268, 349
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 33, 85
BstC8I GCNNGC 3 cut(s) 93, 336, 340
BstDEI CTNAG 2 cut(s) 59, 69
BstF5I GGATG 5 cut(s) 21, 48, 161, 175, 404
BstKTI GATC 3 cut(s) 198, 271, 352
BstMBI GATC 3 cut(s) 195, 268, 349
BstMWI GCNNNNNNNGC 2 cut(s) 104, 331
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 2 cut(s) 305, 342
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 268, 349
BstYI RGATCY 2 cut(s) 268, 349
Bsu36I CCTNAGG 1 cut(s) 69
BtsCI GGATG 5 cut(s) 21, 48, 161, 175, 404
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 93, 336, 340
Csp6I GTAC 1 cut(s) 383
CviAII CATG 2 cut(s) 302, 339
CviJI RGCY 7 cut(s) 5, 20, 91, 98, 107, 144, 233
CviKI_1 RGCY 7 cut(s) 5, 20, 91, 98, 107, 144, 233
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 2 cut(s) 59, 69
DpnI GATC 3 cut(s) 197, 270, 351
DpnII GATC 3 cut(s) 195, 268, 349
DraIII CACNNNGTG 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 305, 342
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 2 cut(s) 108, 173
FatI CATG 2 cut(s) 301, 338
FauI CCCGC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 5 cut(s) 28, 55, 162, 168, 391
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 92, 104
GluI GCNGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 305, 342
HinfI GANTC 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 139, 173
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 2 cut(s) 139, 173
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 33, 85
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 331
HpyF3I CTNAG 2 cut(s) 59, 69
Hsp92II CATG 2 cut(s) 305, 342
Kzo9I GATC 3 cut(s) 195, 268, 349
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 81, 186, 213, 228, 421, 425
MaeI CTAG 2 cut(s) 92, 104
MalI GATC 3 cut(s) 197, 270, 351
MboI GATC 3 cut(s) 195, 268, 349
MboII GAAGA 2 cut(s) 260, 418
MflI RGATCY 2 cut(s) 268, 349
MluCI AATT 3 cut(s) 283, 293, 366
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 2 cut(s) 19, 64
MseI TTAA 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 104, 331
NdeII GATC 3 cut(s) 195, 268, 349
NheI GCTAGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 305, 342
NspI RCATGY 2 cut(s) 305, 342
PaeI GCATGC 1 cut(s) 342
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PstI CTGCAG 1 cut(s) 390
PsuI RGATCY 2 cut(s) 268, 349
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 195, 268, 349
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 201
SetI ASST 3 cut(s) 70, 93, 205
SfcI CTRYAG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SphI GCATGC 1 cut(s) 342
Sse9I AATT 3 cut(s) 283, 293, 366
SsiI CCGC 3 cut(s) 95, 179, 265
SspMI CTAG 2 cut(s) 92, 104
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 2 cut(s) 33, 85
TaqI TCGA 1 cut(s) 190
TasI AATT 3 cut(s) 283, 293, 366
TauI GCSGC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 57
TspRI CASTG 1 cut(s) 57
XceI RCATGY 2 cut(s) 305, 342
XspI CTAG 2 cut(s) 92, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.