MD11G1285600.v1.1

cohesion protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
40419012 .. 40420170
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1285600.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGCTGGATATAGGATGGATTGGGAGGAAATGTGGAAATGGATGACATCAGTGTTTCTAACAATACCTGAGGAGTCGCGCACGGTGAAGTTAGCGGCTAATCTAGCCTATCATTTTGTTAGTCCCTACGTCACAGTTTCCAGCCTTGTTTTGGGATGGGACTTTACAAGTCCACATCCGCAAATGTTTCGAGTGATCTCACGTACATCACTTACGAGTGATAGTGCTATGGCTGTTGGGTCAGGAGAAGAACATATAAATCTGCGGTATCTGACAGACTATAATTATGGGGAATTAGCACATGCCTTCCGCAATACAATGTCGCTACTCAACCAAGCCTGCCTTTTAGATCCTTTTTGTGGTGGAGTTGTTATAGGACGGGTACTGCAGAGAAATCAACCACCATCCTGCCAGTATCTTAGCTTCTTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.41

Weight (kDa)

6.04

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021206)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 79
AciI CCGC 4 cut(s) 95, 179, 265, 310
AclWI GGATC 1 cut(s) 344
AfaI GTAC 2 cut(s) 205, 384
AfiI CCNNNNNNNGG 2 cut(s) 151, 359
AluBI AGCT 1 cut(s) 423
AluI AGCT 1 cut(s) 423
AlwI GGATC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 69
BarI GAAGNNNNNNTAC 1 cut(s) 407
BccI CCATC 3 cut(s) 10, 150, 412
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 386
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 359
Bse1I ACTGG 1 cut(s) 412
Bse21I CCTNAGG 1 cut(s) 69
BseGI GGATG 5 cut(s) 21, 48, 161, 175, 404
BseLI CCNNNNNNNGG 2 cut(s) 151, 359
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 79
BslFI GGGAC 2 cut(s) 108, 173
BslI CCNNNNNNNGG 2 cut(s) 151, 359
BsmFI GGGAC 2 cut(s) 108, 173
Bsp143I GATC 2 cut(s) 195, 349
BspACI CCGC 4 cut(s) 95, 179, 265, 310
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 390
BspPI GGATC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 412
BssMI GATC 2 cut(s) 195, 349
Bst4CI ACNGT 2 cut(s) 85, 136
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 69, 419, 432
BstF5I GGATG 5 cut(s) 21, 48, 161, 175, 404
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 198, 352
BstMBI GATC 2 cut(s) 195, 349
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu36I CCTNAGG 1 cut(s) 69
BtsCI GGATG 5 cut(s) 21, 48, 161, 175, 404
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 204, 383
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 5, 98, 107, 144, 233, 338, 423
CviKI_1 RGCY 7 cut(s) 5, 98, 107, 144, 233, 338, 423
CviQI GTAC 2 cut(s) 204, 383
DdeI CTNAG 3 cut(s) 69, 419, 432
DpnI GATC 2 cut(s) 197, 351
DpnII GATC 2 cut(s) 195, 349
Eco81I CCTNAGG 1 cut(s) 69
FaeI CATG 1 cut(s) 305
FaiI YATR 8 cut(s) 12, 230, 255, 257, 282, 288, 303, 374
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 2 cut(s) 108, 173
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 5 cut(s) 28, 55, 162, 168, 391
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 85, 136
HpyCH4IV ACGT 2 cut(s) 129, 202
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 3 cut(s) 69, 419, 432
HpySE526I ACGT 2 cut(s) 129, 202
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 195, 349
LpnPI CCDG 6 cut(s) 81, 154, 228, 352, 421, 425
MaeI CTAG 1 cut(s) 104
MaeII ACGT 2 cut(s) 129, 202
MaeIII GTNAC 1 cut(s) 130
MalI GATC 2 cut(s) 197, 351
MboI GATC 2 cut(s) 195, 349
MboII GAAGA 2 cut(s) 260, 418
MflI RGATCY 1 cut(s) 349
MluCI AATT 2 cut(s) 283, 293
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 2 cut(s) 19, 64
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 195, 349
NlaIII CATG 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 305
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 203
PstI CTGCAG 1 cut(s) 390
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 2 cut(s) 205, 384
RsaNI GTAC 2 cut(s) 204, 383
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 195, 349
SchI GAGTC 1 cut(s) 83
SetI ASST 4 cut(s) 70, 132, 205, 425
SfcI CTRYAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 283, 293
SsiI CCGC 4 cut(s) 95, 179, 265, 310
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 85, 136
TaiI ACGT 2 cut(s) 132, 205
TaqI TCGA 1 cut(s) 190
TasI AATT 2 cut(s) 283, 293
TauI GCSGC 1 cut(s) 98
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspRI CASTG 1 cut(s) 57
XceI RCATGY 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.