pycom11g25320

cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0021206
Physical Location & Seq
Reverse (-)
28128134 .. 28129328
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25320.5

Sequence Viewer

Length: 780 bp
ATGGATTATATAACTGCATTGTCACGCAGTCCAAGAACTTATCGTCAAGCTGCTACTTGGAGGGCTCTGCAACTGATCACATCATTTATATCTGCTGCCAACACACTTGCTACCAGGCGAGAAACTACTCGTATACAATTAAATGCTGAAAAAAAGATTGAAACTGAGGGACCTCGTGTGGAATCACTGAACAAGAGGCTCTCAATGACTCACGACAAGATAACTACATTAGAGCAGATGATGTGCAAGATATCAAAAGGACACCAGCTTCTACCACCAGAGATCAGGCATGTGGTAAGAGCATTAGAGTATGAACACTTGATTGCTAAGGAGTCCAATGGCTCCCAACCTGGTGCAAAAGGTTTTTCATGCTATGAACATGGCACCATTAATATTGCTTACCGTTGGGGAAATTTTATTTGTGTTGGAGTTGATTCAAAGTTGAGCAATTCCTTGACCGGAGATGTAACTAATCTTAATTATAACAAGTTCTATCAAATAAGTCGAAACATATATATTACAATGGCTGGGTTGAGGATGGCATGGGAGGATATGTACCAATTGATAACATCAGTGTTTTCAACAATACCTGAGGAGTCGCACAGGGTGGAGCAAGCGGCTAATCTAGCCTATCAGTTTGTTAGTCCCTATGGCACAGTGTGCAGCCTTGTTTTGGGATGGGACATTACAAGTCCACATCCCCAAATGTTTCGAGTGATCGCAGGTGAATCATTTACGACGAGTGATAGTGCTATGGCTCTTGGTACAGGAAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
STAG

Protein Analysis

260

Amino Acids

29.17

Weight (kDa)

8.61

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021206)

Species Orthologous Gene IDs
malus_domestica MD11G1279100.v1.1 MD11G1285600.v1.1 MD11G1285800.v1.1 MD11G1285900.v1.1
pyrus_communis pycom11g25320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AarI CACCTGC 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 133
AciI CCGC 1 cut(s) 617
AcsI RAATTY 1 cut(s) 412
AdeI CACNNNGTG 2 cut(s) 607, 660
AfaI GTAC 2 cut(s) 557, 766
AfiI CCNNNNNNNGG 1 cut(s) 673
AgsI TTSAA 3 cut(s) 161, 438, 582
AjnI CCWGG 2 cut(s) 113, 349
AluBI AGCT 2 cut(s) 50, 268
AluI AGCT 2 cut(s) 50, 268
ApeKI GCWGC 3 cut(s) 50, 95, 663
ApoI RAATTY 1 cut(s) 412
AseI ATTAAT 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 737
AvaII GGWCC 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 591
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 3 cut(s) 37, 82, 675
BccI CCATC 2 cut(s) 532, 672
BciT130I CCWGG 2 cut(s) 115, 351
BclI TGATCA 1 cut(s) 75
BfaI CTAG 1 cut(s) 626
BfuAI ACCTGC 1 cut(s) 713
BisI GCNGC 4 cut(s) 51, 96, 618, 664
BlsI GCNGC 4 cut(s) 52, 97, 619, 665
Bme1390I CCNGG 2 cut(s) 115, 351
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 171, 343, 385
BmrFI CCNGG 2 cut(s) 115, 351
Bpu10I CCTNAGC 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse21I CCTNAGG 1 cut(s) 591
BseBI CCWGG 2 cut(s) 115, 351
BseGI GGATG 3 cut(s) 543, 683, 697
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 2 cut(s) 156, 582
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 3 cut(s) 37, 82, 675
BseYI CCCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 682
BshNI GGYRCC 1 cut(s) 383
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 3 cut(s) 183, 630, 695
BslI CCNNNNNNNGG 1 cut(s) 673
BsmFI GGGAC 3 cut(s) 183, 630, 695
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 3 cut(s) 75, 282, 717
BspACI CCGC 1 cut(s) 617
BspCNI CTCAG 2 cut(s) 157, 583
BspLI GGNNCC 3 cut(s) 171, 343, 385
BspMI ACCTGC 1 cut(s) 713
BspT107I GGYRCC 1 cut(s) 383
BssMI GATC 3 cut(s) 75, 282, 717
BssNAI GTATAC 1 cut(s) 134
BssSI CACGAG 1 cut(s) 174
Bst1107I GTATAC 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 115, 351
Bst4CI ACNGT 2 cut(s) 404, 658
BstAPI GCANNNNNTGC 1 cut(s) 660
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 3 cut(s) 165, 327, 591
BstF5I GGATG 3 cut(s) 543, 683, 697
BstKTI GATC 3 cut(s) 78, 285, 720
BstMBI GATC 3 cut(s) 75, 282, 717
BstMWI GCNNNNNNNGC 2 cut(s) 626, 660
BstNI CCWGG 2 cut(s) 115, 351
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 113, 349
BstV1I GCAGC 3 cut(s) 37, 82, 675
BstZ17I GTATAC 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 591
BtsCI GGATG 3 cut(s) 543, 683, 697
BtsIMutI CAGTG 3 cut(s) 185, 579, 663
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 1 cut(s) 615
Cfr13I GGNCC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 2 cut(s) 556, 765
CviAII CATG 4 cut(s) 290, 369, 380, 543
CviQI GTAC 2 cut(s) 556, 765
DdeI CTNAG 3 cut(s) 165, 327, 591
DpnI GATC 3 cut(s) 77, 284, 719
DpnII GATC 3 cut(s) 75, 282, 717
DraIII CACNNNGTG 2 cut(s) 607, 660
Eco24I GRGCYC 1 cut(s) 67
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 113, 349
EcoRV GATATC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 4 cut(s) 293, 372, 383, 546
FaqI GGGAC 3 cut(s) 183, 630, 695
FatI CATG 4 cut(s) 289, 368, 379, 542
FbaI TGATCA 1 cut(s) 75
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 51, 96, 618, 664
FokI GGATG 3 cut(s) 550, 684, 690
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 4 cut(s) 51, 96, 618, 664
FspBI CTAG 1 cut(s) 626
GluI GCNGC 4 cut(s) 51, 96, 618, 664
GsaI CCCAGC 1 cut(s) 531
HapII CCGG 1 cut(s) 459
Hin1II CATG 4 cut(s) 293, 372, 383, 546
HinfI GANTC 6 cut(s) 182, 208, 332, 434, 596, 728
HpaII CCGG 1 cut(s) 459
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 2 cut(s) 134, 695
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 134, 695
Hpy99I CGWCG 1 cut(s) 742
HpyCH4III ACNGT 2 cut(s) 404, 658
HpyCH4V TGCA 5 cut(s) 17, 70, 246, 356, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 660
HpyF3I CTNAG 3 cut(s) 165, 327, 591
Hsp92II CATG 4 cut(s) 293, 372, 383, 546
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 3 cut(s) 75, 282, 717
LmnI GCTCC 2 cut(s) 347, 610
Lsp1109I GCAGC 3 cut(s) 37, 82, 675
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 1 cut(s) 626
MaeIII GTNAC 2 cut(s) 21, 466
MalI GATC 3 cut(s) 77, 284, 719
MboI GATC 3 cut(s) 75, 282, 717
MfeI CAATTG 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 5 cut(s) 137, 412, 448, 478, 560
MlyI GAGTC 3 cut(s) 202, 341, 605
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 7 cut(s) 54, 160, 183, 189, 528, 541, 586
MseI TTAA 3 cut(s) 140, 390, 477
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 2 cut(s) 115, 351
MunI CAATTG 1 cut(s) 560
MvaI CCWGG 2 cut(s) 115, 351
MwoI GCNNNNNNNGC 2 cut(s) 626, 660
NdeII GATC 3 cut(s) 75, 282, 717
NlaIII CATG 4 cut(s) 293, 372, 383, 546
NlaIV GGNNCC 3 cut(s) 171, 343, 385
NmuCI GTSAC 1 cut(s) 21
NspI RCATGY 1 cut(s) 293
PaqCI CACCTGC 1 cut(s) 713
PfeI GAWTC 3 cut(s) 182, 434, 728
PkrI GCNGC 4 cut(s) 52, 97, 619, 665
PleI GAGTC 3 cut(s) 202, 340, 604
PpsI GAGTC 3 cut(s) 202, 340, 604
PpuMI RGGWCCY 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 390
PsiI TTATAA 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 113, 349
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 2 cut(s) 113, 349
PspN4I GGNNCC 3 cut(s) 171, 343, 385
PspPI GGNCC 1 cut(s) 170
PspPPI RGGWCCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 557, 766
RsaNI GTAC 2 cut(s) 556, 765
SaqAI TTAA 3 cut(s) 140, 390, 477
SatI GCNGC 4 cut(s) 51, 96, 618, 664
Sau3AI GATC 3 cut(s) 75, 282, 717
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 3 cut(s) 202, 341, 605
ScrFI CCNGG 2 cut(s) 115, 351
SduI GDGCHC 1 cut(s) 67
SetI ASST 7 cut(s) 52, 175, 270, 352, 364, 592, 727
SexAI ACCWGGT 1 cut(s) 349
SinI GGWCC 1 cut(s) 170
Sse9I AATT 5 cut(s) 137, 412, 448, 478, 560
SsiI CCGC 1 cut(s) 617
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 113, 349
TaaI ACNGT 2 cut(s) 404, 658
TaqI TCGA 2 cut(s) 505, 712
TasI AATT 5 cut(s) 137, 412, 448, 478, 560
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 3 cut(s) 182, 434, 728
Tru1I TTAA 3 cut(s) 140, 390, 477
Tru9I TTAA 3 cut(s) 140, 390, 477
TscAI CASTG 3 cut(s) 192, 579, 663
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 3 cut(s) 50, 95, 663
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 327, 357, 390
TspRI CASTG 3 cut(s) 192, 579, 663
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 1 cut(s) 412
XceI RCATGY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.