MD11G1287800.v1.1

mRNA-capping enzyme-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
40726504 .. 40733242
6739 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1287800.v1.1.491

Sequence Viewer

Length: 1893 bp
ATGGATGGAGAAGATATAAGATTGGGATTCAAGAGAAAAAACCCATATCAGGATTCTGGGTTTCAGAACAGAAATCATCATCAAGCTTTTGATCAACACATGCTCCCTGAAGGTTGGGTTGGTTGCCCTGCATATGGTGGAGAAATAAGCTGTATAATTCCATCAAAAGTACCACTTGGTGAGTCTTTCAATGACCATATTGCTGGTGAAACATACACTCCAAAGCAAGTCATTCATCAGCAAAGACTGCTAGGAAGAGAACTCGGTTTAGTGATTGATTTAACGAACACTACTCGTTACTATCCCCTTTCGGATTGGACAAAAGAAGGCATTCGGCATGTTAAGATACAATGCAGAGGAAGGGATTCCGTGCCCGATAATGCAGCTGTAGATAAATTTCTTTATGAGGTATCACAATTTTTCTCCAATAGAACAGACCCAATGAGGTATATACTTGTTCACTGTACGCACGGGCATAACCGCACAGGTTTCATGATTGTTCATTTTCTTGTACGCAACGAATCAATTTCAGTTACCGAGGCAACAGATACATTTGCCAGGGCACGTCCTCCAGGGATATACAAACAGGACTATATTGATGAACTGTACAAGTTTTATCAAGAAAGAAAGCCGGAATCAGTTGTTTGCCCTCAAACTCCTGAGTGGAAGAGAGTTTCGCATCTTGATGAAAAAGCAGAAGCTGTGATGCATCAGGACAATGAGTATCATGCGAGAAATGAAGCAATGACGATTGATGATGTTTTGGGTGAACGAATACCTTATAACCAGCAAAAATCGATGCAAGAAGCTGTTTATGATTTACTCAAGATGGAGAAAAGGGGTAAAGGGAATTTACAATTTCCTGGGTCGCATCCTGTTTCGCTCAACAGGTTTGTTCCAACAATAGCCATATCAATGATAGTTCTGTTTTTATATCACTTTGTACTCTGTAGGGACAACCAACAACTATTACGACAGCGCTATTACTATGCCACATGGAAAGCCGATGGAACACGTTATATGATGCTAATTACATGGGACGGCTGTTATTTGATTGATAGGAAATTTTTTTTCCGACGGGTCCAGATGCGGTTCCCGTGCAAATTCTCAAATAAGGTTATACCTGAGAAGACCCACAACTTCACTTTACTTGATGGAGAGATGATAATTGACACTGACCCAAATACTCAAAAGCAAGACCGAAGATACCTCATTTATGAACTGCAATTCCATGAACGGTGGAAGATGCTTGAAAAAGAAGTGATTGAGCCTCGAAATATGGAACGTGATACTCTTTCCAAGAGTGTAGAGCCTTATTACAGATACGACTTGGAACTGTTCAGTGTGAGGAGGAAGGGTTTTTGGTTGCTGTCTACGGTTACCAAGCTTTTGAGGAAATTCATTCCTGGGCTTTCACATGCATCAGACGGTCTGATATTCCAGGGCTGGGACGATGCATATGTACCCCGAACGCATGAAGGTCTTTTGAAGTGGAAGTTTCCTGAAATGAATTCAGTTGATTTTCTCTTTGAGTTAGGAGTTGATGGCCGCGAGCTACTTTTTCTGAATGAGCGCGGAAGGAAGAAGCTAATGGGAGGCTATAGGGTTGTTTTTAAAGATGAACTGGATCCTGCTTTTTGTTCGGGGAAGATTATAGAGTGCGCGTGGGATGCCGAGCGAAATGTATGGGTGTGTATGCGGACTAGGCCGGACAAATCAACCCCGAATGAGTTCAATACCTATAAGAAGGTAATGCGAAGCATAAACGATAATATTACGGAGGAAGTGCTGTTGAAGGAGATTGAGGAGATTGTCCGTCTACCCATGTACGCTGACCGAATACGCAACGACATTAAGGCGCACGAGCACACATCGTCTTCCCAGCGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

631

Amino Acids

74.44

Weight (kDa)

8.3

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 86 - 207 5.5e-13 Dual specificity phosphatase, catalytic domain
mRNA_cap_enzyme PF01331 317 - 499 1.8e-53 mRNA capping enzyme, catalytic domain
mRNA_cap_C PF03919 546 - 598 3.5e-17 mRNA capping enzyme, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AccI GTMKAC 2 cut(s) 1373, 1819
AccII CGCG 3 cut(s) 1551, 1575, 1664
AciI CCGC 5 cut(s) 481, 1090, 1549, 1575, 1699
AclWI GGATC 2 cut(s) 1622, 1635
AcoI YGGCCR 1 cut(s) 1546
AcsI RAATTY 6 cut(s) 395, 850, 1064, 1103, 1397, 1510
AcuI CTGAAG 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 7 cut(s) 171, 466, 513, 608, 945, 1464, 1829
AfeI AGCGCT 1 cut(s) 980
AfiI CCNNNNNNNGG 4 cut(s) 49, 134, 1447, 1887
AflIII ACRYGT 1 cut(s) 1013
AgsI TTSAA 6 cut(s) 31, 190, 1253, 1489, 1735, 1795
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 5 cut(s) 557, 571, 862, 1405, 1440
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AloI GAACNNNNNNTCC 2 cut(s) 1212, 1244
AluBI AGCT 8 cut(s) 86, 150, 386, 701, 809, 1387, 1555, 1588
AluI AGCT 8 cut(s) 86, 150, 386, 701, 809, 1387, 1555, 1588
Alw21I GWGCWC 1 cut(s) 1869
AlwI GGATC 2 cut(s) 1622, 1635
AlwNI CAGNNNCTG 1 cut(s) 701
Aor51HI AGCGCT 1 cut(s) 980
AoxI GGCC 2 cut(s) 1546, 1706
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 6 cut(s) 395, 850, 1064, 1103, 1397, 1510
Asp700I GAANNNNTTC 3 cut(s) 330, 364, 1730
AspLEI GCGC 5 cut(s) 981, 1575, 1664, 1861, 1887
AspS9I GGNCC 1 cut(s) 1081
AsuHPI GGTGA 3 cut(s) 191, 218, 779
AvaII GGWCC 1 cut(s) 1081
BaeGI GKGCMC 2 cut(s) 375, 565
BamHI GGATCC 1 cut(s) 1627
BauI CACGAG 1 cut(s) 1862
BbsI GAAGAC 2 cut(s) 1136, 1869
Bbv12I GWGCWC 1 cut(s) 1869
BbvI GCAGC 1 cut(s) 395
BccI CCATC 5 cut(s) 169, 823, 1001, 1148, 1538
BceAI ACGGC 1 cut(s) 1057
BciT130I CCWGG 5 cut(s) 559, 573, 864, 1407, 1442
BclI TGATCA 1 cut(s) 91
BfaI CTAG 2 cut(s) 251, 1704
BfmI CTRYAG 3 cut(s) 387, 949, 1600
BfoI RGCGCY 2 cut(s) 982, 1888
BisI GCNGC 2 cut(s) 384, 1549
BlsI GCNGC 2 cut(s) 385, 1550
Bme1390I CCNGG 5 cut(s) 559, 573, 864, 1407, 1442
Bme18I GGWCC 1 cut(s) 1081
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 1081
BmiI GGNNCC 3 cut(s) 1082, 1094, 1629
BmrFI CCNGG 5 cut(s) 559, 573, 864, 1407, 1442
BpiI GAAGAC 2 cut(s) 1136, 1869
BpmI CTGGAG 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 809
Bsa29I ATCGAT 1 cut(s) 797
BsaJI CCNNGG 6 cut(s) 537, 558, 572, 863, 1406, 1441
BsaXI ACNNNNNCTCC 6 cut(s) 87, 117, 202, 232, 1342, 1372
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 134, 1447, 1887
Bse118I RCCGGY 1 cut(s) 1887
Bse1I ACTGG 1 cut(s) 1629
Bse3DI GCAATG 1 cut(s) 750
BseBI CCWGG 5 cut(s) 559, 573, 864, 1407, 1442
BseCI ATCGAT 1 cut(s) 797
BseDI CCNNGG 6 cut(s) 537, 558, 572, 863, 1406, 1441
BseGI GGATG 3 cut(s) 10, 871, 1675
BseLI CCNNNNNNNGG 4 cut(s) 49, 134, 1447, 1887
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 2 cut(s) 651, 1116
BseNI ACTGG 1 cut(s) 1629
BseRI GAGGAG 2 cut(s) 1363, 1820
BseSI GKGCMC 2 cut(s) 375, 565
BseXI GCAGC 1 cut(s) 395
BseYI CCCAGC 2 cut(s) 1446, 1881
Bsh1236I CGCG 3 cut(s) 1551, 1575, 1664
BshFI GGCC 2 cut(s) 1548, 1708
BshVI ATCGAT 1 cut(s) 797
BsiHKAI GWGCWC 1 cut(s) 1869
BsiSI CCGG 3 cut(s) 632, 1709, 1888
BslFI GGGAC 3 cut(s) 968, 1052, 1463
BslI CCNNNNNNNGG 4 cut(s) 49, 134, 1447, 1887
BsmFI GGGAC 3 cut(s) 968, 1052, 1463
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 1548, 1708
Bsp1286I GDGCHC 3 cut(s) 375, 565, 1869
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 2 cut(s) 91, 1627
BspACI CCGC 5 cut(s) 481, 1090, 1549, 1575, 1699
BspANI GGCC 2 cut(s) 1548, 1708
BspCNI CTCAG 2 cut(s) 652, 1117
BspDI ATCGAT 1 cut(s) 797
BspFNI CGCG 3 cut(s) 1551, 1575, 1664
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 1082, 1094, 1629
BspPI GGATC 2 cut(s) 1622, 1635
BsrDI GCAATG 1 cut(s) 750
BsrFI RCCGGY 1 cut(s) 1887
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 1 cut(s) 1629
BssAI RCCGGY 1 cut(s) 1887
BssECI CCNNGG 6 cut(s) 537, 558, 572, 863, 1406, 1441
BssMI GATC 2 cut(s) 91, 1627
BssSI CACGAG 1 cut(s) 1862
Bst2BI CACGAG 1 cut(s) 1862
Bst2UI CCWGG 5 cut(s) 559, 573, 864, 1407, 1442
Bst4CI ACNGT 6 cut(s) 464, 606, 1239, 1338, 1378, 1430
Bst6I CTCTTC 2 cut(s) 250, 662
BstAPI GCANNNNNTGC 1 cut(s) 247
BstAUI TGTACA 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 1553
BstDEI CTNAG 2 cut(s) 660, 1125
BstEII GGTNACC 1 cut(s) 1378
BstF5I GGATG 3 cut(s) 10, 871, 1675
BstFNI CGCG 3 cut(s) 1551, 1575, 1664
BstH2I RGCGCY 2 cut(s) 982, 1888
BstHHI GCGC 5 cut(s) 981, 1575, 1664, 1861, 1887
BstKTI GATC 2 cut(s) 94, 1630
BstMBI GATC 2 cut(s) 91, 1627
BstMWI GCNNNNNNNGC 3 cut(s) 247, 1670, 1705
BstNI CCWGG 5 cut(s) 559, 573, 864, 1407, 1442
BstNSI RCATGY 3 cut(s) 103, 341, 1421
BstPI GGTNACC 1 cut(s) 1378
BstSCI CCNGG 5 cut(s) 557, 571, 862, 1405, 1440
BstSFI CTRYAG 3 cut(s) 387, 949, 1600
BstSLI GKGCMC 2 cut(s) 375, 565
BstUI CGCG 3 cut(s) 1551, 1575, 1664
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 2 cut(s) 1136, 1869
BstX2I RGATCY 1 cut(s) 1627
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 1627
Bsu15I ATCGAT 1 cut(s) 797
BsuRI GGCC 2 cut(s) 1548, 1708
BsuTUI ATCGAT 1 cut(s) 797
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 3 cut(s) 10, 871, 1675
BtsIMutI CAGTG 3 cut(s) 460, 1173, 1348
Cac8I GCNNGC 1 cut(s) 1553
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 492
CfoI GCGC 5 cut(s) 981, 1575, 1664, 1861, 1887
Cfr10I RCCGGY 1 cut(s) 1887
Cfr13I GGNCC 1 cut(s) 1081
ClaI ATCGAT 1 cut(s) 797
Csp6I GTAC 7 cut(s) 170, 465, 512, 607, 944, 1463, 1828
CviQI GTAC 7 cut(s) 170, 465, 512, 607, 944, 1463, 1828
DdeI CTNAG 2 cut(s) 660, 1125
DpnI GATC 2 cut(s) 93, 1629
DpnII GATC 2 cut(s) 91, 1627
DraI TTTAAA 1 cut(s) 1615
DraIII CACNNNGTG 1 cut(s) 179
EaeI YGGCCR 1 cut(s) 1546
Eam1104I CTCTTC 2 cut(s) 250, 662
EarI CTCTTC 2 cut(s) 250, 662
Eco47I GGWCC 1 cut(s) 1081
Eco47III AGCGCT 1 cut(s) 980
Eco57I CTGAAG 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 1378
EcoO65I GGTNACC 1 cut(s) 1378
EcoRI GAATTC 1 cut(s) 1510
EcoRII CCWGG 5 cut(s) 557, 571, 862, 1405, 1440
EcoT22I ATGCAT 3 cut(s) 711, 1423, 1459
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 3 cut(s) 968, 1052, 1463
FauNDI CATATG 2 cut(s) 133, 1459
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 2 cut(s) 1373, 1819
Fnu4HI GCNGC 2 cut(s) 384, 1549
FokI GGATG 3 cut(s) 17, 858, 1682
Fsp4HI GCNGC 2 cut(s) 384, 1549
FspBI CTAG 2 cut(s) 251, 1704
GlaI GCGC 5 cut(s) 980, 1574, 1663, 1860, 1886
GluI GCNGC 2 cut(s) 384, 1549
GsaI CCCAGC 2 cut(s) 1450, 1885
GsuI CTGGAG 1 cut(s) 555
HaeII RGCGCY 2 cut(s) 982, 1888
HaeIII GGCC 2 cut(s) 1548, 1708
HapII CCGG 3 cut(s) 632, 1709, 1888
HhaI GCGC 5 cut(s) 981, 1575, 1664, 1861, 1887
Hin6I GCGC 5 cut(s) 979, 1573, 1662, 1859, 1885
HinP1I GCGC 5 cut(s) 979, 1573, 1662, 1859, 1885
HindIII AAGCTT 2 cut(s) 84, 1385
HinfI GANTC 6 cut(s) 27, 53, 182, 365, 521, 635
HpaII CCGG 3 cut(s) 632, 1709, 1888
HphI GGTGA 3 cut(s) 191, 218, 779
Hpy166II GTNNAC 4 cut(s) 460, 770, 1374, 1820
Hpy188I TCNGA 6 cut(s) 66, 313, 1076, 1426, 1434, 1566
Hpy8I GTNNAC 4 cut(s) 460, 770, 1374, 1820
Hpy99I CGWCG 1 cut(s) 1080
HpyAV CCTTC 8 cut(s) 104, 320, 354, 1348, 1472, 1572, 1741, 1789
HpyCH4III ACNGT 6 cut(s) 464, 606, 1239, 1338, 1378, 1430
HpyCH4IV ACGT 3 cut(s) 565, 1015, 1285
HpyCH4V TGCA 9 cut(s) 131, 354, 383, 709, 802, 1101, 1225, 1421, 1457
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 1670, 1705
HpyF3I CTNAG 2 cut(s) 660, 1125
HpySE526I ACGT 3 cut(s) 565, 1015, 1285
HspAI GCGC 5 cut(s) 979, 1573, 1662, 1859, 1885
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 91, 1627
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 395
MaeI CTAG 2 cut(s) 251, 1704
MaeII ACGT 3 cut(s) 565, 1015, 1285
MaeIII GTNAC 3 cut(s) 296, 532, 1378
MalI GATC 2 cut(s) 93, 1629
MboI GATC 2 cut(s) 91, 1627
MboII GAAGA 9 cut(s) 23, 267, 679, 1141, 1215, 1255, 1594, 1660, 1869
MflI RGATCY 1 cut(s) 1627
MhlI GDGCHC 3 cut(s) 375, 565, 1869
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 923, 1099
Mph1103I ATGCAT 3 cut(s) 711, 1423, 1459
MroXI GAANNNNTTC 3 cut(s) 330, 364, 1730
MseI TTAA 4 cut(s) 281, 342, 1614, 1854
MslI CAYNNNNRTG 2 cut(s) 684, 914
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 632, 1709, 1888
MspR9I CCNGG 5 cut(s) 559, 573, 864, 1407, 1442
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 5 cut(s) 559, 573, 864, 1407, 1442
MvnI CGCG 3 cut(s) 1551, 1575, 1664
MwoI GCNNNNNNNGC 3 cut(s) 247, 1670, 1705
NdeI CATATG 2 cut(s) 133, 1459
NdeII GATC 2 cut(s) 91, 1627
NlaIV GGNNCC 3 cut(s) 1082, 1094, 1629
NmeAIII GCCGAG 1 cut(s) 1699
NsiI ATGCAT 3 cut(s) 711, 1423, 1459
NspI RCATGY 3 cut(s) 103, 341, 1421
PagI TCATGA 1 cut(s) 492
PctI GAATGC 1 cut(s) 330
PdmI GAANNNNTTC 3 cut(s) 330, 364, 1730
PfeI GAWTC 5 cut(s) 27, 53, 365, 521, 635
PkrI GCNGC 2 cut(s) 385, 1550
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 783
Psp6I CCWGG 5 cut(s) 557, 571, 862, 1405, 1440
PspEI GGTNACC 1 cut(s) 1378
PspFI CCCAGC 2 cut(s) 1446, 1881
PspGI CCWGG 5 cut(s) 557, 571, 862, 1405, 1440
PspN4I GGNNCC 3 cut(s) 1082, 1094, 1629
PspPI GGNCC 1 cut(s) 1081
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 1627
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 7 cut(s) 171, 466, 513, 608, 945, 1464, 1829
RsaNI GTAC 7 cut(s) 170, 465, 512, 607, 944, 1463, 1828
RseI CAYNNNNRTG 2 cut(s) 684, 914
SaqAI TTAA 4 cut(s) 281, 342, 1614, 1854
SatI GCNGC 2 cut(s) 384, 1549
Sau3AI GATC 2 cut(s) 91, 1627
Sau96I GGNCC 1 cut(s) 1081
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 5 cut(s) 559, 573, 864, 1407, 1442
SduI GDGCHC 3 cut(s) 375, 565, 1869
SfcI CTRYAG 3 cut(s) 387, 949, 1600
SgrAI CRCCGGYG 1 cut(s) 1887
SinI GGWCC 1 cut(s) 1081
SmiMI CAYNNNNRTG 2 cut(s) 684, 914
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SsiI CCGC 5 cut(s) 481, 1090, 1549, 1575, 1699
SspI AATATT 1 cut(s) 1774
SspMI CTAG 2 cut(s) 251, 1704
StyD4I CCNGG 5 cut(s) 557, 571, 862, 1405, 1440
TaaI ACNGT 6 cut(s) 464, 606, 1239, 1338, 1378, 1430
TaiI ACGT 3 cut(s) 568, 1018, 1288
TaqI TCGA 2 cut(s) 797, 1273
TaqII GACCGA 2 cut(s) 1215, 1851
TatI WGTACW 2 cut(s) 606, 943
TauI GCSGC 1 cut(s) 1551
TfiI GAWTC 5 cut(s) 27, 53, 365, 521, 635
Tru1I TTAA 4 cut(s) 281, 342, 1614, 1854
Tru9I TTAA 4 cut(s) 281, 342, 1614, 1854
TscAI CASTG 3 cut(s) 467, 1180, 1348
TseI GCWGC 1 cut(s) 383
TspGWI ACGGA 3 cut(s) 358, 1793, 1805
TspRI CASTG 3 cut(s) 467, 1180, 1348
VpaK11BI GGWCC 1 cut(s) 1081
XapI RAATTY 6 cut(s) 395, 850, 1064, 1103, 1397, 1510
XceI RCATGY 3 cut(s) 103, 341, 1421
XmiI GTMKAC 2 cut(s) 1373, 1819
XmnI GAANNNNTTC 3 cut(s) 330, 364, 1730
XspI CTAG 2 cut(s) 251, 1704
Zsp2I ATGCAT 3 cut(s) 711, 1423, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.