MD12G1088600.v1.1

Has 11 Blast hits to 11 proteins in 5 species Archae - 0

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0017168
Physical Location & Seq
Reverse (-)
10903072 .. 10904395
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1088600.v1.1.491

Sequence Viewer

Length: 267 bp
ATGGCGGATTCGACATTTCCAGCAGCTAGTGTAGATGCAGAATTGAATCCAGGCAAAAACAAGAACTTTGAGGAAGACAGTGGATCATCTCTAGTAACTACCTCCAAGGAAATTAAGGACAAAGTGGAGGCTGAAGAGAGGAAGCAGCAGAAGAAGGAGAAGAAAGATGCAGCGCAGATGCTCAAGAAAAGCATTATAATCTCGGCTATGGTTGTGGCTGTGGCCGGGGTGATATTTGCGCTAACCAAGAAATCGAGAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.6

Weight (kDa)

9.19

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52620
malus_domestica MD12G1027000.v1.1 MD12G1088600.v1.1 MD14G1027100.v1.1
prunus_persica Prupe.7G104600_v2.0.a1
pyrus_communis pycom14g02580
rosa_chinensis RchiOBHm_Chr3g0474201
rosa_multiflora Rmu_sc0015051.1_g000003
rosa_samantha Rh3AG189900 Rh3BG219100 Rh3CG214500 Rh3DG214600
rosa_wichuraiana Rw3G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 153
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 23, 145, 170
AspLEI GCGC 2 cut(s) 175, 241
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 3 cut(s) 35, 157, 182
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 226
BfaI CTAG 2 cut(s) 27, 92
BisI GCNGC 3 cut(s) 24, 146, 171
BlsI GCNGC 3 cut(s) 25, 147, 172
Bme1390I CCNGG 2 cut(s) 51, 226
BmrFI CCNGG 2 cut(s) 51, 226
BmsI GCATC 3 cut(s) 25, 157, 168
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 105, 225
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 105, 225
BseXI GCAGC 3 cut(s) 35, 157, 182
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 225
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 105, 225
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 129
BstHHI GCGC 2 cut(s) 175, 241
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 49, 224
BstV1I GCAGC 3 cut(s) 35, 157, 182
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 85
CfoI GCGC 2 cut(s) 175, 241
CviJI RGCY 5 cut(s) 26, 131, 206, 218, 224
CviKI_1 RGCY 5 cut(s) 26, 131, 206, 218, 224
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaiI YATR 2 cut(s) 197, 209
Fnu4HI GCNGC 3 cut(s) 24, 146, 171
Fsp4HI GCNGC 3 cut(s) 24, 146, 171
FspBI CTAG 2 cut(s) 27, 92
GlaI GCGC 2 cut(s) 174, 240
GluI GCNGC 3 cut(s) 24, 146, 171
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 225
HhaI GCGC 2 cut(s) 175, 241
Hin6I GCGC 2 cut(s) 173, 239
HinP1I GCGC 2 cut(s) 173, 239
HinfI GANTC 2 cut(s) 8, 46
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 184, 255
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 38, 170
HspAI GCGC 2 cut(s) 173, 239
Kzo9I GATC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 33, 36, 63, 238
Lsp1109I GCAGC 3 cut(s) 35, 157, 182
LweI GCATC 3 cut(s) 25, 157, 168
MaeI CTAG 2 cut(s) 27, 92
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 4 cut(s) 86, 146, 163, 172
MluCI AATT 2 cut(s) 41, 111
MnlI CCTC 4 cut(s) 64, 112, 121, 132
MseI TTAA 1 cut(s) 114
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 51, 226
MvaI CCWGG 1 cut(s) 51
NciI CCSGG 1 cut(s) 226
NdeII GATC 1 cut(s) 83
NmeAIII GCCGAG 1 cut(s) 182
PfeI GAWTC 2 cut(s) 8, 46
PkrI GCNGC 3 cut(s) 25, 147, 172
PsiI TTATAA 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 24, 146, 171
Sau3AI GATC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 51, 226
SetI ASST 2 cut(s) 28, 104
SfaNI GCATC 3 cut(s) 25, 157, 168
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 41, 111
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 27, 92
StyD4I CCNGG 2 cut(s) 49, 224
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 11, 254
TasI AATT 2 cut(s) 41, 111
TfiI GAWTC 2 cut(s) 8, 46
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 85
TseI GCWGC 3 cut(s) 23, 145, 170
TspRI CASTG 1 cut(s) 85
XspI CTAG 2 cut(s) 27, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.